Array 1 233012-236163 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHYP01000001.1 Acinetobacter baumannii strain AB_235 NODE_1_length_348017_cov_40.8635, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 233012 30 93.3 30 .................A...........C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 233072 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 233132 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 233192 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 233252 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 233312 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 233372 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 233432 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 233492 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 233552 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 233612 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 233672 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 233732 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 233792 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 233852 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 233912 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 233972 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 234032 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 234092 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 234152 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 234212 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 234272 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 234332 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 234392 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 234452 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 234512 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 234572 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 234632 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 234692 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 234752 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 234812 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 234872 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 234932 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 234992 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 235052 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 235112 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 235173 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 235233 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 235293 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 235353 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 235413 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 235473 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 235533 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 235593 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 235654 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 235714 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 235774 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 235834 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 235894 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 235954 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 236014 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 236074 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 236134 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 53 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //