Array 1 576-386 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01000368.1 Cylindrospermopsis raciborskii CS-506_B scaffold440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 575 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 501 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 421 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGTCAACGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2532-4403 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01000059.1 Cylindrospermopsis raciborskii CS-506_B scaffold500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2532 36 100.0 35 .................................... ATTAATATTCTCCTAGATATGTTTTAATCGAACAA 2603 36 100.0 35 .................................... TCGGTCACGCCATAAAGAGTTTCCCAAAACTATGA 2674 36 100.0 41 .................................... GGGCTTTAAAAAAAAGTTATTTATCCATAGATTATAAATAA 2751 36 100.0 35 .................................... AATAACAAAACTACCAAAGGAATTAGTAGTAGAGA 2822 36 100.0 37 .................................... GTAGAGAATTTTAGGGCTTGGGTAGGGACATATTTTT 2895 36 100.0 38 .................................... AGATAGCCGGAATCTTATACCCTTGTGAATCACATTTT 2969 36 100.0 39 .................................... CCTATGGGTGAAGTGTGGGTTGCACAAAGTAATGCTCAA 3044 36 100.0 36 .................................... TTAGGATAGCGAGCTTCTATCACATTATACTGTGAA 3116 36 100.0 37 .................................... CTGACTGGTTAACAGAAACCAGTTTTTTGATCTGGTT 3189 36 100.0 38 .................................... GCCCTGGGACAAACAGGAGCTTCTTGTTCCAAGGGAAA 3263 36 100.0 39 .................................... GGTTGAATATCTTGAGTAGTACTTCTCTGAATTCAAACA 3338 36 100.0 35 .................................... GTGTACCTCCTTTCTCCGTTAGCCTACTGTTTAAC 3409 36 100.0 44 .................................... CCCCTTACTGCTTCCCTTTTACAGCCGCAATATAATTTTGAGAG 3489 36 100.0 36 .................................... TGGGGTTGGGTGTTCATTGTTGTGGGGGTAGTGTGG 3561 36 100.0 38 .................................... ACGTTGTTGGGTTCGCCCAAGCCTGGAAACTTCAGGGC 3635 36 100.0 35 .................................... TATCAAAGATAAGTTCTCTACAGCAGGGGCAATTA 3706 36 100.0 36 .................................... CAGTCAGAGGCGCGGGTTCCAGTAATTTTAATAAAA 3778 36 100.0 39 .................................... CAGCAGCTTTAGAAGCCTTAACGGCTGCTTTGGCATCTA 3853 36 100.0 34 .................................... CTTCAGGCACGTTTTTAATAACCACCAGCTTATT 3923 36 100.0 35 .................................... AGGAGTTAGCTACCGCTCTGCCTGCGATTAATTAA 3994 36 100.0 40 .................................... TTTGATGTGGGGGTTGTGGAGAATCTGAAAAGATTTACGT 4070 36 100.0 40 .................................... GAAATAACCGGGTAAAGGGAAATAACCGGGTAACCAGATA 4146 36 100.0 38 .................................... CTACCTTACTCGTCTGTAGAGCGATAAATTATTTCTGA 4220 36 100.0 35 .................................... GCTAGGAGCTGCATATTTCGTGGGGTTGGTGGGGT 4291 36 97.2 41 ...........A........................ AAGCCTTTACGACCCTCGGCAGTGTTAGACTCATGCAGCTT 4368 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================================ ================== 26 36 99.8 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTTTCTAAAAACCCAAGTCTAATGCCTTTAGTACAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACCACCCTGTTTCGATGGCATCGTTGTGTATAACTTCAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTTTTTGACGACCCGAAACTCGGAAGGTATCGCGACTGAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACCCAAAGGTACAGACTTAGCCACAGCCTCAGCTTCAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTTACTTTTCTGAGGAAACCAACCTTCTCATAGGTGGCTCCCTGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTGACAAACCTTAATGGGACGGAGCCCTTTACTAATGTGTCTTGACCTTCATAAGNNNGNNTNGGNCTTNCNNANNAAGGAATAGGTATTACGACCCTTTATCGCTTTCCTATCCCTTCCGCTATTAGAGAAA # Right flank : TTATCTAATGCTATGGGACTAAGAGGATTGCAGCGATATAGTCTTGACCTTGAAAAAGGCAATTCTTCAAGAGTTGCAATCATCGTCATAATATAGCAGGAGTAAGTGGGTCAGTATACTTGGGACCAAGTTGTCAATAAAAATACTATGACTGCGCTGATGGCTAGGACACCTTGAATCAAGTTTCCCACCAGCGTTCCCACAGTGATTCCAATACCAGCTTTCACCGCAGGCCATAATCTTCTTTGGTAAAGGAACTCACCCACAATTGCTCCTAATAGAGGTCCAAAGAGAATACCTAATAATGGTCCACCAAAAGGTAAAGCGGGTAATAGTCCAAAAAATCCCATCAGTAAACCCACAAATGCGCCAATTTGTCCCCACTTACTAGCACCCGCTTGTTTCGCACCAATATAACCAGCAAGGAAATCAACTCCTGTACTTAGAAGTAAAACAATGATTGTCACAATCAGAGGAATTTTAATAGCAGCAAAGGAGTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2233-436 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01000675.1 Cylindrospermopsis raciborskii CS-506_B scaffold76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2232 36 100.0 39 .................................... TTAATGCAGCTCGTAGCTGCTTCTCCTCCACCTTTAAGG 2157 36 100.0 35 .................................... TTCTATGGGTTGGGAAGATAGTGGTCAAGTATCTT 2086 36 100.0 36 .................................... TTAAAAGGAGAAAGGGAGTTTTTTATTTCCCTGTTT 2014 36 100.0 37 .................................... TATTTCCCATTTGATCCAGAAATATATTACTGTGCTT 1941 36 100.0 34 .................................... TTAAAAAATCCGTCAAACATTGTTATCAATCCAT 1871 36 100.0 36 .................................... TTTACAGATTGAAGCCAAGAAAGATTTGAGCAGACC 1799 36 100.0 41 .................................... TTTTAGTAATCGCGTGTTTTGGTTGCTCTCGGGTACTGAGA 1722 36 100.0 40 .................................... AGGAAAGGATTTACTGAATCTGGTAGGGAGTGTTGGGTAA 1646 36 100.0 36 .................................... TTTTGTTTTTCGGTTATGAGCTACAAAGAGTCAGAT 1574 36 100.0 41 .................................... ATATTTTGACAGTTGAGAGCGAGTCCAATTGCGTTCCTCTA 1497 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1423 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1349 36 100.0 39 .................................... ACCCGCAATATCCAAATCTATCAATATTGATTTTATGTG 1274 36 100.0 36 .................................... GGGACTACATCTTTGTATGTAGGCTCTAACACGAAA 1202 36 100.0 41 .................................... GGCACGAAGCCAAGACACTGCCTCCATTCGGCAGCGGTTAT 1125 36 100.0 35 .................................... GCCTCTAACCAGGCTTCAAAGATCCTGGTTACCAA 1054 36 100.0 39 .................................... CTCGTATGTATAATGATATCCAACAGATAGTGTATTCAT 979 36 100.0 34 .................................... TTAAAAGGGGAATAGGGGGGGTATAAGCGGGTTA 909 36 100.0 37 .................................... TTAATGTTAATGAAATAGTCGATCTTCGGCCATTCAT 836 36 100.0 38 .................................... TCTATATATTCTTTTCTTAAACAACATTTTCAAGAACT 762 36 100.0 39 .................................... ATTTAATAATCATACGGGTTACCGCTTAAACAAATAACG 687 36 100.0 35 .................................... TTAAATACAAGCCATCTGCCCTCGAACGGGGTTAT 616 36 97.2 37 ................A................... TGGGTCTACCGCCCGCACAAGCGGAGGGGGGGGTAGG 543 36 100.0 36 .................................... AAGTAAAATTTTTAAAGGTAAAGAACACTTTAGGGA 471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 25 36 99.9 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGG # Right flank : CTTTTTAAGCGTTCATTACTACTGTTATTTCCCTAGCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAACCCACTCCCACAGCCAATCCGCACCCCATCCATTAATCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACACAATTTTTTCTCGCTTAATCAGCTCATCTTCATTTTCAAGCGCGATTACCTCTGGGAAGTGGAATTAATAGAGCTGTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGATCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 68-1816 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01001009.1 Cylindrospermopsis raciborskii CS-506_B scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 68 36 100.0 44 .................................... CTTCAATACTATGCCTTCAGTACCTTCTCATTTACTCATCTCTG 148 36 100.0 36 .................................... TTGGAGGAGTGTGTAGACTCCTTCCGCCGGTTAAAA 220 36 100.0 41 .................................... GAATAGATACAAAGTATATAGGCTACGGTAGCCGCGCGGCT 297 36 100.0 33 .................................... ATTTTACTAACTCACGAGCTAGCCCTTGTTTTT 366 36 100.0 40 .................................... TTACATTTTTGGTAAATTACAAAACTGCTACAATTCTAAA 442 36 100.0 39 .................................... CTTTTAAAGCGTGGCAGAACGCAATAAAAACCAGTGGCG 517 36 100.0 34 .................................... CTTTTTTGCCCTTCCAAGACAAGACTCCGCTTCT 587 36 100.0 39 .................................... TAACTCCTCAAGAAGGATTACCTCTTGAGGTTGGAGAAA 662 36 100.0 39 .................................... ATAACTTGGGATCATTACTGGGATTAACGGGATAAGAAC 737 36 100.0 39 .................................... TTTTTGGCCTTTTCGGCCTCAAGGAGATTTTTATGAGAT 812 36 100.0 35 .................................... GACATAGAGTCAGCTAAAAAATATTCCTAGTTTAA 883 36 100.0 38 .................................... TTTTCTACCTAAATGGAGTAACTCCATTTATCTGTTCC 957 36 100.0 42 .................................... TCATCTCAGTAATCAAGGGTAGTGGGACAAGCGATTACTAAA 1035 36 100.0 50 .................................... GCTTAACGCCACCGCCTTGTGCCAGCCACCCACGTTACGGGTGACCACTA 1121 36 100.0 36 .................................... GTAAGAGGTGGTAGTTGGGCATCTACAATGGAAGAA 1193 36 100.0 37 .................................... CCCGCCCCAGTGAGGGTTTTTTGTTGTCTAAAAATAT 1266 36 100.0 39 .................................... GGATCTGGTTTAGGGTGAGTAGAGAGAGTAGGTTTAAAA 1341 36 100.0 38 .................................... TGGGCTTGCTCGATGGATTCTACTTGAAAAAGTGGAGC 1415 36 100.0 38 .................................... CCTCAGAACAAAACGCAACCGCGTTGAAAAACAAGAAA 1489 36 100.0 35 .................................... GCGGTTACTGTAACTGTAGGCTGCGCGGCTACGGT 1560 36 100.0 36 .................................... GCGCTCCCCTTTCATTAAACTCTTCAAACTATCCCT 1632 36 100.0 36 .................................... GATTTAAATGAATTTAAACGGATCTAAATCGATTTA 1704 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 1778 36 83.3 0 .......................CT..CGG.....A | A,T,C [1804,1810,1813] ========== ====== ====== ====== ==================================== ================================================== ================== 24 36 99.3 38 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : ATAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGGA # Right flank : GTGGTCAAACAGCTTGTTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCATAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACGTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 12529-10431 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01001016.1 Cylindrospermopsis raciborskii CS-506_B scaffold196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================ ================== 12528 36 100.0 37 .................................... GACCAACTCGCCAGAGTTGGGTTGCAGGGATTACGAT 12455 36 100.0 35 .................................... TTGTTAGTGCCGACCCACTTCCTGAAGAAGGAATT 12384 36 100.0 38 .................................... TAGAAAGCTCCTGGGGGTGTCCGCTGGTGCTACCAAAG 12310 36 100.0 64 .................................... ACAGATAGATNCNCNNNNNAGCGGGGACAGATAGATGCCCTAACCCATGGAAGTAAATCCCTGG 12210 36 100.0 34 .................................... TTATTTTTTGGAGATTGATTATGTATTTATCAGA 12140 36 100.0 36 .................................... AAGTAGCCGCGCAGCCTACAGTTACTATANATCAGN 12068 36 100.0 36 .................................... AAGTAGCCGCGCAGCCTACAGTTACTGTAGATGCTG 11996 36 100.0 39 .................................... ACCTGTCCAATGCTATCAATGGACAAGGAAAGAGGTACA 11921 36 100.0 38 .................................... TTTTTAGAAAATATTTTAAAATAGCTGGAAGCCCGTTG 11847 36 100.0 37 .................................... CGACTAACTGAAGATTCCATTTCGGAGAAGTTGCAAA 11774 36 100.0 36 .................................... AAAAAGAGCATTGATTCCAACAGCAGTGTTATTTCC 11702 36 100.0 36 .................................... TCCAGATAATGTATGGGACTATCCCTCATATACACG 11630 36 100.0 39 .................................... ATTTGTACGCAACAAGCTGTAAAGTCAATTTATTTTTTC 11555 36 100.0 35 .................................... TTATTATGGTGGTCCAGTGGATCATCAAATCATAG 11484 36 100.0 35 .................................... TTTAAATCAACTCCATTATTGTTATATGCTTCAGC 11413 36 100.0 39 .................................... TTTCGTTCTCCTATTCATTCAGGAGCTATCTTAAAGATT 11338 36 100.0 39 .................................... CTAAGTATCTAGGTAACACTAAATTAAGAGTTTCTGTAT 11263 36 100.0 40 .................................... AGTCGCCTACGGTAGAGCTGTGTCTACCGATTATTAGTCC 11187 36 100.0 37 .................................... GTATTAGATAGCAATGCCAATGGACAAATAGTAGAGG 11114 36 100.0 34 .................................... CAACCTTGATAATAGTTTAAAAAACAACTATTAT 11044 36 100.0 37 .................................... GCTTCATGTAAGCGTTTCCAGGTAGGTATGAGACTAG 10971 36 100.0 37 .................................... AAAGATATACCAAAAAAATATTTTGGAATTTCAGTGT 10898 36 100.0 37 .................................... CTCTTGCAAGAGATAATTTCTTAGGACTCTTCGGGAG 10825 36 100.0 35 .................................... TTATAAGGCTCTTGAGCTTGAGTATGAGGTGGATC 10754 36 100.0 29 .................................... ACTGTGGTGGCTGTGGGGGCTGTGGGGTG Deletion [10690] 10689 36 100.0 38 .................................... GTTTTAATCTTCTATGGTTGCGCAAGTTAAGCTAGTTC 10615 36 100.0 36 .................................... TAGGAAGTGTCCCTTGGAGTTTTTTGGGCATGCCTC 10543 36 100.0 41 .................................... CGGACTGTTTAGAATCAGTTGTTTTAACTGTCTCCATGTGT 10466 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================ ================== 29 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCTTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATTCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 125-2678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFF01000966.1 Cylindrospermopsis raciborskii CS-506_B scaffold359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 125 36 100.0 43 .................................... AAACCATATACTATTGTTTATTAAAGTTAATTAACCTAAGCAG 204 36 100.0 33 .................................... CCGGGGGCTTTGTCAATGGAGTTGTACGACTAC 273 36 100.0 37 .................................... ACGGTGAGTCCCCGGACGTACGAACTCTTGTTAACTC 346 36 100.0 34 .................................... AACCATATATGGACTCCTCCCGGAGTTTCCTCTA 416 36 100.0 36 .................................... AGTAGAGGGGGGGTAGAAAGAAGGTTCTAAGTCAAG 488 36 100.0 39 .................................... AGGGGGAGCCGCGCGGCTACCTTCTTAGGATTTAAAAAT 563 36 100.0 39 .................................... TACTCTTGTGCGCCCAGTTGAGCGCATAGGATCGCGGCT 638 36 100.0 46 .................................... CTGCTGAAGTCTATTAGAGTAGATGGTTACAAAAGTAACTAATTAC 720 36 100.0 37 .................................... TACCCCCTCTATAATAACTGACACTATGTAGTATTCT 793 36 100.0 39 .................................... TTTAAAAGGAGCGACAGGGTCAAACTTTAAGGTAGTAGT 868 36 100.0 35 .................................... TATTCTTTGAAAAATTATTTAGTTGGTATCCTCTC 939 36 100.0 41 .................................... AAGACTTTTCGTTAAACAAGAGGTTTATTGTAGGTAAATAT 1016 36 100.0 37 .................................... AAACCCCATCTAAGCAGGGGCTTCGATGGGGTTTTAT 1089 36 100.0 37 .................................... CATAAACTTTTACCAGTAAACTAACTCAACTATAACT 1162 36 100.0 41 .................................... TACCCACATGGGGTAGAAGTGTACCATTACGGGGTCGTTTC 1239 36 100.0 35 .................................... TATTTTCTTAAACAGTTACTCGTTTAAACTTTTTA 1310 36 100.0 40 .................................... TAATTTTCTAATGTTTTTCCTTCGTTTTGCCCCTATAATT 1386 36 100.0 36 .................................... TAGACTCACTTCCCGCTCAGAGTTTGATACTTGGAT 1458 36 100.0 39 .................................... TTTTTCGGCAATCTCTCCAGACCCCCGCAGCATGTTTTT 1533 36 100.0 36 .................................... AGATGACTGGCCCAGAATTGTGCCGTACTAACTGGT 1605 36 100.0 41 .................................... CTGGATTAGCTTTACTGGATGTCAAGCAATTTGACCTAACA 1682 36 100.0 38 .................................... GCTTTGTGAGTGCTGCTACACAATCTAAAAAGAATGAC 1756 36 100.0 34 .................................... TAACAGGGTTTGAAGAAGAAATCATCCTTTACAG 1826 36 100.0 35 .................................... CAAATGGTAGAGTCTCTTAGGGAAAAAGGTAGGAG 1897 36 100.0 38 .................................... CAATAAATTAGTTCGGTTAAGCCTTCGGGCTTAAGAAG 1971 36 100.0 38 .................................... GTAACAGCTATTGAAGAGACTATGGGTCTTCAATATAT 2045 36 100.0 42 .................................... ACTAGATCCACTGGTTTTGATAAATAGTCGAAGATCGACTAT 2123 36 100.0 37 .................................... GAATTATAATGTAGAGGAGGGAAATTGGGGGTTAGAG 2196 36 100.0 37 .................................... CGTGGATAACTACATCCTCTTCAAGAGTTAAACCTTG 2269 36 100.0 39 .................................... TCTGAAGAGTTTTAAGCTCCAATATGTTTTTTTGTGTTT 2344 36 100.0 39 .................................... AGGCTAAAACAATAAATCCAAAAATCTCTTTCTTTAACA 2419 36 100.0 41 .................................... CACAGAGAAATCCTGTGGTATAATCACAGAACGTTCTACCA 2496 36 100.0 37 .................................... TGATACACTTGATAAACGCTGATTTGACTATAAAAGA 2569 36 100.0 38 .................................... AGATCTCAACTCTCTCCTTAGCGATAACGATCTCCCCT 2643 36 88.9 0 ..............................A..GCT | ========== ====== ====== ====== ==================================== ============================================== ================== 35 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : GTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //