Array 1 17934-16776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCC010000011.1 Streptococcus sp. S784/96/1 isolate S613367/18/1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17933 36 100.0 30 .................................... CAAATAGTTCAACCGTCGCTCCAAGTCCGT 17867 36 100.0 30 .................................... ATTGTTTCAACTATTGGAGGGTTCGCTGGT 17801 36 100.0 30 .................................... AAGTAATTTCAAGCCGTGAATCAACGAATT 17735 36 100.0 30 .................................... CTCAAATCAAAAGGAAAAATTTTCAATTCG 17669 36 100.0 30 .................................... TGGAATAGTTGTTTAATTGACTCATCTTAG 17603 36 100.0 30 .................................... AGGGAGTTACTCTATTAGGTAACACGGAAA 17537 36 100.0 29 .................................... CAACCACTGAAATTAACACCGGTATGCAG 17472 36 100.0 30 .................................... AAGTTTGACCTCCTAGCTTACTAATCGTCG 17406 36 100.0 30 .................................... AAAAGAAATCGCCGTAAAAATGATTGACCC 17340 36 100.0 31 .................................... CAAAATCATTTTGGCTAAAAAGGTAAATAAT 17273 36 100.0 30 .................................... TTGAAGAATTCCTTGAACAATAACTTGACC 17207 36 100.0 30 .................................... ATTATTGATATTTTACAGGCGCTCCTTGCC 17141 36 100.0 30 .................................... TTGTCATTTTTACAATCCTAACACAACAAC 17075 36 100.0 30 .................................... CTTTGAATTTACAGTATATAAAAAGGCAAT 17009 36 100.0 30 .................................... ATCCTAACGATGCACAATTGATGACGGTTC 16943 36 100.0 30 .................................... CTAAGACAAACCAGCAGTAAACACTTAGCT 16877 36 100.0 30 .................................... GAAATTTCGAGCTTATGCTCGGATTGTAAA 16811 36 97.2 0 ..............T..................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCGAAAC # Left flank : AATATTTCACAAGGAAGAAGATGGGAGCTATTGGGGTGAGTTTCCTGATTTCGGCGGTGGTACAGAAGGGGCTGATATTGAAGAAGCGATGAAAAATACACGTGAGATGCTAGAGAGTGTTTTAGCGACTTATTTGGATGAGGGAATACCTCTTCCTGAGGCAACAGCTATTGAGAATCTTAATGTTGAAGGTGGCTTTACAACCCTTATTCAAGCTAATCCAACTCCATTTTTGAAAAATAATAAGGCAATTCGAAAAAATGTGACAGTTCCAGAGTGGCTGGTTCGATTTGCCGATAGGGAGTCAATCAATTATTCCGAAGTACTGACTAAAGCTTTAGAAAAGCAGTTGCAATTATAATTAATATCCGCTTAAAACGTTGATTTTAAAGGCTTTTTGAGGTATAATAAAAGTAACAAAATGGAATTATTTGAAGCTGAAGTCTAGCTGAGACGAATGGTGCGATTACGAAATTTTCTAGACAAAAATGGTCTACGAG # Right flank : GTAAACATTGGAAAAATCCTTTCCATAAATAGTCCCTTCTTTCTTACAAAGTTATTATTACAGAAATAAAAAAAGTCTGAGACAAAAATAGTTCTCAGCGACAAAAAAAGCTAGAGCTTCCTAATAGCGGAACTCTAGCTTTTTAGTTTTGAGTTGTTCTTTTACTGTATTTTAGGAGATTATTGGCCATAAGTACCAATCCCATGTCAATTGTCACCTGACATTTGCCTCTTAAGTTACATCTTTTGTAACCCAAACAAGCCTTTATCTGCCCAAAGACAGGTTCCACATCAATCTTGCATTGAGCGAAAATCTGTCTACCTTCGGGAGATAAAAGTGCTTGGCATTCTTTAGCCTTTAAGTGTTGATAATGTTCGTTGATATACAGTCCCTTTTGAGGGCTAGTTCAGGTTCATCGGCGTAGTAAACCTTGATTTCCTGTTGAAAGTCCGTCTGTGTTTTCTGATGTTTGACATGGTGAAAACGATAGCACCACCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5254-4100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVCC010000042.1 Streptococcus sp. S784/96/1 isolate S613367/18/1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5253 32 100.0 34 ................................ AACACTTGGACGTGCTGAACCCTGTGTGACCGTG 5187 32 100.0 34 ................................ AACACTTGGACGTGCTGAACCCTGTGTGACCGTG 5121 32 100.0 34 ................................ TAATTGTTGCAGCGACATTATTTGCGATGTTATT 5055 32 100.0 33 ................................ ATTTATGTTTCCTTCCTAAAATCTGGGTGTTCT 4990 32 100.0 34 ................................ GATTCAGGAAATGTCACATTACTGACTCAGAAAC 4924 32 100.0 35 ................................ TTCGAGTTGATATTAAAAAGGGCTTTATCCATATT 4857 32 100.0 33 ................................ TTATGTCTGGGACACTAAAGCTGCTGACAATGG 4792 32 100.0 33 ................................ TTGGTTACCAAGGAGCAGTACGAGGCTATCAAG 4727 32 100.0 34 ................................ TTTGTTAGATAAATCAAGCATCGCTAGTTTAGCG 4661 32 100.0 34 ................................ TTGCTAGCAGTTAAGCTACTAGAAAATTTAGAAC 4595 32 100.0 34 ................................ TTGTAAGACTTTGAACGTTACACTCATATGATCA 4529 32 100.0 34 ................................ GCACATGGTCAATACCTCCTTTTCCAAGGCGTAT 4463 32 100.0 34 ................................ TTCTTGATACGGTCTAAGCTGCATTAGAATCCTC 4397 32 100.0 33 ................................ ATCAATTCCACACCCTTACCTTGGACATACTTC 4332 32 100.0 35 ................................ TGTCTTTTTCTATGCATTTGAGATGTTCAAGACGT 4265 32 100.0 34 ................................ ACGTTGAATATACTGTTGCAAGGCATGTTTAATA 4199 32 100.0 34 ................................ TGGGATTTTAGCAAAAGTTCTGTGTATAGTCAGC 4133 31 87.5 0 ......................C-....GC.. | TG,A [4106,4114] ========== ====== ====== ====== ================================ =================================== ================== 18 32 99.3 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : TAAAGCGATTCGCGGAGATATTGACAGTTACCCTCCCTTTATGATTTAGGAGAATGATATGATGGTTTTAGTGACGTATGATGTCAATATGAGTACAGCAGCAGGAAGGAGGAGATTGAGACAGGTAGCAAAGCTATGTGTTGATTATGGTCAGCGCGTGCAACATTCAGTTTTTGAATGTTCTGTAACGCCAGCTGAATTTGTTGATATTAAGCATAAGTTGACAACGATTATTGATTTGGAAATGGATAGCATCCGTTTCTATCTGCTGGGAAAACATTGGCAAAATCGTGTTGAAACTTTAGGAAAATCGGATAGTTACGATCCCGATTTAGGGGTATTACTATTATAAAATCAGTCGATGCGACTCTTAGTTACTCATAAAATGCTGGGAGTCTCGCGCAAAAATATGGTAAAATAATAGAGAAATGACTACATTTAGAGTGAATTCACTCAAGTGTACTTCTGTCATTTCTCTATAAACTGTGCGTTTTCGCACA # Right flank : AAATTAGATTTAACCCTAGACGGGACACAATATACAGAAGATTTCGGTGACATGTCGGTACCTTATTACAATGCTGTTCTGGATGCTTACCAAAATGTGATTGATATTGCTGAAGGGAATGATGCTTTCTTTGAGTCTGTCAACCAAGAGTTGAGGCATATTGAGCAAGCTAGTCAAGGAACTGGTTGGGGCTTTGAAGAAGGAGTCATGGACATTTTCTGTCAAATTGCTTATAAGTATGATGAAGAGGATTAATATTTGGAACAATTCATGGAAAAACTTCTGGTAGATTAGCCTGTATCAAGGCGAAATATCTCTACTATAGTTCACAAGTGCAGTTGCTATTACTAGAGTATCAAGATAATGGAGAGTGCGTTCTAATCAGCGAAAGTGATTTTCAAAAACACTTTATGTCTAGGCGCTCTCAGTTAACGACAGCTGGAAAATTAAGTATATACCGTTCCCTATTTAAAGGACGCGATGATGTGCATGCCAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //