Array 1 22811-21624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000179.1 Frankia sp. CN7 NODE_122_length_32792_cov_41.110500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 22810 37 100.0 34 ..................................... AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACA 22739 37 100.0 36 ..................................... TTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG 22666 37 100.0 34 ..................................... GACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGC 22595 37 100.0 35 ..................................... GGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCC 22523 37 100.0 35 ..................................... GCTCCACACGCGTGTGGTAGCGCGGACGAGGACAT 22451 37 100.0 34 ..................................... TCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGA 22380 37 97.3 34 .........................A........... GACACGCTTGTCCAGGAAGCCGATCAGGGGATGG 22309 37 100.0 36 ..................................... CCCAGCCGTAGCCGCCGTCCAGCTCGTCGTCGTCCG 22236 37 100.0 34 ..................................... ATATAGTGCGCGGCGTTCAGCTCCCACGGCTGAA 22165 37 100.0 34 ..................................... CGCAACATCAGCATCATCGTCACGGCGAACGCCG 22094 37 100.0 35 ..................................... GACTCCCGCCAGGTGCTCGTGAGCGAACACCTTGA 22022 37 97.3 35 ................................C.... CTCGTCTGCTCCGCCCACGGCTGGGTCCGCCGCGG 21950 37 100.0 36 ..................................... GACAAATACCCGGGCCTGATCTCGTGTGTGATTCTC 21877 37 97.3 35 ...............T..................... ACGCAGTACACGCGGGTGGTTGCGCTCCACGCTGG 21805 37 100.0 37 ..................................... CACATCAACCCGGCCGGCACGGTCACCTACAGCGAAC 21731 37 97.3 34 .......A............................. GACACTCGCCCCAACGGTGACGTTCCATTTTCTG 21660 36 73.0 0 ....T..ACC..GG.....T.-.....TC........ | G [21656] ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 97.8 35 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : GCGAACCTGCTTCGGAACCCGAAGCACCCCCAGAAACACCGGTACCTTCTCAACTCTAAAACGGGACGAACCGGACGTCGATCTTCGTGTACAGGCGGTCCGGCATGTTCTAATTTAAGAAATCCCTGCTCAAGCAGGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTACGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACCGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG # Right flank : CTGTTGCCGATAGGCGACGCCAGGGCATGAGTGCAAGCGGCGAGGGGATCCATCTCAGTGGGTCACAATGCGGGCTCCTATACCTACGACCCTGCGGCCATTACGAGAAGCATCGATCTTCCCTCCAGGCACTGGCCGCGAAGGGAAAGGATTAGGCGGGCAACAGAACAGGTCGGCACTGAGACCGGCCGTTGGAGCGATGTGCTTGTCTTCGCCTGGTAAGGTCGGGCCTCCTGCTCGAGGAGCATGGTGTGCTCTGATCGTCAGGTCAAGGATGCGGGAATGTCATAAAGCGTTGATGCTAGGTCTTCGCGAGTCTCCGTATTTTCGTCGATCGCTCTTGCGTCCCTGGGGTGGCCGGCGTGATTCTCCTGACCGGCGGAATTCGCTGTGGCTCTCGGAGCCGGTCAGGAGGGTTCAATGACTCAGCCCGCGCCGTACTCGATGCCCGGTAGCTCTTCGTCAGCATCAGGGTGGTTCGGCCCCTTGGCGTCGCCGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.80,-15.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 23173-22991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000179.1 Frankia sp. CN7 NODE_122_length_32792_cov_41.110500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 23172 37 100.0 36 ..................................... ATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTAC 23099 37 100.0 35 ..................................... CGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGA 23027 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : CCAAGCCCGCGTGCTCGCCCGCCACCTCCGGGGCGACCAGCCCAGCTACCTTCCCTGGAGCCCGGCCTGATGGACCTGCTGGTCACCTACGACGTCGACACCACCAGCACCACCGGCGCACGCCGCCTCCGCCGAGTCGCCAAGATCTGCGAAGGCCACGGAATCCGCGTCCAGAAGTCCGTCTTCGAGATCGTCTGCACCGAAGCACAGCGAGTTCTCCTCGAACACCAGCTCCGGGAGACCATCGACCTCCAGCTCGACAGCGTCCGCATCTATCCGCTACCCATTCGCTCCCTCGACACCGTCAGCCAGATCGGCACCGGCGTCCAAGCCCACCACCGCGGCGACCAGATCATCTGAACGCGAACCTGCTTCGGAACCCGAAGCACCCCCAGAAACACCGGTACCTTCTCAACTCTAAAACGGGACGAACCGGACGTCGATCTTCGTGTACAGGCGGTCCGGCATGTTCTAATTTAAGAAATCCCTGCTCAAGCAGG # Right flank : AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.80,-15.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 31680-32724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000179.1 Frankia sp. CN7 NODE_122_length_32792_cov_41.110500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 31680 37 100.0 34 ..................................... GGCAGCAAGGAGTCGCGCGCCACCTGGTGGTCGC 31751 37 100.0 36 ..................................... GCCGCCGGTGAGCGGGATGACCCAGAGCGGGTGCAT 31824 37 100.0 35 ..................................... TACGAGTACCCGCGCGGCGGGCAGACCGTGACGGG 31896 37 100.0 36 ..................................... GTCGTCACATAGGCCGCGGCCGCCACCAGATCGGTG 31969 37 100.0 36 ..................................... CGCTCTACACCGCGATCGGTCTGCCACTCGTCCGCC 32042 37 100.0 33 ..................................... CACTTGAGGTACGAGTTCGCGCCCCAGTCGTAG 32112 37 100.0 36 ..................................... ACCCCAACTGGCCAGGCAAAGGGTGGAAACCTATTC 32185 37 100.0 36 ..................................... TCGACCCCGTCGCCGGAGGCGGTCATCTGGTTCAGG 32258 37 100.0 34 ..................................... AGGTGATGGACAATCGCGATCACCGGGTTGCCGC 32329 37 100.0 36 ..................................... AGCTCGCGGGCGCGCGCGAGGGCGGTGCGCAGGGCG 32402 37 100.0 34 ..................................... CGGGTCACCCTGCGGACGCTGCTGTCGGAGGCGG 32473 37 100.0 34 ..................................... TGAGCATCGAGATGGAACGGCCGGACCCGACGGG 32544 37 100.0 35 ..................................... GACTCGTGGGATGACGACGCCCTGCGCGCCCCGGA 32616 37 100.0 35 ..................................... GTCTGCTACACCTCCGACCGCCGCTGGCAGGCCGA 32688 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 100.0 35 GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Left flank : ATCGACAGACTTACCGCCGGCCGTCACTCGGCCGCCGCCGGCCGCCTCCGACGCCAGCAGACCCGCCTGCCAGGCACACGACGCCTTACCCACGTCATGCGCCTCACCAAGAAACCGGCCCAGGTCACCAGCGCCGAACGCCGACGCGAACCCCTCGGCGAGTTGCCCCGTACCCCACAAATGATCAACTAGCGTGTGTCGCCGACCAACAGCGTTCACGCTGTGCGCCCACAGCACCGCATCCCCCCGGTACGTCCGTCGCCATGCCCGACCCCCGTCATCAATCGGACCGCCACATAGAACCGCGCGGGTCCGACAAAATCGGGCCACCGGCCCACAGCCCCCCGGACGACATCCGACCAGTCGGCGATCTAGGAACCCGAAGCTCCCCCTGAACCACCGGGACCTTCCGAAGCAGAAATCAGCACAAACCGGACAGGACTTGCCAGCCAAGCCGATCTGTCGGCACCCTGGCATCGCAACCTCCCTGCTCAGGCAGG # Right flank : GCCGCCGACGACGAGCTCGGCATCACTCGCGCCCCGGCAGCGCCGAGGCCCCGGCCGCGGCGAGGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 41-2223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000206.1 Frankia sp. CN7 NODE_127_length_31768_cov_41.495819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 41 37 100.0 35 ..................................... TTCGACCTCGCCGAGTCGCGGGCGCGCACGCGCGA 113 37 100.0 35 ..................................... ATCCAGATCGGCGAGTCGGTCAACCGGGTGGCCAA 185 37 100.0 36 ..................................... CGGATCAGCGACATCGTCAACTACATCCGGGTTCAA 258 37 100.0 35 ..................................... ACCGGGTCGGCTTCTTCGGCAAGGCCGTCCGGGGA 330 37 100.0 37 ..................................... AGCGCCACTTGACGGCCGTTTAGTCGGACTACACGTG 404 37 100.0 34 ..................................... CAGGGCTGACGCCTGAGCGCGAGCTGCGCCAGCC 475 37 100.0 35 ..................................... GTCCTCTGCGTCCGCGACGGCCCGATGCCAACCGG 547 37 100.0 36 ..................................... GTTCTGCCCGTCATCAAGAAGACCATTGCCGCGATG 620 37 100.0 34 ..................................... CGCAAGGAATCGTTCATCCTGGACAACCTCACGT 691 37 100.0 34 ..................................... CACCAGATACCGTCCGGCCTGTTCCCCGTCGCGT 762 37 100.0 35 ..................................... GCCAGCGTGGCCGTGGATGCGGCGCGCTCCCGGAT 834 37 100.0 34 ..................................... CGCTGTCCGCGACGGCCGGCGTTGGGCGGCGGGT 905 37 100.0 26 ..................................... CTCTTCATCGTCGTGACCAGCAGCAC Deletion [968] 968 36 94.6 36 ..C..-............................... GACCCGGCCGACGCCGCGGCGGAGCTAGGCCCGATG T,AG,G,GA [978,982,985,988] 1046 37 100.0 36 ..................................... TGCTGGCGGCTCTCGGCACTGGAGATCCCCCTGTGG 1119 37 97.3 34 .................A................... CTCCACGCGATCCGCCACGCCCCCGAGCAGATGA G [1141] 1191 37 97.3 37 .............................A....... ACCGTCTGGCTCGCCCCGGGGATAGTCGCGCCGCCCG 1265 37 94.6 35 .......................A.....A....... GACACGATCGGCGGGCAGGGGCATCTGATCCAACC 1337 37 86.5 35 ......TT.....T.......T.A............. GGCGGCATGATCACCTACTGGGGTGAGGAGTCGGT 1409 37 89.2 34 .............T...........A...A.....G. GAGCAAGTCATGCTGGGCCAGTTCGAGTGGGAGG 1480 36 91.9 32 .............T....-..........A....... GGCACTCAAGCCGAAGATCTGGGTGACGCCGT 1548 36 91.9 34 ......G..-...T....................... CCGGGCGGGCCCGCATAGGCAAACTCGGCCCGGC G [1570] 1619 36 86.5 36 ....T.............-..A.......A.T..... TTCGCCGACGTCATGCCTCCTGCCGAGTACTTCCAG 1691 37 81.1 35 .........T...TTTA...C........A....... GACGCGCCTGGCGGCGAGCGCGGCGGGCCAAGTGG 1763 37 75.7 32 ATG......T...TT.....CT...........G... TACTACGACCCGGTAGGCGGTGAGAACGTGGA 1832 36 91.9 34 .............T....-.........A........ GACGAGATGATCACCAGCATCCGCCATTCCGCGG 1902 37 81.1 33 ..G......GA..TT.....C........A....... ATGTCGACCATCGTCAAAACATCACGGCGCAGA 1972 37 78.4 37 ..G......G...TT....TC........AG...... AAGCACGCCCGCGAGGTGATCGCCGAGCACGGCGCCG 2046 37 94.6 35 .............T...............A....... CACGATGCGGCCCGCGACGCCGGTGGGCGCTCGGA 2118 37 97.3 32 .............T....................... CGGATGGCCGAGGCTGGTGCTCACTTCCGGGG 2187 36 78.4 0 ..........C..T........C..C..C.-G.T... | G [2208] ========== ====== ====== ====== ===================================== ===================================== ================== 31 37 93.8 34 GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Left flank : CAACCGGATCAGCGACATCGTCAACTACATCCGGGTTCAAG # Right flank : CCCGCCCTATCGCTGTCGCTGTTCGGCGCTGGGGGCGAACTGTTTGATCCAGCCGCATCGAGGTGCGGCTGGTATCTCGGCCGCAGGGTCCGGAGCCCGTAGCACCCGGATCGTCGAGGGAAGCCCCTCCGGGATCACCGCTTCAAGACGCTGGCTCTGGCTGGCCGACTGAGCGGTGGCCTGCCACTCCCCTGCCACGTGCACCAGAGCGACAACTCGTCGTCCAGCGACGGCCAGGCCGGTCTCGATGCCGAGGGAGCGCGCGAGCGCGGCGAGCGTCAGCGCGAACTCCGCGGGTGAGGCTTCTCCGGATCGCAGCACGGTGGCCGTGGGCCGCAGCGCGTCCTGGTTCACGCCGCGTAGAAGGAGGTCGAGGTTGGTCCGCAGGGCGAGGACGGCGAGCGTCGGGTCGATGCTGTGCTCGGCGAGTGCCAGCGCGACCGGTCGCAGCTGTGGGTCCGAGGCCAGGAACGGGAGGAGTTCCTGCCGTCGGCGTTGAC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGCCCCGGCCTCGGCGAGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-62] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 27543-29150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================== ================== 27543 28 100.0 33 ............................ ACCGTCTTCGCCCAGGCCATCCGGTCGTACCAG 27604 28 100.0 32 ............................ TTGATCCCGGAGTTACCGAGCCCGAACCGCTG 27664 28 100.0 33 ............................ CAGCGCATCTCGCTGAACGAGACACCGAGGCGC 27725 28 100.0 33 ............................ TACGTCGCACCCGGCGACGCGCAGACCGTCGCG 27786 28 100.0 33 ............................ GTGCAGGACGGGCCCAACAACCCGCACGACTGG 27847 28 100.0 33 ............................ CCCGCGAGCAGCAGCTTGCGCAGCTCGTAGGAC 27908 28 100.0 33 ............................ GACTTGGTCTACCAGCAGATCGATAACCCCGAG 27969 28 100.0 33 ............................ CCAGGCGCCAGCGCCTCGATAAGCAGACCGAAG 28030 28 100.0 33 ............................ TACACGCACAGCGTGTTCATCACGCCCATCGAG 28091 28 100.0 33 ............................ CCGTTGGTGGCGAGGTTGCCGGTGTCGCCGCCG 28152 28 100.0 33 ............................ ACTACACCTGAGCCGAGTTGGTCCATGCGGGAC 28213 28 100.0 152 ............................ GATGGCGCGCATCTCCGAACCCCCTCGGCGTCGGGAAGATCCCCGCGCGGGCGGGGGCGACACCGCCGTGCCGATGGAAACGGCCCGGGTGCCGGGAAGATCCCCGCGCGGGCGGGGACGACGACCAAGCTCCAGCACACCCCGACCGGCGG 28393 28 96.4 33 .............A.............. GCCCTGGCTGGTACGAGCGGGAGACGACGCGGC 28454 28 100.0 33 ............................ GTACGGGATGGAGCCGACCCATCCGAGGGCGGG 28515 28 100.0 33 ............................ GTGACCTATCGTGGCGGAGACTGGTACGACCAT 28576 26 92.9 33 ..............--............ TGGGAGGCACGGCGGGCGCCATCGTCGCGGACA 28635 28 100.0 33 ............................ ACCCAGTGGTCATCCGGCGGCACGTCAGGGTCG 28696 28 100.0 33 ............................ CAGCGTCGCCAAGCTGCCAGGCAAGACCGAAGG 28757 28 100.0 33 ............................ GCGTTGGAACTGGCCTGGGATGGCTCCTCCGGA 28818 28 100.0 33 ............................ GTCCAGTCCAGCCACAGCGGAACCCGCCAGTAG 28879 28 100.0 33 ............................ GCGGTTATCGTCTGCCAGACGACACGCCGCCGC 28940 28 100.0 33 ............................ GCGCCTCGCGCACCACGTCAGGGACCAAGCCAG 29001 28 100.0 33 ............................ TAGTTACGGGCCCGGCCCGCGTTACGCGACCAG 29062 28 96.4 33 ..........T................. ACACGCGAGGCCCCGCCGACGGTCCGGCTGGTA 29123 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================================================================================================================== ================== 25 28 99.4 38 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TCACCGACGCCCTCGACCTGCTCGCCGGAACCCCCGCCCTCTACCCCTGGGTGGACGCCGAGTTCGGCTCCGAGCTGACCACCACCGCCATCCGCGCCGCCCTCCTCCTCTCCGAGCTCCACCTCGACAACGGCGACCACCAAGCCGTGCTCGCCGCGACCACCCGCGGCCTGGCGATCCAGCCCGCCCACCCCGGACTGTTCGCCCTACGCCTCCGCGCCCACCACGCCGCCGGCGACCCCACCGCCGTCACCGCCGACTACCGCGCCTACCTCCGCGCCGAACAAGCCGACGACCCCGACGCAGACACCGACCCCGACCTCGCCCACCTCCACCACACCCTCACGAGAAACACCCGCCGGCCCCGGCCGACCGCCACCAGCTCCCGCGACGCCGACGATCTTGACCCCTGGTAGAAGCTCAAACCGCTGACAGCAAATGTGACAGCGACAAGGGACAGCGTCGCCCCGCCCGGCAGGCGCGCCGGGAGCATGGCGCGT # Right flank : CACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGGGGACTGGCAGGGTCGCGTATTCGACTGTTGCGAGTTCGGCCGGGGCAGCGACGAAGTTTGGCGTGGGGCGGCGATGATGCCGGGTATGGGGGGATCTTCGCGGGATCGGGTGCGTCGGACCGGCATTGTCGCGGTGCTGTTGCTGGTGGGGTCGGTGGTGGCCGCGGTGGTGCTCGCTCGGCGGTATCAGCTGGGTTCGGGGACGGCCCTGGTCGGTTTGGTGGGCGGGGTCACGGGGCTGACGGGGCTGTGGCTGGCCTGGTCGGCGTACCGGGCGGACCGGGAGGAGGCCGCAGTCGGGGAGTTGGACCTGGCTGGGGTCGCTGACCAGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 34560-36966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34560 28 100.0 33 ............................ CTGTAGTCGATGAGCGGGGCGGGGAACAGGCGG 34621 28 100.0 33 ............................ ACACCGCTACGGAGGCCGTGGATGCTGGTTAAG 34682 28 100.0 33 ............................ GCATTCCTCGGGGAATTAGGCGAGTATCCGGCG 34743 28 100.0 33 ............................ TCCAGTCGGGGTGGGTGGCGTCGAACTCGGGAC 34804 28 100.0 33 ............................ CGCTCGCACCGGCCGACCTGGACCAGGTAGGCC 34865 28 100.0 33 ............................ CTTTCCGGCGGCATGGAGGTCGTGTCCCGCCAG 34926 28 100.0 33 ............................ GTGGTCCTGGCCCTCGCCGGCGGGGGCCAGGCG 34987 28 100.0 33 ............................ CCTGCGCTACCCCAGAACAGCCGCCCAACCTGG 35048 28 100.0 33 ............................ ACGATCAACCGCTGTTCGTCGACGTCTTTGTGC 35109 28 100.0 33 ............................ GCCCTGGTCTGGATCGCCGGCGCGATCTGGTCC 35170 28 100.0 33 ............................ GCGCGGATCGCGGGTGGCAGGATCAGCTCAGTG 35231 28 100.0 33 ............................ GCGTTCTCGACGATCGCCCGACCGTCGAGAGGG 35292 28 100.0 33 ............................ CCGGCCCTCCCCGGACGGGTCCGTCCTACCGCG 35353 28 100.0 33 ............................ GGCCGGGACCACCAGGCCGTCGCCCGGGACGAG 35414 28 100.0 33 ............................ CCGACCTCCATCGTCAGGTCCTTGAGCAGGGAG 35475 28 100.0 33 ............................ TCCGAGATGCGCTCGGGCAGGGCCGCCGTCAGC 35536 28 100.0 33 ............................ ACAGCGTTCCGGCGGCGTCGCTGGCCATCAGGC 35597 28 100.0 33 ............................ CGCGCCTCCGTCTCCGAGCTCGGCCCGGTCGTG 35658 28 96.4 33 ..........................C. CCGAACCGGGCGGTGGCGGAGAACCGGCGGCCG 35719 28 100.0 33 ............................ TTCCTCGAGGAGAAGGCGGACGTCGCCGACTGG 35780 28 100.0 33 ............................ AGGTGGAGCCCGGACATGTCCTGCGGGTACGCC 35841 28 100.0 33 ............................ CGGGTCTCCGCGTTCGCCCGCCGGACCTCCGTG 35902 28 100.0 33 ............................ ACGGGCGGCGGCGCGGGCGTCCGGTCCGGTCAC 35963 28 100.0 33 ............................ CACTAGCGGAACCGGTAGGCGTCCAACCGTGGG 36024 28 100.0 33 ............................ TCCGAGATCGCCGCCGCCAGCGCTGACCTGCTG 36085 28 100.0 33 ............................ TTCGCTCCGCCCGCGCTGCGCGCGCTCGGGAAG 36146 28 100.0 33 ............................ GCGAGCGCGGCCTCGGCCTCGCGGGCGGCCGCA 36207 28 100.0 33 ............................ TGGGGCCGAGGGCGTACCGGCCGCGCACGCCCC 36268 28 100.0 33 ............................ ACCTACTACGGCCTGAAGGTCCCGAAGTGGGAG 36329 28 100.0 33 ............................ TATGAGGCGCCGAGCGGGGTGCCCACCTATAAC 36390 28 100.0 33 ............................ ATCGGCCCGTCCGCCATCGCCTCGGCCGAGGCG 36451 28 100.0 33 ............................ CCGCACAGCGGCGAGGCGATCCCGCTCGAACCG 36512 28 96.4 33 ................T........... GTCAGCAACCTGCGGCTGTCCTCGGAACTCACG 36573 28 100.0 33 ............................ GCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGC 36634 28 100.0 33 ............................ GGCGGCTACCCGAGCGGGGGAGAGGTTGTGGAC 36695 28 100.0 33 ............................ CGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAG 36756 28 100.0 33 ............................ TCGCGGATGGCGGTGATCAGGTCGTCGATGTCG 36817 28 100.0 33 ............................ CTCCGCGACCAGTGCACGGCGGCCGGTGTCCCG 36878 28 100.0 33 ............................ TAGAGAGCCACCTCGAATACCGCGCCCGCCTGA 36939 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGGCTCAGGCCGCGCACTCCGCGCAGATCCCCCAGCCACTCGTCGAGCATCTGCGGCTGCCACATCCACGGGAACGTGTCCGCGTGCACGGCGAACGCCCGCACCGCCCCGAGCCGCTTCTCGACGGTGCTCGCCGCCAGGTTCCGGGCGAGCTGCTGCGCCTCCCAGCCCGCCAGCATCGCGGCGAACACCTGCTCGTCCGGCCGCAGCAATGCCACCCCGTCGACCAGGTGCAGCGCCGACGAACCCGCCTGTGGCCCTCCCAAACCCCGCTCCATCCCGCCCCTTCCGCCCCGCTTACATCCGATGAAGGGATATTTCACCAGATGAAAGACGGTGGTGGATGACCAGGTCAGCGGCTCCTTCGGCGCCCGCCTTGGGGCCGAGCCAGCGCGCGAAGCCCAACGGCCCCAGCGCCTCCTACGGGAGTGCGTTCAGACGCGAGTGCTTCATCCGATGAAACCCGCAGCGGTCGGAGCAAGATATGTAGAAGTAATACG # Right flank : CTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGACGACTCGATCCGGTGGGTCGGCCCGGACAATGAGACGGGAAGATCCCCGCGCGGGCGGGGACGACGTGAGCGACTGGATCGAACGATCCAAGGCCACCGGAAGATCCCCGCGCGGGCGGGGACGACGATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGGGGAAGATCCCCGCGCGGGCGGGGACGACAATCATCGACCGTTCAAGCGAGTCCGCGAACTCGGAAGATCCCCGCGCGGGCGGGGACGACCCGTCGAACGAGCCCGTGATCGTGGGCACGTCGGGAAGATCCCCGCGCGGGCGGGGACGACCTTCGATGTCCCCGGCCTCGGCCAGCAGGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 37160-38164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37160 29 100.0 32 ............................. GTGAGCGACTGGATCGAACGATCCAAGGCCAC 37221 29 96.6 32 C............................ GATGTTGTGCCAGGAGCAGGCCGTGTCGAAGG 37282 29 100.0 32 ............................. AATCATCGACCGTTCAAGCGAGTCCGCGAACT 37343 29 96.6 32 C............................ CCGTCGAACGAGCCCGTGATCGTGGGCACGTC 37404 29 100.0 32 ............................. CTTCGATGTCCCCGGCCTCGGCCAGCAGGTCG 37465 29 100.0 32 ............................. GCTTACGTACAGTCGATGGCCTCGCTGTTGGA 37526 29 100.0 32 ............................. ACGCCCACGGAGAACGTCACGACCGCCACGCC 37587 29 100.0 32 ............................. GTCGTCCGTTGCCCGGGTGAGCTGGACAAGCC 37648 29 100.0 32 ............................. CCGTGACCCCGGCGGAAGGCATCGTCATCGAC 37709 29 100.0 32 ............................. CGCCCCAGGTCGTCGGGGCTGTCCAGCGAGTC 37770 29 100.0 32 ............................. CTCGTTGATGTACGGCAACATCGTCGCGCCCA 37831 29 100.0 32 ............................. GCGGCCGGGTCCATCCGCAGCAGCGCGTCCGT 37892 29 100.0 32 ............................. ACGACCCGGCGGCGGCGGCCCAGCATCGGGGC 37953 29 100.0 32 ............................. CCGACGACCTTGAGGCAGAACCGCAGGACCAC 38014 29 100.0 32 ............................. GGCGGCCATCAGGTACCGCCGGCGGTCGCGGG 38075 29 96.6 32 C............................ GTCGTACCGGCCGGACCAGGCGGTACGGACCT 38136 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GGGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : ACGGCGGCTACCCGAGCGGGGGAGAGGTTGTGGACGGAAGATCCCCGCGCGGGCGGGGACGACCGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAGGGAAGATCCCCGCGCGGGCGGGGACGACTCGCGGATGGCGGTGATCAGGTCGTCGATGTCGGGAAGATCCCCGCGCGGGCGGGGACGACCTCCGCGACCAGTGCACGGCGGCCGGTGTCCCGGGAAGATCCCCGCGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGGGCGGGGACGACTAGAGAGCCACCTCGAATACCGCGCCCGCCTGAGGAAGATCCCCGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGACGACTCGATCCGGTGGGTCGGCCCGGACAATGAGAC # Right flank : CGCTTGCTGAGCTGGGGGTTTAGCGGCGGGGGCGGGCGAACAGTATCAGTCCGTCGTAGTCGATGGGTTCGCCGCGGTCGCGGCCGGCGGTGCGGACGGTCCAGTGTTGTTCGTTGTCTGCTGGTTCGATCATGATGGCTTGGCCGTCGCCGACGCGGTGGGCGAGCAGGGTCCAGAGGCGGTCGCGGACGCGGGCGCTGGGGTTGCCGACGAAGACTCCGGCGGCGACTTCGATCATCCAGCGGGTGAGGTGGCCGCGCAGGCCCTGGGCCGTGGCGATGAGGACGACGACGGTCACCAGGGTGGTGGCTGTTCGTCGATGTCGGGTCCGGTGACTCCGACGATGCTGTTCTCGGGTGAAAGGTCCGCGAGGTCGGCTGCCCAGTTGATGCCGCCGGGGACGGCGCCGTCGAACTCGTCCCAGAGGTGGAGTGAGTCCTGGTCGGGGATGTCCGCGTCGTCGCCGAGGAGCAGGGTCTTGATGTCACGGACGATGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 48396-47880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48395 28 100.0 33 ............................ CGGTAGAAGACGTCCTGGACGTGGTAGCCGTAG 48334 28 100.0 33 ............................ CGGAACACCCTCGGGGCCGGGCCGGGCCGCGAG 48273 28 100.0 33 ............................ GCCAATCATTGGCATTTATGACTGTTCTCTGCT 48212 28 100.0 33 ............................ GCCGCGGTCGTCCAGCCCAGCGCCAGCGCGGTG 48151 28 100.0 33 ............................ ATCAGCCCGTCCGCCATCGCCTCGGCCGAGGCG 48090 28 100.0 33 ............................ GTCTTACGCAGCGTCAGGTCGTGGCGGTCGCGC 48029 28 100.0 33 ............................ GAGCTGCGCCGGAGGTTGGAGACATGAGCCCAG 47968 28 100.0 33 ............................ GTGCCCTGTCGACGGCGCCGGGCACCGTGGTAC 47907 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CACGAAGCGGGCCTTCGCCAGCTCCTTCTCCAACCGCTCCTTCTCCGCCCGCAGCCTTTCCATCTCACGGTCACGGTCATCCACCGGCGGGCGGCCCTTCGGCTTCGACAACCCCGCAAGCGCTCCCGCGTCACGCGCCTTACGCCACTCCACAATATGGGCTGAGTACAGCTTCTCCCGGCGCAGGATCGCACCCTTCGCACCCGGGCCCGTCGCCGCCTCGTACTCCGCGAGAATCCGCAGCTTGTACCCCGGCGAGAACTGCCGCCGCCGCGCCTTCGGCTCCACCTCAGGATCCGGCCGCCGGCCACCGTCCTCACGCTCGTCCACACGGACATCATCGACCAGGCCCAGCCCGGTCGTCACCGCCACCACCACGATCTCCCTCTCCCAACTCCGCCCATGTCATGAGATACTAGGCCTAACCTGTCTCAAGTCATCTTGACGGGTAGGGGGGCGGGGACGACGCGGCGCCGCGCGTACGACTCGGTAACCGAGCC # Right flank : ACTTGCTGAGCTGGGGGTTTGGCGCCGGGTCTGGACAGAAAATATCAGTCCGTCGTGGTCGAAGGATCGTTGCAGCCACAGTCGGTCGGAGGCGGTCCCCGCTCCATGGGCGCCAGGCGAAGCCATTTGTGCGTCCATGCGACCCCGGCGTGATCGAGGTGCGCCACAAGTGATTCAATGCGTGCGTCAAAGCCGACGACGGGGGTGGGCGCCGTGCTTGATGCGGCCATGGCTGTGGTGTGGGGGAAGTCGGATGCGCAGGGGTCGCCGCATCTGCTGCTGGGTCATCTGTTGGATACGGCGGCGGTCGGTGAGTTGATCTGGGATCGGTTTCTGGCTCCGGTGGTCAAGGGCCATCTGGACGAGGTCAGTGGCGGGCGGGGTCGTTCGTTGTTCGCGTTGCTGTGCGGTCTGCATGATGTGGGTAAGGCGACGCCGGCGTTTCAGTCGAAGGATGGCGCGCTCGCCGTGCGGGTGCAGGCGGCTGGTCTGGGTTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 5 52413-50068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52412 28 100.0 33 ............................ CCTCGGGCTGACCGAGGAGGACGGCACCCCGAA 52351 28 100.0 33 ............................ GAGCACCAAGCGGGCCTGTCCGCCGCCATGCAG 52290 28 100.0 33 ............................ CGATCTTTCTTCGAGTTCAAGTACCTGCGGGAG 52229 28 100.0 33 ............................ GGACGGCGCCGACTACGCCCGCGGCCAGAAAGA 52168 28 100.0 33 ............................ CTCCGCCCCCGCGCCACCGCCAACGGCGATGGC 52107 28 100.0 33 ............................ GACTCGTCCCTGCGCCCGCTGACCTGGCACGAC 52046 28 100.0 33 ............................ GCGCGGGCAATAACACCCTCAGCATCCCGACAG 51985 28 100.0 33 ............................ GAGTTCGCCTACGGCCGGCTTCGCGCGGTCACG 51924 28 100.0 33 ............................ GCGGCCGGGCCGGTCGAGACCGACGAACCGCCG 51863 28 100.0 33 ............................ GGGGCGCTGTCGGACGTCACCGCCACGCCCAGC 51802 28 100.0 33 ............................ CGCGGTGTCGGTCGGACGCGCGGCCCGAAGTGC 51741 28 100.0 33 ............................ CAGGCGACGAAGCCCCTCGGCATCGCCGAGCAC 51680 28 100.0 33 ............................ AGGCCGAACTCGGCCGCCCAGGCCCGCAACTCC 51619 28 100.0 33 ............................ GACCTGCTCAAGGACACGGAGGGTCGCTACTAC 51558 28 100.0 33 ............................ CACCACAGATCAGTACCGGCGGGTAATAAACGC 51497 28 100.0 33 ............................ TCCGTCCGGTAGCCGGTGATCTCCCCGGCCCGG 51436 28 100.0 33 ............................ CCCTCGGCGGACGAGGCCCAGGTGAAGAAGCCC 51375 28 100.0 32 ............................ CGGGCGCGCTGACGGCGGAGCTTCGCCTGGAT 51315 28 100.0 33 ............................ GCGCGCGGCGACATGGACGCGGCCGGCGCCGCG 51254 28 100.0 33 ............................ CCCCTGTACGCAGGCAACGGCCTCGGCCCCAGC 51193 28 100.0 33 ............................ CCTGGGAAGGTCAGCAACGCTGTCATCAGCCGC 51132 28 100.0 33 ............................ GACATCATCCACGGCCAGATCACGATCAGCCCG 51071 28 100.0 33 ............................ GCGGTCGTCGTCTGGCCGTACACGCCATAGGCC 51010 28 100.0 33 ............................ CGTGATGTAGCTGCCGCCACGTTCCAAGCCACC 50949 28 100.0 33 ............................ GCTGCGGTCGCCTCGAAGTCCGGCGTGATCGAG 50888 28 100.0 33 ............................ ATGCTGAACCCGCCGAACTCCGTCACCCGGTAG 50827 28 100.0 33 ............................ ACGGGCTCGGGCTCGCGTCGGGTCTCGCGTGGA 50766 28 100.0 33 ............................ TCACCTACCGTGATAGTCGTGATCAACGCTCTG 50705 28 100.0 33 ............................ TTGACCGCCGGATCGACGGTTGGAAGACGGGAG 50644 28 100.0 33 ............................ CGCACCCAGCCGGCCGCGATGTCCGCGGACGCG 50583 28 100.0 33 ............................ TGATGTCCGCACGCCGTCCGGTCCGCATCGCGA 50522 28 100.0 33 ............................ AAGATGCGACGTTTCCCGTGTGGCTGTTGGTCA 50461 28 100.0 33 ............................ CGGGTGCCCTCGTGGTGCAGCAGGGCGATCGGG 50400 28 96.4 33 ............G............... CTTGACCTCGACCTCGTACTCGACGTCGAACGG 50339 28 100.0 33 ............................ CTCTCGGCAAGCCGGACGTGCCAGGCGGTCGGG 50278 28 100.0 33 ............................ TAAGCGGCGACGGATAGTGAACCGAAACGGCCG 50217 28 100.0 33 ............................ CACCCGACCGGTGTGGCCGGTGAGACGGCTGCG 50156 28 100.0 33 ............................ GCCTGGACGACGCCGAGCGTGCGCGCGTGCAGG 50095 28 78.6 0 .....................AAT.CGT | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.4 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGTCGGCCTGGTCAACGGGCATGACGCGGTCCGGGGAAGATCCCCGCGCGGGCGGGGACGACCTCGTCGTTGAGCCGGCCGAAGGCGGCGATCTCGGAAGATCCCCGCGCGGGCGGGGACGACGACGTCGCGGCGCGCGGCGACGACCATGGCGAGGGAAGATCCCCGCGCGGGCGGGGACGACCACAGGGCCACCAACATGGGCCGGGCTGCGGTGGGAAGATCCCCGCGCGGGCGGGGACGACGCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAGGGAAGATCCCCGCGCGGGCGGGGACGACCTGCGCCGCCTGCTCGGCGAGACCTACCTGTGGGGAAGATCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGGCGGGGACGACCCTCGGGCTGACCGAGGAGGACGGCACCCCGAA # Right flank : CAACCTGATTGGGACAGCGTTGTCCAGGAATTAGCTACTGGTCGCGTCTGAATCTACTGGCTGGTCTTCCTCGTGCTGGGGTCGGTTGATCCAGGCTGGCTGGGGCGGCTTCGGCGGGGTCGGGGGCTGGCGGACGAACCTTTCGGGGTGGGCGGCGTAGGCCGCGTCGAGGACTCGGGCGCGGGCTTCGCGGACGAGGGCCGCTTCGCCGTGGTGGACGGTCGCTGGGGTGAGCAGGCCGATCCCGGAATGCCGGTGATCGTTGTTGTAGTAGTCGAAGAATGTCCGGCACCAGACCCGGGCGTCCTGCAGCGTCGCGAACGAGGACGGAAAGTCGGGCCGGTATTTCAGCGTCTTGAAGTGGGCCTCCGAATAGGGGTTGTCGTTCGACACCCGTGGCCGGGAATGCGACCGGGTGATGGCAAGATCGGCGAGTAGCAGCGCGACGGTCTTCGAGGTCATGGAGGTGTCGCGGTCGGCGTGGATCGTCAGCTGGTCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 6 54647-52607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYU010000136.1 Frankia sp. CN7 NODE_16_length_101034_cov_34.360906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54646 28 100.0 33 ............................ CGGCGCGAACACCCCCGGAACCGGCTCCCCGGC 54585 28 100.0 33 ............................ AGCACCTCAGGCAGTTCGACACCTCGGCACGGG 54524 28 100.0 33 ............................ TCGTGATCCTTCAGCCGGCCCACCAGCCGGGAG 54463 28 100.0 33 ............................ AAGGCCGCAACACAGATCGTCCTCTGGGCCCAG 54402 28 100.0 33 ............................ CAGGTAGCGGGCGCTCTGGCTGGGGTCCACCGC 54341 28 100.0 33 ............................ GCCACCTCGAGCGCGCGGCGGCCCACTGGCCGC 54280 28 100.0 33 ............................ CATTCCCGAGCTCCATGCGAACCACAGGCCAGC 54219 28 100.0 33 ............................ GGCGCGTGACCCCCGTGAAGCCGTCGGAGAAGC 54158 28 100.0 33 ............................ CCAAGCTGCAACTGGACGAATGGCAACAGCATG 54097 28 96.4 33 ...............A............ TCGACCTTGAGGTTCTGGTTCCCGACGAGCTGC 54036 28 100.0 33 ............................ CACAGGCACGACGCCCCGCCGTACATCAGCAGG 53975 28 100.0 33 ............................ CAGGCGAAGGCCCACCGCGCCTGGGCCGACGAC 53914 28 100.0 33 ............................ TCGGCGAGCTGCAGCGGCCAGCCCCACGCCGCG 53853 28 100.0 33 ............................ CGTGGCGGGGAGGGTGCGGTGTGCTCGCGGATG 53792 28 100.0 33 ............................ CCCTGCGTCATCGCCGCGACCAGCGGAGCCGCG 53731 28 100.0 33 ............................ AAGGCAAGAACGCGCGCGGCATCCTGATCGGCG 53670 28 100.0 33 ............................ CGCCCGTGAGGCGCCCAGCCATCCACCACAGGC 53609 27 92.9 33 ...............A......-..... CAGCCCATCGCGGCTCTTTGTCCAGACGTCGCC 53549 28 100.0 33 ............................ CGGCCGAGAGATCGTCACGGCGATCGGCAACGT 53488 28 100.0 33 ............................ GTCATCAACGGTCCGGTGACGTTCCGCGCCGGG 53427 28 100.0 33 ............................ ATCAACGGGGACACGAACGGTCGCGGTGGTGTG 53366 28 100.0 33 ............................ GGCTACCGGGGCGCAGTGATGCACTCCAGTGAG 53305 28 100.0 33 ............................ GCGGTCGCGATCCCGGTGATGGCGGCGATCGCG 53244 28 100.0 33 ............................ TGCGCCGCGGCGAGACCCAGCTTGGTCGGGATC 53183 28 100.0 33 ............................ TCCATCGCCGGGATGTCCCGCTCGGTCAGGAGG 53122 28 100.0 33 ............................ TCACCGCCGGCCGGATCATGGCCCTGACTGTCG 53061 28 100.0 33 ............................ CCGCCACCGCTACCGCCACCGGGCGCGGCGTAG 53000 28 100.0 33 ............................ AGCTACGGGCACACGATCAGTCGCGACCAGACG 52939 28 100.0 33 ............................ GTCGGCCTGGTCAACGGGCATGACGCGGTCCGG 52878 28 100.0 33 ............................ CTCGTCGTTGAGCCGGCCGAAGGCGGCGATCTC 52817 28 100.0 33 ............................ GACGTCGCGGCGCGCGGCGACGACCATGGCGAG 52756 28 100.0 33 ............................ CACAGGGCCACCAACATGGGCCGGGCTGCGGTG 52695 28 100.0 33 ............................ GCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAG 52634 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGAGGTGACCGGCCGCGGGGTCGAGGTTCGCCGTGTTCGGTGGTGTCGGAGCCGGTGACCGACTACATCAGGTTCGAGCACGCGACGACCGCGTCGAACGTCAGCGCCGGGGAGCAGGCCCGTTGGCTGCCCCGGCACCTGGCCACCGGCCTGTTGTTCCCGGCGAACGACTTCTGGGTATTCGATGGCCGGCGGGCCCAGTTCAATTACTTCTCCGGTCGGGGAGAGTTTCTGACGACCCGTCTGTCACCCGACGCGGTGATTGCGACGCAGTGCGCGGTGGCGTTCGAGGCCGCGTGGGAGCGTGCTGTTCCGCACGAGACGTATGACCCGGTCCAACACTGATCGCCCTCACGTCGGGCAGTCTTTCTCCTGTGCAGCCGTCCTCCTCCAATGCCCAACAGGCCCGTCAGCTTCCCGCGGACCGGCTTCGTGACCTGCGCCGCGACGCGGCTCTGACCACGATCGAGCTGGCTGTCGGCGCAGGTAACGTCACGAGC # Right flank : CTGCGCCGCCTGCTCGGCGAGACCTACCTGTGGGGAAGATCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGGCGGGGACGACCCTCGGGCTGACCGAGGAGGACGGCACCCCGAAGGAAGATCCCCGCGCGGGCGGGGACGACCCTCGGGCTGACCGAGGAGGACGGCACCCCGAAGGAAGATCCCCGCGCGGGCGGGGACGACGAGCACCAAGCGGGCCTGTCCGCCGCCATGCAGGGAAGATCCCCGCGCGGGCGGGGACGACCGATCTTTCTTCGAGTTCAAGTACCTGCGGGAGGGAAGATCCCCGCGCGGGCGGGGACGACGGACGGCGCCGACTACGCCCGCGGCCAGAAAGAGGAAGATCCCCGCGCGGGCGGGGACGACCTCCGCCCCCGCGCCACCGCCAACGGCGATGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //