Array 1 127234-122157 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJS01000013.1 Sphaerotilus hippei strain DSM 566 Ga0215648_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 127233 28 100.0 32 ............................ TGTACTGACGTTCACCGAAAGTGTGCAAAAGT 127173 28 100.0 32 ............................ GACCTGACGCCCCGCGCCGAGGTGGTGCTTGA 127113 28 100.0 32 ............................ AGATCCTCGCGCGCTACTGGGACGCCTACCGC 127053 28 100.0 32 ............................ CAGGATCGATGCGTCGAGGTTGACCGACGACA 126993 28 100.0 32 ............................ ATCTTGAGGATTCCCTCCACATGGTCCGACGC 126933 28 100.0 32 ............................ TTTGCCGGCGGCCGCCTGGTGCAGCGCCGCGT 126873 28 100.0 32 ............................ GCCGAGCTGCCGGCCGTCATCCGCCCGGTCCG 126813 28 100.0 32 ............................ CGCCCAGCTTTCGGGCCAGTGACGCCTGACCC 126753 28 100.0 32 ............................ AGGTCGCACCACTCGCGGTGCAGCAGCCACAG 126693 28 100.0 32 ............................ CAGTTTGACCGCGCTCGTTTCACGGAACTCGA 126633 28 100.0 32 ............................ TGTGCACGTGCCCACGCCGAGCCCGGCAGCCC 126573 28 100.0 32 ............................ GCCTGAAGCCTCCAGTCGTCCGGACTCTGCGG 126513 28 100.0 32 ............................ ATCAGCCGCTCGATCAGCGTGTCCTGGCTGGC 126453 28 100.0 32 ............................ AATTCCAGACCGCCACATCGAGGAAATCGCAC 126393 28 100.0 32 ............................ TCCACCCACTGAGCACCAGCGGAGCGATGACG 126333 28 100.0 32 ............................ GCCAGGAGAACGACGACGATGACGAGGAAGAC 126273 28 100.0 32 ............................ TGTCGGTATCTACACAGCAGGTGCCGTTAACA 126213 28 100.0 32 ............................ ACAGGGGCGTGAAATATATTCATATTCCGCAG 126153 28 100.0 32 ............................ ACCTCACGCGCACCTCGACCGCTGGCCTACTG 126093 28 100.0 32 ............................ ATGCTGAGGGTCGTCCCCTTACCATCAAGCAT 126033 28 100.0 32 ............................ ATGCGAACTTGGGGTTCGTGGCGGCGGTCGGG 125973 28 100.0 32 ............................ GAGCCGCGGCGCCAGGCGCCTGGCGTCGGTGA 125913 28 100.0 32 ............................ GAACATCAAACCCGCTGCAGAGCGATCAGTCA 125853 28 100.0 32 ............................ GCCGAATGCACGCAGTTGGCGAGGAGTCGGTG 125793 28 100.0 32 ............................ GGAACAGCACCGGGGTGCCGGGCCCAGGCCAC 125733 28 100.0 33 ............................ CGACAGGTGGACATGCGTATCGCTGACCTTGCA 125672 28 100.0 32 ............................ AATACCGTTGCAAGGACCGAGCGTTGTGCAAA 125612 28 100.0 32 ............................ ACCGTCGAGCGCTCGGTCGCCTACATCTGCGC 125552 28 100.0 32 ............................ AGGCGTAGTCCTCGCAGTCGGCCAGGCCGGCG 125492 28 100.0 32 ............................ ATCACGCACGACCGCGCCCGGTCCACCGCCCG 125432 28 100.0 32 ............................ AGGGCCGCCTTGACGACCTCGCGGGGGTACAC 125372 28 100.0 32 ............................ GACGGCGTTGAGAGCCCCGTCACGACCACTGA 125312 28 100.0 32 ............................ GCCATGGACATCCAGACCCAAATCGCCATCGA 125252 28 100.0 32 ............................ ATTTCGATGGTGGTCAGGCGCTCGATCAAATC 125192 28 100.0 32 ............................ TCCTCGGCGGGGGCGGCCTTGAGCTTGGCTTC 125132 28 100.0 32 ............................ GCCACGCGGGCCAGGGTGTTGCGGCTGCGGCC 125072 28 100.0 32 ............................ ATTGAAGCCGCCCTGAAAGCGGCGAATGCCCG 125012 28 100.0 33 ............................ ATGCGCTCGGCGCCGCGCGCGAGGCTGTCGCTG 124951 28 100.0 32 ............................ ATCATGGCCACCGTCTCCATGCCCAGGTCGAG 124891 28 100.0 32 ............................ GACCGATCCACGGGTAGACGTGGCGCCGCATG 124831 28 100.0 32 ............................ TTATTGGCTCTCTTCGGGCTGATGCTCAGCTT 124771 28 100.0 32 ............................ ACGCGACGTGCGAAATGGAAAAGTTCCAGGCC 124711 28 100.0 32 ............................ GTCGCCGCGATGCGGGCGCCAGCCTCGTGCGC 124651 28 100.0 32 ............................ AGGCGATCCAGCAGCGCAACATGCAGGGCCTT 124591 28 100.0 34 ............................ CCACCCAGGCCAGCCCGCGGATTTTCTTCTCGAC 124529 28 100.0 32 ............................ GAGCCGGCCGGCGCGGTACAGGCTCGGCGTGT 124469 28 100.0 32 ............................ AGCGACAGCAGCCCCATCAGCATCTCGATCAA 124409 28 100.0 32 ............................ AGTAAACCGGCAATCTCATTGGAGCTACATTT 124349 28 100.0 32 ............................ GCCATCGTTGTACATGCAACCGGACCCGCCAG 124289 28 100.0 32 ............................ GTATGGAAAATCAGTCCAGGTCATGCGAGCGC 124229 28 100.0 32 ............................ TTGCCGGCAGACCCCCCATGAAAGAGGTCAGC 124169 28 100.0 32 ............................ GAAATCGGGCAGGCGCAGCTGGGCGCGGTAGG 124109 28 100.0 32 ............................ TCGCCAGGCGAGACTGTCTTGCTGGTGACGAA 124049 28 100.0 32 ............................ GCCCGGGGCATTTATTTTCGACAGTTTGCAGC 123989 28 100.0 32 ............................ AGGATGGAAAGGCCCTCGAATACTCCGGCCGT 123929 28 100.0 32 ............................ GTTCAGGAAAGCGGGGCGCGGGGTAGTGGCAG 123869 28 100.0 32 ............................ AGGCCGGGGTCGAGATGGGCCGCGCGTCGGTC 123809 28 100.0 32 ............................ TCTGGGGTGGACGACGGTCAACGGCCAGCGCA 123749 28 100.0 32 ............................ TGCGGCGTCGGCGGCCTCCTTGGCCAGACCGA 123689 28 100.0 32 ............................ ATCAAGCATGGTCCGAACGCCGGCCAGCCGCG 123629 28 100.0 32 ............................ CCGCGATGTACCGCAACCCGGCGACCGGCGAG 123569 28 100.0 32 ............................ AGGCCGTCAAATTCCACGAGGTCCGACTCCAG 123509 28 100.0 32 ............................ TGCTGGTCGCAGTACTGGGCCACCTGATAGAG 123449 28 100.0 32 ............................ AGTCATCGAGGGAGCGCAGCGAGACGTAGTCC 123389 28 100.0 32 ............................ GCGGCGTGGCGAACAAGGCTCTGCGCCGTGGT 123329 28 100.0 32 ............................ ATCGGCCGCCGTCAGCGAGTCGAGCCCCGCGA 123269 28 100.0 32 ............................ GCTCGCGTGCGGCTTGGCGGCCAGCATCAAGA 123209 28 100.0 32 ............................ TTCCCCCGCCCCCGCCCCTGCCCTAGGCTGCC 123149 28 100.0 32 ............................ GGTGAGTATTGAATCCGACCGGCTCAACTGAA 123089 28 100.0 32 ............................ TGCTTGTGTGTTGCCAAGGGCTGTACGCCCCT 123029 28 100.0 32 ............................ GGTGTCGCACAGCTCGATGAACACGCACTCGC 122969 28 100.0 33 ............................ TGGCTGGGCGCCGGGCTTGTACTGCGTGGCAAC 122908 28 100.0 35 ............................ TCGATCAGCGCCGCCGCCGCAGCAGCAGCAGCAGC 122845 28 100.0 33 ............................ ATAGAGGCCCGGCCCCCGCTGATGGGATTCGGC 122784 28 96.4 32 .........................G.. TCCGCCGGGGCGAGCACGTCGACGCCGTAGCG 122724 28 100.0 32 ............................ GTAGCGGATCAGCCCGGTGTAGCTGCCGTCGA 122664 28 100.0 32 ............................ TCCCGTTGTATCGGCCGTCGTGAGTGTGAATT 122604 28 100.0 32 ............................ GCCAGGCGCTGCGCGACATCACCCAGCAGGCC 122544 28 100.0 32 ............................ TGTCGGGCGCGTTCAACAACTTGGCCGCCAGC 122484 28 100.0 32 ............................ TGCACGAGCCCAGCACGCCCGTTTATGCGTGG 122424 28 100.0 32 ............................ GGCAGCAAAGGCGGGTCGCTCTACCTGCAGGC 122364 28 100.0 32 ............................ GACCCGATCGCCATCGAGTCCGTTCCTCGCAA 122304 28 100.0 32 ............................ CTCAAGACCGGTCTCGGTGGCGATCTCTTCGG 122244 28 100.0 32 ............................ AAAGAAAGGCGGGAGCCCGAATATCGGGAACC 122184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 85 28 100.0 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CTGCAGTTCCTGTTGGGCTTGCAGCCGCGATGACGCTCCCATGTCGCTCAGCCTCCTGCCATATGTTGAGACCGTGGCTTCATGCAATCGCCCTGGTAGTAGGTGCCCCAGGCGTTC # Right flank : TGCAGGACGCAATCAACCGGGCCGTTCACTGCCGGAGACTCAGAAAAAATCCACCCCACCCGCCTTGTCGCCCAGGGCGATGCAGCGGTCGCGGACCAGGCTTTCGTGCGAGGCGGCGTGGTTGCGGCCGTGCTGCTTGACCCAGTAGACGGCGTCGTCGGCGCGGGCGAAGGCGTCGGTGGGGGTGTCGTCGAGGCCGAGGGCGGTGAAGCCGACGCTGACGGTGATGTGGCCGACCTGGGGAAATTCGTGGGCGCGCACGGCCTGGCGCAGGCGCTCGAAGGCGTGCAGGGCGTCGGCCTCGTCGTGGCAGCGCAGCAGCACGACGAACTCCTCGCCGCCGAAGCGGTAGACCTTGTCCTGGCCGCGGAAGGTGTCCTTGAGCATGCGGGCCAGCAGCAGGATGACCTCGTCGCCGATGAGGTGGCCGAAGCGGTCGTTGACGCTCTTGAAGTGGTCGAGGTCGATGATGCCCAGCCAGCAGCCCTGGCGGCGGGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2873-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJS01000015.1 Sphaerotilus hippei strain DSM 566 Ga0215648_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2872 28 100.0 32 ............................ GACCGCCGGGATCTCGTTGTTCAGGCGGGTGA 2812 28 100.0 32 ............................ GCACCGATCCCGGCAGCACGCTGGACGGAAAC 2752 28 100.0 32 ............................ CTTACGCGATGGCCGGCGGCAACCTCGCCTGA 2692 28 100.0 32 ............................ GTCGAGCTGCGGGCCGGCGAGGCCTACACGCT 2632 28 100.0 32 ............................ TCGTAGCTGTCGCCGGTCTCGTTGGTGGTGCC 2572 28 100.0 32 ............................ GCGGAGCTGGCGGGTCAGGTTGGACGCCACGT 2512 28 100.0 33 ............................ CCCGAGCAGCAGGAGCTGATCGTCACGCTCGGC 2451 28 100.0 33 ............................ AAGTGGCCCACCGCAGCACTGACGGGGCCGTCC 2390 28 100.0 32 ............................ TGGTCGAACACGGTGGACACGCGGGCGGCCAG 2330 28 100.0 32 ............................ ATCCAGCTCATCCGCGAGTGCCGCGCGCTCGA 2270 28 100.0 33 ............................ CGTGGCTGCTGCTCTGTGTGCGTGCCGTGATGC 2209 28 100.0 32 ............................ AGGAACGCCGCCACCAGGGCGTGCTTTGCGCC 2149 28 100.0 32 ............................ CAGCACTCCCAGGCCCGGCGGGACGATCTGGT 2089 28 100.0 32 ............................ ATCATGACCCCGGCTGAGTAGCTGAACGTCGT 2029 28 100.0 32 ............................ CGAAGTCGGCCGCGGTGCTGCCGGTGGCGATG 1969 28 100.0 32 ............................ ACCGCCCCGGCCAACACCGTCAAGGCCCGCGT 1909 28 100.0 32 ............................ GTTGGCAGTCATCGTCACCGTGAGACCAGCAA 1849 28 100.0 32 ............................ GCCACCAGCGCCACGAGCGGGGCATGGGCCAC 1789 28 100.0 32 ............................ TACTACGATCCGCCGGGCATCCTGACCGTGTG 1729 28 100.0 32 ............................ CACTGGTCGCCGCCCTTGCGCCGTGGATGCTT 1669 28 100.0 32 ............................ TCTGGTGGCATGTACCGTCCTGCTGAGGGTTC 1609 28 100.0 32 ............................ GAGCCGGCCGTCACGGCCTTGCCCAGCGCGAT 1549 28 100.0 32 ............................ TGGCTGATCTGGGATTGGCGCGGATGGCTGAT 1489 28 100.0 33 ............................ CAAACCCAGCGGTGCACAGCTCGCAGGGTTTCG 1428 28 100.0 32 ............................ AGCGCAGGTCGTCACGAGGGCGACAGGGTCGA 1368 28 100.0 32 ............................ ATCAGGACCGCGATGGCTCAATCCATCATCGA 1308 28 100.0 32 ............................ TGGCTGCGATGGGCTGGCGGGTTTACCAGTCG 1248 28 100.0 32 ............................ GTGGCCTGCTCGGCCCCGATCTGGGCCGTGCG 1188 28 100.0 32 ............................ AATATGAAATCGTCGACTCGCCAATAGGGACA 1128 28 100.0 32 ............................ GTGCAGACGCCTGAATCGGGCATGTCTGAGTG 1068 28 100.0 32 ............................ TGGGTGGGCGCATCCAGGCCGCCACCACGACC 1008 28 100.0 32 ............................ GAGCCAGCATCTGGCCGAACACGTCGTCGCCG 948 28 100.0 32 ............................ ACAGCGGGCTGTTCTTGGTCTGCACGTCCGAG 888 28 100.0 32 ............................ GAGACGCCGAACCGGCCGTCATCGGTCGTGAT 828 28 100.0 32 ............................ AAACAGACGCACGCGGGCCTTGACGGTGTTGG 768 28 100.0 32 ............................ GATCAACGCGCGTTGCCGAATCATCCGGTAGA 708 28 100.0 32 ............................ TGCTGAGGAAAGCTCTCTTTGGCCAACTCCCT 648 28 100.0 32 ............................ AAGTTCGGCATCTCGCCGACAACCCGGCGCTT 588 28 100.0 32 ............................ GACCAGGCCGACGGCCGAGACGCCGAGCGTGA 528 28 100.0 32 ............................ AGGTGCGCACCCTGCGCCCGCTCGCCCGCCGC 468 28 100.0 32 ............................ TGGGCGGCAATCTGTGGACCGCCGAAGGCAAG 408 28 100.0 32 ............................ ACGCCGGCTCGTCCCAGACCCACGTGCACCAC 348 28 100.0 32 ............................ AGGCCGAACAGACCGGGCAGGGCGCTGATGGC 288 28 100.0 32 ............................ AGGACGCCGTCGCCATCCAGCTCATCCGCGAG 228 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 100.0 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : GGCCCGGCGACCGTGAAGTCTTTGCCGACGCGGGCTACCAAGGCGCTGGCAAACGCCCGGACGCCCGGGCTGACGTGACCTGGAACATCGCGATGCGGCCTGGCAAGCGCCGCACGCTCGACCCGGCCAAGCCGATGGAAGCCCTGACCGAGCAACTGGAGAAGGTCAAGGCGGGCATTCGGGCGCGAGTGGAGCATCCGTTCCGGGTCGTCAAACGCCAGTTTGGGCACGTCAAAGTGCGCTACCGCGGATTGGCCAAGAACACGGCGCAGTTGCACACGCTGTTTGCGCTGGCCAATCTGTGGATGGTGCGGCGCAAGCTGTTGGGAGTGCTGGCATGAGTGCGCCCGCAATTCGCCAAAAGGGCCTGTGTGGCCCGCCGCTGGGCGCCGCAAGCCTGGAAATTGGGTTGAAACATGCCGAGGTTGCATCACATTCCCATTTGCTCAGCCATGTAGCCCGCGTGCTTGGGCTTTGTGCAGACCTTCCCTAGCCCGCGA # Right flank : ATGTCTGCCCGTAGTAGGTGCAGGGCGATTGCATGAAGCTCTTGCCTGAAATCGGTGCTACAAGAGCGAGTTTTTGACGCCCCCGATGCCCGACAACCAGCCCCTGCCCCCCGCGCCTGAAGCCCTCGGCGACCTGGCGGCGTTCGCCGAACTCGACGACCCGCGCAGCCGGCGTTGCCGCTACCCGCTGGAGGAGTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //