Array 1 36-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADEG01000095.1 Prevotella buccalis ATCC 35310 contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 36 38 100.0 27 ...................................... TACTTGTGAAGCACGAGCGCATTATCA 101 38 97.4 28 .T.................................... AGAAGTTTATGGATTTTTGAAGAGAGAA 167 38 100.0 28 ...................................... GTAGGAGATTTAATTGAAGAATGCAAGT 233 38 100.0 27 ...................................... ATAGCGGTAAATATTTCCAGCATCGGA 298 38 97.4 0 A..................................... | ========== ====== ====== ====== ====================================== ============================ ================== 5 38 99.0 28 TAGTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Left flank : AAGCAACACTGAACTGCCCAAAAGTGAACGGTACGT # Right flank : CCTTGTTGCCGTCCACAGAGCATCGCTCGCAGTTGTAGTTTGATGTAGAATCTTAATTGAACTTACGAGCGGGTCGATATTTTACACCTATATATAAGAAGGACATAAGATAGCAAAAGAACATGGTGCCTCATCCATTCATCACCGAGCAATGTTTCAGAGTGGCACATTAGCCCCCCACCCTCGGCACTTTGCTCATCATGCTTACCATCGTCATCGCACACAAAGATTTCTTCTACGACAGCTGGGTAAGTGCAGTTTGCCTAATCGTCATCATCGTCTTGTGCTGAATAGGTAAGGAAGGCAGAGCGGCGCAAGGGTGGATACGGCACATGCTCGCCTTTGAGTCCGTGCCATAGAACCTGATTGAACTCCACGTCGGGAACATTGTCTTCTTTCGTGAAATCGTAGGTCTCGCTCATGGCCTGGTATTTACTTGCCTTCACATTCAGTTCGTCCAACGCCACATTGTTGGGCAGATGCACAAAGGGCGTAACGTC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5477-5776 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADEG01000072.1 Prevotella buccalis ATCC 35310 contig00021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5477 36 97.2 30 ....................A............... TCGCAAGTTTCTCTATCAAATGACGCATAG 5543 36 97.2 30 ............................G....... AATAAACGCTGTCCCACCGCTGCACCGTGT 5609 36 97.2 30 ............................G....... GGAGACGGATCAAAATCTTAACGCCCACGA 5675 36 100.0 30 .................................... ATATCTTCTTTGCACAGCAACAAGTAGAAT 5741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Left flank : TCTCGTCAATAGTGCCTACTCATAGCACCAAATATGGATTGCCACTTAAAACAAAACTTTTAATGGGGCAGCAGGTGTTAATGTTTGAAGAAAATCCTGACGAAATACAAGTGGATAATACCAAAGACTTAGTTAAAAGACTCTACAAGGTGGTTGGCATTGAAAAAGATGGACGTATAAAATTTAAACATCATCAAGAGGCTCGTAAAGAAGGGTTGACTATCTACAGCACTCCTTATAAAAACAATGATGATTATGTTCCTATTTTCAGACAGAGCATAAAAAATATCAACATATTAGTAGATGGTATAGATTTTAATATCGACATTCTTGGTAAAGTAACGCTTAAAGAGTAAGTCGATATGTTAAAGCGAAGCGTTGTGTACCTATTCAGTTAGAATTTTTTTAGTATATTTGCAATAACGCTGATATATTCGAGCCACTTCTTGTATGAAAATATTTGTATAATGTACTTATATTCAATGTTTTAAATAGTACAA # Right flank : ATGACT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Alternate repeat : GTTGTGGTTTGATGTAGAATCAAGATATGAAGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 36193-36037 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADEG01000022.1 Prevotella buccalis ATCC 35310 contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 36192 24 100.0 42 ........................ GCATGAAACAGGCTGCGCCTTAGCAATTACAAACAAGCTTGA 36126 24 95.8 42 ............T........... GCATAAGATAGGCATCGCCTTAGCAAAGTAAGTAAACTTCCT 36060 24 95.8 0 ....T................... | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 97.2 42 TTGCATTCGGCTCGCACTATCTTT # Left flank : TCGACTGCACTCCTCACGACTGCGCTGCTCAAGTCCCAATCGGTTGATTACCTCGAGCATGGTATTGGTAATGAGAGTTTGTGTATCAGCCAACGTGCCGTCAAAATCCAGGATAATTGCTTTGATTTTCATTGAGTTATCTTTTTTATCGAGTTGCAAAGGTAACGAAAAAGAAACAAACAGACCTTGCCTACCTGTTACTTTTCGATGAATAATAAGAATAGCCCCTCCCCCATCCCCTCCCCGAAAGGGAGGGGAGTAGTTAGCTTGTTTGTTGTATTTTATTGATGGTACGCCTTTTCATCAGCTGCCATACCCACTGGATTCATCGTGTTGCGCGTTGCAAGATACGCTTTCTACGATGGTATGTGGAGATTTTCAGGGAGGTAACATCCCCGCATTCTTGTTTATTAAAATTAGTAAATTATGCCTGTGTTACAAAAGTTTAGGCTAATTTTGCATAAGATAGGCATCGTCTTAGCAAAGAAAGTAAACTTCCT # Right flank : CACATAAAATAGATAAACGACAGGAATAAAAAATGGGGTTAACACGTATCGCGGCTCACTTCTTTTCATCACGACAAAAGGAGATTGAGCGACACGCCAAACAAGCTGACTTAACGCAACAGCAGGTGCTGCAGCATCTTCTTGAACGGGCGAAGGACACGGAATATGGCCGAAATCATCTCTTTGGCAGCACCAAAACCTACGAAGATTTTGCCAAAAACGTACCTGTTAACACCTACGAAGAACTGAAAGGTGACATCGACCGCATGCGCCACGGCGAAGAAAACGTGCTTTGGCCGGGGCAAGTGAAATGGTATGCCAAGTCATCGGGAACAACCAACGACAAGAGTAAGTTTATTCCTGTTTCCAACGAGGGGCTCAACCGAATTCATTACCAAGGTGGAAAAGACACCGTGGCGCTTTACCTTCGCAACAATCCCGACAGTAGGATGTTCGACGGAAAGGGTCTGATATTGGGCGGAAGCCACTCTCCTAATTAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCATTCGGCTCGCACTATCTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //