Array 1 25015-24727 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPX01000002.1 Treponema endosymbiont of Eucomonympha sp. strain D2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 25014 36 100.0 26 .................................... CACCGTATGTTCTAAACCGGCTAATT 24952 36 100.0 26 .................................... GGCTCACTACCAGGAACATTACACTG 24890 36 100.0 28 .................................... CAACAAGATCGAAAAGTATCTTGTGCAG 24826 36 100.0 28 .................................... CCGCAAGGTATCCGAGTATGTTCGCCGC 24762 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 100.0 27 ATCTACAACAGTAGAAATTAATAGTAACGTCTAGAC # Left flank : CGGTTTCAACTTGAATCGCAGCATTTTTGATACTGAATACAGATTCGTCAATTCCTCAAATGCTGTCATTGCGCGCTCCTCATAAACGTATACCGTTTATTTAGTATCGGTTTTATTTTGAACAAAGACGAACCGCTTATGATAGCCGTCGATAAGCGTTTTAGCCGCTTTGCAGTCTTCGGCGCGCTTCTCGTCATGCGCCAGAATTTTTGCCGCGCTGAACGTGCCGTTCGTCTTTCCGACGGGGCATAGTCTCGCCCACAGCGTTTTAGGCACGGCGTATTGACTGGTAAACGTATTCATATAAACCCCGCAAGCGCATAATTATTTTGAATAGCGCCGAATATAGCATATTACTGAAAAAAACGGCAGGGCGCGCTTCGCCGCTCGCGGCGTACTGGTTGCAGGCGCCGCCTCCGCGCGGCTCGCAAGAGTCTGCGAGCTATGCATAAGCCTTGAACAGACCTGTTCAACTATTGCCGTAGCTTCGGCGACCTTGA # Right flank : TCTAACACCCGTTTTTGACGGCGTTTTGCGCCCGCGGCGCCGCGAAATCAGACGCTATCCGCCGCGGATTTTACCGATAACGCGCATTCTGTGCAAGCGCGCCGCGTTCGGCGCAGCGCAAAAAACAGTAAGACACGGGGTTTGCATTCGCCCGGCAACGGCAAACCTCCCGCCGCCCGCTCAAGCTGCCGCTCCGCTTATATGGCGCTCCTACGCGCGTCGGAGGCGCGGTTTTGCGCGACTCAGAGGCTCTTGCGTCTGCCTGCGCAACGCTTGAACAGACCTATTCCAACTCTGAACAGACCCCGTCAGTCTCGGGCGTTACCCTTACGGGGAACGCCCAATTTTGCCGCCGAATGCCGCAATTGATTCCCGCCCCCGTTTCCGCTACAGTGTCGGTATGAACCTTGAAGCGTTCGTGCTCGGCTCCGGCGGCATGATGCCCCTGCCCTACCGCTGCCTCACCTCGGTGCTGCTCCGTCGGGACGGCGACCTCTTCC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTAATAGTAACGTCTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2891-3242 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPX01000040.1 Treponema endosymbiont of Eucomonympha sp. strain D2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 2891 36 100.0 26 .................................... GTGTAATAATCGATGCCGCCGTCCCA 2953 36 100.0 27 .................................... TGCCAAGAATACTAGAAGCCATTCCTG 3016 36 100.0 28 .................................... CATTAGTCTTAGCATTCTGAATATCAGT 3080 36 100.0 28 .................................... AAGTGTTTACTCCATCAACACCATCTTA 3144 36 100.0 27 .................................... CACATTGCACGATAAATCGGCTTCCTT 3207 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 100.0 27 ATCTACAACAGTAGAAATTAATAGTAACGTCTAGAC # Left flank : TACCCGAAGTTCCGTGACGCATACGCGGGTATGCGCGGCAATAGTATTCTTCCTAACACGACATATAATATCTGATACATCTGCTCCATGCCTTGCGTCTACAACAGTAGAAATTAACAGTAACGTCTAGACAAACGTAGAGATATTCAGCAATGTTAATCTACAACAGTAGAAATTAATAGTAACGTCTAGACAATTATAATTACCTGCACCAGTATCCATCTACAACAGTAGAAATTAATAGTAACGTCTAGGTAGTGTGGACTGGAAGGTGGGCGTAAAGGAAAAACACCTGATATAAATAGCAAAAATGAAGAAAACAGTAAGTTTTGCGTAGCGTGTGGCGATGCCCCGCCAGTGTTTGAGGGCGTCGAAGACGATTTTAATGAAATATTCCGTAGCTTACTGTGGAATATTTCATTCATGCCTCCCGTTTTACCTCTCTCCTCCTTTTCAGTCCACACTACCTAGACGATACTCGTCATAACGACCAGTATAAC # Right flank : CTCTAACACCCGTTTTTGACGGCGTTTTGCGCCCGCGGTGCCGCGAAATCAGACGCTATCCGCCGCGGATTTTACCGATAACGCGCATTCTGTGCAAGAGCGCCGCGTTCGGCGCGGCGCAAAAAACAGTAAGACACGGGGTTTGCATTCGCCCGGTAAAGGCAACCACCACCGTCCGATCAAGCGTCTGCCCCCGCTCATACCCCCGCGTAGGCGAGGCGGAATTTCGAGTATGAGCGGCGTATACACGCTTCACTGCCTGTCCGGGCAGCAGTTCTTTTATCCGTTCCCGCGTCTCGCCGCTTATATCGTACCGGTGAATGCCTTCATTTCCTCTCATGCCTCCCGTTTTACCTCTCTCCTCCTCTTTAGCCTACGCTGCCTAGGATTGAACCCATATCTTGATATGGAATTGACCTTCGTTCTGTTCCGTGGTAAAATAAGTCGAATCGGAGGATTCGGACGTTCGACTTGCACTGAACGATCGGGGATTTTGAAAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTAATAGTAACGTCTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //