Array 1 289157-287805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEO01000009.1 Enterobacter kobei strain ECC3402 ECC3402_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289156 28 100.0 33 ............................ CAGTAGAAATCATAGCGGGTCTGCCTGCTGAAC 289095 28 100.0 32 ............................ TCAGCAGCAGACACCAGATCTCTCTCCCATTT 289035 28 100.0 33 ............................ CTGCGTAGCCTGGTAATTAGTACGAAGAGCATT 288974 28 100.0 32 ............................ TGTTGTTGAATAAACGCAAATACATCTGCTTC 288914 28 100.0 32 ............................ AACCGAAAAAGAAGTTACAGCCGCGCAACGTC 288854 28 100.0 32 ............................ GGGTTATACCGTCACGCGGCCAACCGAAAAAG 288794 28 100.0 32 ............................ GCGAGAGACAACCTTGTCGTAATTAACAATGT 288734 28 100.0 32 ............................ AAAGACGTCCAAGTCAACTGGATCACCGTTAC 288674 28 100.0 32 ............................ CACAAGGAAGATGATTAATGCAAATCAAACAC 288614 28 100.0 32 ............................ TCAACCCCAAATGTTGAGCGGCGCACCCCAGC 288554 28 100.0 32 ............................ ATGGAGTCAAACCGCAGGCGCCAGGCTGAGAT 288494 28 100.0 32 ............................ AAAATCACCGAAGTGGCGATCACTTCCGTTCT 288434 28 100.0 32 ............................ CTCGAGCATTTCGATAACTTCGCGGCGCTTGT 288374 28 100.0 33 ............................ CTCTTTGACTGGCTGAATACTCATCATTGCGCT 288313 28 100.0 32 ............................ TTTTTTGACACCCTACGCAGATTGCGAAGAAC 288253 28 96.4 32 ........T................... CGCCCGAGGTGATATCAATATATTTGCTAAAG 288193 28 100.0 32 ............................ GAAGGCGGAACGCTCGTTCGCAAACATCTCAC 288133 28 100.0 32 ............................ GCAGGTCACTAATCTGGGCGATATGACGCAGA 288073 28 100.0 32 ............................ TGAAAACTTTTGTCAGTTAGACCGTTTATGGA 288013 28 100.0 32 ............................ TTGTAAGTCGCTCACTATCCAGCGCCGCGAAC 287953 28 100.0 32 ............................ CGCATCAATACGCGCGGCGATCTGCGTCATAT 287893 28 100.0 32 ............................ AGTGATGGGGGATATTACGGCAAAGCCGTAAT 287833 28 92.9 0 .........A.....C............ | C [287808] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGCTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGCTCATTAATTCCAGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGAATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCTGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCTGGGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATGAATGGAATGGGTGTTTTTTAAGCAGGGTGGTTTATAAGAAGAAGGGCGTTTGACCCTAATTTTTAGTGCGTTTGTAATGCATTGATTTTAAATGGATATTTTGAGAGGGTAAAAAAGAGGGTAAAAGATGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGGGGATATTATTTGA # Right flank : ATAGAAAATAAGGACTCCCCTCCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCAACAGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 299784-298974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEO01000009.1 Enterobacter kobei strain ECC3402 ECC3402_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 299783 28 100.0 32 ............................ TAAGTGAGCGAGAGTAGGCCAGTAGAAATCAT 299723 28 100.0 32 ............................ GGAGAGGAGCTTATCGTAATAACGCGGAGGAC 299663 28 100.0 32 ............................ ATAACCAACCTCGCAAATAGAATAGAGCGCAA 299603 28 100.0 32 ............................ GCTGTGAGTTTTGGTGTCACCTGGCACAGTTA 299543 28 100.0 32 ............................ GGCATCGGCCGCGCACACTTCAAATCGAAGAA 299483 28 100.0 32 ............................ TGCTGCGGTGCTGCTGCTAGCATGGCCACAAC 299423 28 100.0 33 ............................ GTGGAAGCGCGTGAAAAATTACGCTACAGACTT 299362 28 100.0 32 ............................ TCAGACCGAACAAAGAGACGCTGCGCACGTTT 299302 28 100.0 32 ............................ GACGTCATCACATACGCGGCCCACGTCACATC 299242 28 100.0 33 ............................ ACTTCGCGCAGGTGCCACGACTCCACGCCGATT 299181 28 100.0 32 ............................ ACCACTGCCCGCGACGTACACCCAGTGCGCCT 299121 28 100.0 32 ............................ AGTACGGGGCGAATATGTCAGAGTTCGCCCGC 299061 28 100.0 32 ............................ TCTACAGGACAAAACTGAATTACCAGCAGTCT 299001 28 75.0 0 .....................ACCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCTCAAACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGACAACGAAGCCGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGAGACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGCTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACCTGACGGGATTACTGCATGACATCACACATTCAATGGCGGCAGATGTGGTATCTCCTCATGATGCTGGAACGGGAAATTCTGTTATTTCTTGAGTGGAGTGCGCACCGCCAAGGGATGTCCCCTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCATTGATTTATAATGTTTGCTTTTACGTTGCAGAAAAAAGGGTTTAGCATGGTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCA # Right flank : AAACCAACCCACTATAATATTCACCAAACCTATTTAAAACCTTATACCATTCAATCTGCACTCTCTGCTTCCACAATAAATAAAAAACCTATTCACGCATAAATTATATTCCATTGAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTTCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGCACATTCAACACCTTGAAATCAAAGCCCTTGCCATGTCCGTAAACAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAAGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTAATGCTGGGAATGGGAACCTCTGTTACACAAATGGCAATGCGGGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //