Array 1 7137-4999 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXW01000063.1 Rhodanobacter thiooxydans LCS2 contig063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 7136 31 100.0 35 ............................... GCCACTTCCAGCGTCGCCTCATCGGTCTCGCCATC 7070 31 100.0 37 ............................... CCGACCCATGCGGCACAGCCATACACCGAAATCATGG 7002 31 100.0 34 ............................... GCCACCGATTGCGCGTGCCGCCAGGCGGTCGAGG 6937 31 100.0 35 ............................... ATAGGTAGCGGCGATGTTCTGCACACCTTTCCACG 6871 31 100.0 34 ............................... GACTGCGATGCGGAAGAACTTGGACTTGGCCATG 6806 31 100.0 35 ............................... TCTTAACAAGCTATTAACAACCTCGCAGACCCCGC 6740 31 100.0 34 ............................... ATGGTACGAGACCCCTTGACTTTTGATGGTACGA 6675 31 100.0 35 ............................... GCTTCCTGCAGGGCGCAGGCCAGTTCGCTGACGAG 6609 31 100.0 34 ............................... GATGAAGTCTCGACGGTAGTGGCCGACCAAGCAC 6544 31 100.0 35 ............................... CAGCACGGCAAGCGTGAGTTGCGGCGGCTACCCCG 6478 31 100.0 36 ............................... GGCGCGGGCCTGCGCGACGTGGTGAGCCCAGCTGTG 6411 31 100.0 34 ............................... TCGTAGTCCCACTTTTCGCCGACGTTCACGGCGC 6346 31 100.0 35 ............................... TCCAACGGCAAAAGTCCTTGAAGCGCATTCAGGAC 6280 31 100.0 34 ............................... TTTTCCTTCTCGACCAGGCCCATGTAGCGCACTT 6215 31 100.0 35 ............................... GGTCGGTGATCGTCGGGAAGTTCTTGCCGACGGCC 6149 31 100.0 36 ............................... CAGTGCATCGGCGGCATGAGCTTCTTCACCCATGCG 6082 31 100.0 34 ............................... ACCATCGGCTCGCACAAATCCAGCCAGTCACTCA 6017 31 100.0 34 ............................... GCCTTTGCCGGAGTAGATCCGGCAGATCGTTCCC 5952 31 100.0 35 ............................... TTCGCCCTCGTCGTCGCGATGGTCGCGGCTCCCGC 5886 31 100.0 34 ............................... TCGCTGAGCGTCAGGCTGGCCCAGCCGTCGTCGC 5821 31 100.0 35 ............................... GACTACACCTGGTTGCACGGCTGATGGCCAAGCAG 5755 31 100.0 34 ............................... GGTTCAGCGAGATGTACGCGTTGTAGAGGATCTT 5690 31 100.0 36 ............................... GGCGGTCTGCACGTTGCCTGCACTCACGGTCGGAAG 5623 31 100.0 36 ............................... TCGCCCATGGCCTTGACCATGGCGAGCAATGCTGCC 5556 31 100.0 35 ............................... GTCGTTCGCGGCGTGGCCGGCGACGATGGAAACGA 5490 31 100.0 35 ............................... GTGTCAGACATCACCGGAAAGGCATGGTGTGCGGC 5424 31 100.0 35 ............................... ACGTCGATGGTGCCAGCCGGCGCCACCGCGGCCGG 5358 31 100.0 35 ............................... AATGGTCAGTTGACCTTTGCCGAGCCGGATAAACA 5292 31 100.0 35 ............................... ACGCCCAGGCTCTTGGTTTTTACCCCGCCGTTCAG 5226 31 100.0 34 ............................... AACATCCCGCTGTGGCTGGCGCCGGTGCTTGAGA 5161 31 100.0 34 ............................... TCGTTGGAGTAGCACCAGTCGAGCAGCAGGTCAT 5096 31 100.0 36 ............................... GTGACCTGTGGAAGCGCAACCCGAAGATGAAGGTGG 5029 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 33 31 100.0 35 GTCGCGCCCTCACGGGCGCGCGGATTGAAAC # Left flank : ATTTCTTTGGAAATAGGCAGTCGGAGCCGAAGCCATGATGATCTTGGTCAGCTACGACGTCAGCACGATTTCGCCCGAGGGCGAGAAGCGGCTACGCAAGATTGCCAAGGCCTGTCGTGATCTTGGTCAGCGAGTTCAATACTCCGTGTTTGAAGTAGAGATCGAGCCCGCGCAGTGGGTAGTCCTGCGGCGGCGCCTTTGTGACCTAATCGATCCCAGCGTCGACAACCTCCGCTTCTATCATCTTGGCGCGAAGTGGCAAGGCAAGGTCGAGCACGTCGGAGCTAAGCCAGCGGTCGACTTCAAAGCGCCGTTAATCTACTGACGCGAACCTCAAGTGTCCGGCGAAACCTAGACAGGTTCGCGGGAAGCCAACACATTGTTTCTGCGGGCATTGGGCGGTTTCTGCTGGTTCTTGGCGCGGACCTTGAGTCGGCAGTACGCGAGTTCGCGCTAGAAACGGGCTGGGACGAACGGACACAACAACTTACACTCGGATG # Right flank : GATCAAGGGCATCGGCCGCCCGCAGGGGCTCGGTGGTCGCGCCCTCACGCCGTCCACCGCGATGTTGTTGTAGCGGTTGTTCATGCCGGCGGCGGAGATCGCGCCGGTGCCCTGGTCGGTCACGCTCACGCGCGGGTTCAGCCGCATCACGTCGTCGATCGAGCGATTGCCCTGCGGGGCAGCCTGCAGCTGGCGCTGCGAGATGTTGGTGGAGAGACCCTTGTTCTCGGAAGTGAAGGTCTGCACCAGCGTCGAGGCGCTCACCGTCACCGCGCCCAGCGTGCGTGCCGACGCGCTGCCGGCGCCCAGGGCCAGGTTGATCGCGGAGGGCTGGCCCAGCTGCAGGTAGATGTTGTCCTGCTCGGCCCCGCCTCGCCCGGCCTCGACGCGTTCGTTTCCGCTTTACCGCTGCGGGGCAGTTCCGGAGTTACACCGGGATTCCCTTTTAAGCCCGACCGATGTCGCATCTGGTCGGGCACCGACCGCCACAACATATCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26596-20209 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXW01000061.1 Rhodanobacter thiooxydans LCS2 contig061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 26595 36 100.0 36 .................................... AGGAGTCCACGTCATGTCCAACAATCAGCCCGCAAT 26523 36 100.0 37 .................................... GTACTGCGTGTCCAACTGCTTCTGCGAGTTGAACAGG 26450 36 100.0 37 .................................... TTCCAAAGGTCAGAACCCCATTGAACATCCTGCGTGG 26377 36 100.0 37 .................................... CAGTGTGTCGATGCGATCCTGTCCGGCCTTGTAAAAG 26304 36 100.0 35 .................................... CGGATAACCACCCGCTTATCGAGTGGCGCTACGGG 26233 36 100.0 38 .................................... GATAAACCGTCAAGCGTTCTATATCGAACTCGCAAAAG 26159 36 100.0 37 .................................... CAGGGCCATGATGATCAGGTCTCCACGATGCGCTGGG 26086 36 100.0 36 .................................... AAGGTGAGCCTTCTCCATGGCCAGTTCTCTTGAAAC 26014 36 100.0 37 .................................... GATTCGCGCTGGGCGCGGATCTCGGCGGCAGACTCTT 25941 36 100.0 36 .................................... CCGTACACAGAAATCATCGGAAGCGATCAGTACCTG 25869 36 100.0 36 .................................... TGAACCGGGGCCAAAGACTCACCCCGATGATCTGAC 25797 36 100.0 37 .................................... TTGACCGGCGCGCACTGGGCCTCAAGTGCCGCGACCG 25724 36 100.0 36 .................................... TCGTCGGCACGCTCGGCGCGCTCGGCGCGCAGGGCG 25652 36 100.0 36 .................................... GTCGATGAGCTCGATGCTAACTTCGATGATACCCAT 25580 36 100.0 36 .................................... CAGGTGCTGTACACCGCGCCCAGGTCGGCCACCTGG 25508 36 100.0 35 .................................... CTGCGCGAGATGCTGCCGGCGCTGAACGCCACCGC 25437 36 100.0 36 .................................... CTCACCCCTGGACGCGGAGTGTATGGAAACCCCGTA 25365 36 100.0 37 .................................... GCGGTAACCGTGCGTCGTCACGCGGTCCTTCTCCCAT 25292 36 100.0 36 .................................... TGCAACCAGTCCAACCCCTGCACCTCGTCGAAGTAA 25220 36 100.0 36 .................................... CAGCGATCACGCAACTTTCCAGTGCACCTCGGCGGC 25148 36 100.0 36 .................................... TTCGATCTCTGGAATGAGACCGTCCGCATACGCCAG 25076 36 100.0 37 .................................... GGCGCGCTGCCGGACGTGGGCAGCAAGGTGGTCTATG 25003 36 100.0 37 .................................... ATGGACGACGTGCGCGCCAAGCGCCTGCCGCGCTACG 24930 36 100.0 36 .................................... GAAGGACACTCCATGACCTTCTCGGTACAATCTTCG 24858 36 100.0 37 .................................... CAGTTGCCATACGCAGGAGGAACGTAGGCCGAAGCCG 24785 36 100.0 35 .................................... TCGATGTAGCCGCCGGCGATCGTCAGGCCGTCCAG 24714 36 100.0 36 .................................... GGGCTGTAGAGGATCGACCACGGCGAGCCCAACTTG 24642 36 100.0 35 .................................... TTCGCGTACCACGCGCGCTGGCCGGCGGTCAGGGT 24571 36 100.0 34 .................................... TACGCGGCAGCCTCGCCGGCGCCCCCGTCCGTGG 24501 36 100.0 37 .................................... GACGTGATCCTGGTCGACGACCTCACCCGCTTTGGCC 24428 36 100.0 36 .................................... GATGCCGATGGCGCTGGATACGGGTTCGGTCATGCG 24356 36 100.0 36 .................................... CGGCACTGGGAGGCCCCAAGACGGCCCTCTCGCTGA 24284 36 100.0 35 .................................... AACTTCCCCCGCAAAGCCCTCGCCAGCGCCCTGCG 24213 36 100.0 37 .................................... GTGGCTTCCAGCTGCAGCCCGGCGTTCACCGCAAAGC 24140 36 100.0 36 .................................... TTCTGGTAGGCCGCCAGCGACAGCAGGCCGCCACGT 24068 36 100.0 36 .................................... TGCTGGACACCGCCGGCGGCCAGCTCGTCTACGTGG 23996 36 100.0 36 .................................... GGCCTCCCGGAAGACGTTGCGAGATACATGGCGCCT 23924 36 100.0 35 .................................... AAGTCCGGCGATGTGGTCCGGCATGAGTTCGGGTC 23853 36 100.0 36 .................................... TGCGCCAGACGGTGGTGCCGCCCGCCTTGTACACCG 23781 36 100.0 35 .................................... CACCGGTGCGGTTCCGATGAGTTTCTATTGCACGG 23710 36 100.0 38 .................................... AGCGTAGACCGTGCCAGCGTCCGCCATGACCACCGTGG 23636 36 100.0 36 .................................... TTCAGCGCGGCGAGCGGATGCGGCTCATCCGCCGCA 23564 36 100.0 37 .................................... GAATACACACTGGCCGGCGTGTCCGTGCTGGCCTGAT 23491 36 100.0 36 .................................... CCGCCGACCGCTTTTGCTGTCGCGTTGTATGGGATC 23419 36 100.0 35 .................................... AGCAGGTCGGTGCTGCTGAGGGAATTGAGCGTGCC 23348 36 100.0 36 .................................... TGCGGGTTTCTCGGTGCGCTATGCGCCTGGGCGGCG 23276 36 100.0 36 .................................... TACGTGACCGAACTTGCGCGCCAGGCGGCGCTGGAG 23204 36 100.0 37 .................................... TGGCGCTTGCGGCAGTATCAGCGTGACCGGCTCCGTC 23131 36 100.0 36 .................................... GGCGTACAGCTTGTCGGCTGCCGCGCGGAGGCTCAC 23059 36 100.0 37 .................................... TTCACCATGGCGCTGTCGGCGCCGGACTGGTCGAGGG 22986 36 100.0 36 .................................... TTGCCTAAAGGGTTGCGACTACGCCGCCGAAGCGGC 22914 36 100.0 36 .................................... CTGCAGCTGGTCGATGCTTACCGGCCAGCGCACGCG 22842 36 100.0 36 .................................... GCGAGGCAATGCGCTCGCATCGGCGCGTGCTTGTGC 22770 36 100.0 35 .................................... TCGAACGCACCGCGCAGGGCGGTGACCTTCTGCTT 22699 36 100.0 36 .................................... CAGCCACGCGCCGAGCATGCCGGCCGTCTCGCAGAT 22627 36 100.0 36 .................................... AACTGCGGCGAACACCGCCACCGTCTGCCCGACCAT 22555 36 100.0 36 .................................... TTCGTCAACGATGTGACCGGCGAGCAAGGCGCGCGG 22483 36 100.0 37 .................................... AGGATCTAAGCCATGCGTATCATCGCGGCATTCCCCG 22410 36 100.0 35 .................................... GATACCGAGACCGACGTGGTGGAGGGTCACGAGAA 22339 36 100.0 37 .................................... TGCGGCTGCGCGCCGCGCATACGTGATGCCAGGGTTG 22266 36 100.0 36 .................................... AAAGGCGATGCGCTCATGCTTTTCACGAGACGTAAG 22194 36 100.0 37 .................................... TCGGTTTCGATGCGCACGGCCTCGGCTCGCGCCGCAT 22121 36 100.0 36 .................................... TGGGCCATCAGCAACTCAATGACGCCGTTGCCGGTG 22049 36 100.0 36 .................................... CGGAGTAAAAAGAGACTTCCTCCCCTTTCGGCCTCG 21977 36 100.0 35 .................................... TCCCCGAGCGCGGTGCTGGACGGCACGGTGAACGA 21906 36 100.0 37 .................................... TTCGCCGGTTGTTCGGCCGTGGGATACCGCCGCCGAG 21833 36 100.0 35 .................................... ATGGGGTATCCCGTGGAATGGGACTACTGCGCGCC 21762 36 100.0 37 .................................... CAGATTTCGCGGGCTGGTTCGTACTGGTCGCGCTGTT 21689 36 100.0 36 .................................... CGTTCTTCTTCTTGCGCTGTTTACCATTTTTGTCTC 21617 36 100.0 36 .................................... TAGATGCGGCCATCGGCCAGGCGCAAGCGCATGGCG 21545 36 100.0 37 .................................... TAGCGATAGCCGGTGGCGCGGCTCACGCCGAAGCGAG 21472 36 100.0 36 .................................... CGATACTCATGTGCCCGCTCCTCATGCGTGAATTTC 21400 36 100.0 37 .................................... CACAACCCCCGCACCGGCGAGCCGTGGCTACACGACG 21327 36 100.0 37 .................................... ACAGGATCGTAGTGCAGCGGAACATTAGACGAGGTGC 21254 36 100.0 36 .................................... GGCGTCGTGCGCCGCGCGGCGCCGTCCATCCCTACG 21182 36 100.0 36 .................................... TATCAGATCGACCACGTATCCACGACCTCGGCGCAG 21110 36 100.0 36 .................................... GACCAGGCCACCCGCGACAGCGCGGGCGCCTTCCTC 21038 36 100.0 36 .................................... ACCAGGTAGGCCACCGCCTGCTGCGCCTGCGGCTTG 20966 36 100.0 35 .................................... GACAGGATGCCCTTGGCGTACATGCTGGCGTTGCG 20895 36 100.0 37 .................................... GACGCGGTGCTGGCGGCCTCCTTCACGCCGCAGCGCG 20822 36 100.0 36 .................................... ATGGTGGCTACGGCGTCGTAGCGCTTGCCCAGCCGC 20750 36 100.0 36 .................................... GCCGGCGCGCTGTCCGCGATCAACCAGCAGATGCTG 20678 36 100.0 37 .................................... GCGCGGCTCAACGGCCTGGACGATCCGACCAAGCGCC 20605 36 100.0 36 .................................... ACCACGAACAGCCCCACCGACGTGCGCAGCAACGCG 20533 36 100.0 36 .................................... TCGAAGTCCTCCACGCTCTCATTGGCCGGGTCCCAA 20461 36 97.2 35 ......................C............. AGCGGCACCGAGCAGATCTTCATCGGCTTCCGCAG 20390 36 100.0 37 .................................... TCGATCGCCCAGAAGGGTTCTTCTTTCTCGATATGCT 20317 36 100.0 37 .................................... ATGTTCCGACGACTGCGGCCCTCTAACCGAAAATGCA 20244 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ====================================== ================== 89 36 99.9 36 GTGATCCGCAGCGAAGAGCTGCGGCCTCATTGAAGC # Left flank : TGGTGACCTACGACATCCGCGACGACAAGCGATGGCGGCGTGTATTCAAGACCATGAAAGGGTTCGGTGAATGGTTGCAGCTGTCGGTCTTCCAGTGCCGTCTGAGCCGGCGTCGGCACGCCGAAATGCTGCAGCTGCTCGACGGCATCATCCTGCGCCGCACCGATGCCCTGCTGGTCATCGACATCGGCCCTGCCGACAAGGTCAAGCCTCGCGTGGTCAGCCTGGGAGACAAGTTCGACCCCGTCGCCAGGGAGCCCATTATCGTTTGACCTTCAAACCTTCACCCTCGTCTTCTCTCGCCCCATCGCCACGAGCACTCCAGTGACACCGCGAAACCCGGCCACCGCTCGCACGGCAACGCTCTCTGACAATCAAGCAGTTACCCGCCCATGTTGCCATCCGGCATCACGCGCGCTAGCTTGGCATGCGAGCGTGGCAGATACCTCTCGCACGCAACCACCAAACAGTCAACCCGCACAACGACTTGCGGAAGGACT # Right flank : GCCAACGGTACGGAATCGCCGACGGCACGCAGCGGACCTCCGAGATTTTCACCAGCTGAAGGGCTCTATTCTGTGCCAGCTATATGGTTATGGCCGAACAGCTCTCCCGCACATGGGCGAACCGCTGTTCCAAGCCGAAGCGGCGTGTGTGCACCAGCCCGCGAGAAAAGCGCGACATAGCCACGCTTCCCGCATCTCTGCCTTGGTCGCAACTTACTTGACTGAGAAATCCTTGCTGGCGACCTGGTTGCCGTCCAGCGAGATGTCCACCTTGTAGTTGCCGGCCGGGAAACCGTCCGGTTTGCTGATCATGAAGGCGGTGGTCTCCGGGCCCATCGCATTGAGCGTCTTGCTGTCCTCGTGCACCACCTGGCCATCCTGATAGGTCCATTTCGCCGCCAGCGTCGCATTGCCGTTGCCGCTGGTGTCGACCGAGGCGTAGATGGTGTCCTTCGGTGCGAAGCTGGTGCCGCTGGCGAGGATCTTGTGGTTTGCGTCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCGCAGCGAAGAGCTGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //