Array 1 1676-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUCM01000013.1 Escherichia coli strain CVM N36396PS N36396PS_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1675 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 1614 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 1553 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 1492 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1431 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1370 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1309 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 1248 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 1187 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 1126 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 1065 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 1004 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 943 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 882 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 821 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 760 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 699 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 638 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 577 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 516 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 455 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 394 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 333 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 272 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 211 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 150 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 89 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //