Array 1 1026990-1028360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015995.1 Escherichia coli strain S51 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1026990 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1027051 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1027112 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1027173 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1027234 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1027295 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1027356 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1027417 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1027478 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1027539 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1027600 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1027661 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1027722 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1027783 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1027844 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1027905 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1027966 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1028027 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1028088 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1028149 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1028210 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1028271 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1028332 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1043862-1044439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015995.1 Escherichia coli strain S51 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1043862 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 1043923 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 1043984 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 1044045 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 1044106 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 1044167 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 1044228 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1044289 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1044350 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 1044411 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //