Array 1 4492800-4487095 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024614.1 Shewanella algae strain TUM17382 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4492799 29 100.0 32 ............................. GGTGCCAGAACCACCGTATCACGCAATGCGAA 4492738 29 100.0 32 ............................. TTCCCTGCCACCATTCAAAGACGAGTGGAATA 4492677 29 100.0 32 ............................. GCTATCTTTAACGAATGTGTGACCACAAAACC 4492616 29 100.0 33 ............................. ACAACGACCCAGTGTCGCTTCAGTGTACTTAAC 4492554 29 100.0 32 ............................. CGGCGCTGGCCAGTGCCGACTATGCAGCTAAA 4492493 29 100.0 32 ............................. TTTAAACGTAAGATGTTTGGCGGTAACTTGTA 4492432 29 100.0 32 ............................. GTCTATCCGGGTGAACTGCTTGACACCAAAGA 4492371 29 100.0 32 ............................. GCCTATGAATTAGCTATGGCCAAGGCCGGGAT 4492310 29 100.0 32 ............................. GTCATCACCAGCATACACGCTGAGGTACAGTG 4492249 29 100.0 32 ............................. CATATGCGTACTGTGGGCTTTGACACACGTAC 4492188 29 100.0 32 ............................. AAATCCAACTGGCAATTGTCGCACACCCTGAG 4492127 29 100.0 32 ............................. GTCTAATTCAGGTCGGTGTTAAACACAAACTG 4492066 29 100.0 32 ............................. TATCTTTTTAGGCTTACGGTCAGCAATAACGA 4492005 29 100.0 32 ............................. GTGATGCGCTACTGGCAGTTGATGAGGTGCTG 4491944 29 96.6 32 ............................C TCGGCGGATAGCCATAAGGGGTAAGCTAGATC 4491883 29 100.0 32 ............................. GCAGGATCTGCAATCTGGCAATGACGATGTGA 4491822 29 100.0 32 ............................. CTGAACCGGGATCCCCATGTCGGTGGCTATAC 4491761 29 100.0 32 ............................. TTCAGGGCGTTTATCCATCTGCGAAGGTGGAT 4491700 29 100.0 32 ............................. TAGCTTGGAAAGAAGAAGATCAGTTTCGTTGA 4491639 29 100.0 32 ............................. CCGGTTATGCAGCTTATGCAGCGGTAAAAGAA 4491578 29 100.0 32 ............................. ACCATCACCAATCATGTCACCCAACTTTATCA 4491517 29 100.0 32 ............................. TTCTTAACACCACGTTGACGTTCAGGTTTAGC 4491456 29 100.0 32 ............................. CTCGAACTCTTTACCCGTTGGTGTTACTGAAC 4491395 29 100.0 32 ............................. GTACAGGGCTTTGTCCCTTCTCCCAGCGCCGA 4491334 29 100.0 33 ............................. GGACAATACGATGTTATTGAGCAGTTTGCTAAC 4491272 29 100.0 32 ............................. GTTGGGTTCCTCTAAGCACGGTTATCAATCGC 4491211 29 100.0 32 ............................. CGACTCATCGCTCGGTCAGTCTTGGTTCCCGC 4491150 29 100.0 32 ............................. GTACTTTTGACGCGGTTGGCCTATTAGCAGCT 4491089 29 100.0 32 ............................. TTATCACCGTACTTATTTTTGAGATAATCGAT 4491028 29 100.0 32 ............................. TACGGTGATAACCTTCTAAATGTGCATGTCCA 4490967 29 100.0 32 ............................. CAAATAAAACATATCACATAATTACGGGATAA 4490906 29 100.0 33 ............................. TCTTACACCTACAAGACCAACCTGGATCTGGCC 4490844 29 100.0 32 ............................. CGAGATGATGCAAAAGTAATCTCCTCGCTATT 4490783 29 100.0 32 ............................. TATGATTACAAGTAAAGCTTGTATTTATCCTA 4490722 29 100.0 32 ............................. GATAACCGATGAGATTCAGCAAAGCATGGATC 4490661 29 100.0 32 ............................. TCATGGTACCGCAGATCACTGATACCAAGAGC 4490600 29 100.0 32 ............................. CTTTGCAGTTCCCGCGCAGCAAGCTTTTTGAT 4490539 29 100.0 32 ............................. CGCCCGACCCTGGAACAAACCGAACGGAATTA 4490478 29 100.0 32 ............................. CCTCTTGGGTTTATGCGTGCCGTGCGCTACAC 4490417 29 100.0 32 ............................. CTTTTCGGGACTTGGAAGGGCGTCACGTTTTG 4490356 29 100.0 32 ............................. CCATTTTACTGGCCTGCGTCGAACTTGCCTCA 4490295 29 100.0 32 ............................. CATGCCCCTTCTTAAACAGCTCAACCGCGCTA 4490234 29 100.0 32 ............................. GCGGCTGTACTATGGCGTTGCGCGAAGGGTTG 4490173 29 100.0 32 ............................. GTGGCAATGGTGCGCGTGTGGTGCCCCTGCTG 4490112 29 100.0 32 ............................. TCTTGCTAAGCTCGAATTTGCACGTGGTACTG 4490051 29 100.0 32 ............................. TCTAACTTATCGATTACCTCCGCCACAACATA 4489990 29 100.0 32 ............................. TTAACGTGGAACTATGACAAAGAACGTTACCG 4489929 29 100.0 32 ............................. CCAATGAGTACTTACTCAACGGACTGGGATTT 4489868 29 100.0 32 ............................. GGTCTGTCGTTATTGCTGACCGTAAGCCTAAA 4489807 29 100.0 32 ............................. TGATCTTCAACCTTAATAGCGTAAGTGAAGTA 4489746 29 100.0 32 ............................. CCATAGATGGTTAACACCACATCCTCATCAGC 4489685 29 100.0 32 ............................. ATGCGTGGCGAATATCTAAAAGCTGCGCTTGA 4489624 29 100.0 32 ............................. AAAAACTTGTAATGTTTTTTGATCAGGGATTA 4489563 29 100.0 32 ............................. ACATTTACATGGTCGATATCTTTGGCGGTGTA 4489502 29 100.0 32 ............................. ATTCGACTGGTGACCCAGTTCATTCTTGCGAG 4489441 29 100.0 32 ............................. GTAGTGATTTCGATTTGTATCAGAATATCATC 4489380 29 100.0 32 ............................. GTTGTATCCCAGTAGATTATCATACCGCCCGT 4489319 29 100.0 32 ............................. TGTTCATGGTGAGACAATTGGTCTCCCTACCG 4489258 29 100.0 32 ............................. TTCGGTATGGTTATCACTGGACACGAGATGGA 4489197 29 100.0 32 ............................. GTTATCGTGTGACTATATCTACGGATTGGGAA 4489136 29 100.0 32 ............................. CCGCTATCCACCATGCCAGCGCCCTGGCTGAA 4489075 29 100.0 32 ............................. ATGTTCGTCTGAAATCGCCGTGGTTAACGACA 4489014 29 100.0 32 ............................. ATACTTTGATCGTCGTCTTGTGTTGTGTCTTA 4488953 29 100.0 32 ............................. CCTCATTGGTGTCACCTTTTGCACTGAATGTA 4488892 29 100.0 32 ............................. CCAACAAAACGACCTCTGCCAAATTCTTCAAA 4488831 29 100.0 32 ............................. GTGGCACGATTGTGAAAGACTACTTTGCTGTT 4488770 29 100.0 32 ............................. AACGTTATCTCGGGTTACATGAAGAATGGGGA 4488709 29 100.0 32 ............................. GTATGCAAGATACACAGCTACGTCGTTTCATT 4488648 29 100.0 32 ............................. TATCTCGTCCAAGCGAGGAGTGATAGGTCATG 4488587 29 100.0 32 ............................. ACTTACGAGTCGTCTGTTGCTAACTGGCATCA 4488526 29 100.0 32 ............................. TCAACCAACGTGAGATGGCAACAGGTGGCATG 4488465 29 100.0 32 ............................. CATCGACGATAACACCGCCAGTAGACTTTCTT 4488404 29 100.0 32 ............................. CGAGACACAGAATAAAAACGATAAATGAACCC 4488343 29 100.0 32 ............................. CCTACAATAACAGCGCCGCTGCCAGCAGCTTG 4488282 29 100.0 32 ............................. GAACGCAGGCAAAGAGCCCTTCATGCTGTCAA 4488221 29 100.0 32 ............................. GATTTGAACAGAACTCTTTCGCGACACGAAGA 4488160 29 100.0 32 ............................. CGGTTAAATTCTCTTGGCAGGTCGCTAAATTG 4488099 29 100.0 32 ............................. AACAACTAAACTTATTGATGCTAGATTAGAAA 4488038 29 100.0 32 ............................. CGAAAAATGTGATGAACAAGGGGTTTGTCAGG 4487977 29 100.0 32 ............................. GTAATACTCCCTTCACAGACATCCGATTTATC 4487916 29 100.0 32 ............................. CCTGTGTATCTACTCCAAAGAGCACGAAGTAG 4487855 29 100.0 32 ............................. AACGCGTAGCCCGTACGATAGACGAACAACGT 4487794 29 100.0 32 ............................. ACGACGTACTCTACGTACAGTTACTTAGCGGC 4487733 29 100.0 32 ............................. TTATCGAAACGCTTAAACCGATGATCACCGGG 4487672 29 100.0 32 ............................. TTACCGTTATCGTCCATCATTGCCCCGACGTT 4487611 29 100.0 32 ............................. ATGGTGGGTTTACATGGGTGCAATGCGGAAGT 4487550 29 100.0 32 ............................. AAGTGGCGCAAGACCTACTTTTCAACCCCATC 4487489 29 100.0 32 ............................. CGGCATTAATGATAAAGGGGATGCGGTGATGG 4487428 29 100.0 32 ............................. TTGTGCACGTGCAGTAACTTATTGGCAATGTC 4487367 29 100.0 32 ............................. TATTACGGCCGTAACACTGCTGTAGGTGTGCT 4487306 29 100.0 32 ............................. TACTACAACGGGCAGGGCTGGATAGTCGGGAA 4487245 29 96.6 32 .A........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 4487184 29 93.1 32 .A.......A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 4487123 29 89.7 0 ...................A......GT. | ========== ====== ====== ====== ============================= ================================= ================== 94 29 99.7 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAACGGGGCCGAGTAGCTGATCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //