Array 1 22184-23652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNG01000009.1 Pseudomonas aeruginosa strain AZPAE15040 AZPAE15040_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22184 28 100.0 32 ............................ CCCACGCCTCGGCGCCCTGCTCTCCTCATCTC 22244 28 100.0 32 ............................ TGCAAGTGAAGGTGCGCGCGTTGCTTGCGGAA 22304 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 22364 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 22424 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 22484 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 22544 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 22604 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 22664 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 22724 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22784 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 22844 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22904 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22964 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 23024 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 23084 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 23144 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 23204 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 23264 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 23324 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 23384 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 23444 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 23504 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 23564 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 23625 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38123-39707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNG01000010.1 Pseudomonas aeruginosa strain AZPAE15040 AZPAE15040_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38123 28 100.0 32 ............................ GCGGCACAGCGCCTGTTGCGTGAGCGCTCCGC 38183 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 38243 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 38303 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 38363 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 38423 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 38483 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 38543 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 38603 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38663 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38723 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38783 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38843 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38904 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38964 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39024 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 39084 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39144 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39204 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 39264 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 39324 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39380 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39440 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39500 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39560 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39620 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39680 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 105459-104770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNG01000004.1 Pseudomonas aeruginosa strain AZPAE15040 AZPAE15040_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105458 28 100.0 32 ............................ ATCCTCGCCGTCCAGGAACAGCGCGGTCAGGT 105398 28 100.0 32 ............................ TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 105338 28 100.0 32 ............................ ACGATGATCTATCAGACCTATCGTGGCTACGC 105278 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 105218 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 105157 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 105097 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 105037 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 104977 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 104917 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 104857 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 104797 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //