Array 1 688638-689068 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027848.1 Staphylococcus muscae strain ATCC 49910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 688638 36 100.0 30 .................................... AAAAAAATTAAAAGATTACTAGACAGTGAT 688704 36 100.0 30 .................................... CATTAACAGTTTGTCGTGAATTAACACTTA 688770 36 100.0 29 .................................... TTTACGCCGCCACGCCCTTACGCTAAGTT 688835 36 100.0 30 .................................... AAAAAGAAAAAAACCGCTTGGGAAAGACGA 688901 36 100.0 30 .................................... TCACGCACTCTTGCCCCATATAGTTTTGCA 688967 36 100.0 30 .................................... TTCCATTTTTGGGGCGAAGCCGGGGGTGCA 689033 36 77.8 0 ...................CCG...G...A.T.GC. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GTATGATCAATGTTACAGATATTCCAGCATCATATCAAAAACAACTTCACACTGACAGCGGCGTTTATGTTGCAGAAGTTCAACGCAGTCAAAGCGGGTTGAAACGTGGTGATATCATCACTAAAATCGATGATCAGAAAGTTGAAAACGATTCTGATTTACGCTCGTATTTATACAAAAATAAACAACCGGGAGATTCTGTTAAATTTACAGTTATACGTAATGGACAATCCGAAAACGTAAATGTAACATTAGTTGAGTCTCAATAATTAGATAAAACCATTGAAATGTTATTTCTGGCATTTCAATGGTTTTTTTCAATAAACTAATGAAGATTGATGAAACCTTCTATACATATTTCACAAAGTTGATATATCATTTCTCATTAATATCGCTGCATAGTTATGTCTTTTAGAAAAAACTTCAATACTTCTATAATCGAAAAATAGTGAAAATAACTGCTGAATTATTAAAAAGGATAAGGTACAATAATGCTAGAG # Right flank : CGGAAATTGTTGCTTTTGAATACTTTATAATAGGTGTACCTGTCGTTTTTTTAAGTTCTTTCATTTTAAAATTCAATAATCTTTTCTAAATTCTTATTGTAGATACATATAAAAGTATAAGAATCAATAACTATCACGATTAATAATTTAAACTCTTCCCTATATTCTAGAGACTGTTACAATTCTCACTCCTACTTCTCATTTCTATATAACTAAAAAAGCCAGTGATGACTCAATTAGAATACATCACTGACTTTTTCGTTTTATTGATAATTTACCATGAAATATTTTTTCTTACCACGACGAACAATTGTGAATGCGTTGTCATATTTATCTGCTTCTGACAATTCATAAGCTAAATCCGTTTCGCGTTCACCATTAATATAAATCGCACCGTTTTGGACATCTTCACGTGCTTGACGCTTAGAAGATGAAATTTTTGTTTCAACAAGTGCTTCTACGATATTTGTCGTTTTATTTGATAATATAACTTGCGGTAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 757110-756945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027848.1 Staphylococcus muscae strain ATCC 49910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 757109 33 100.0 33 ................................. AACTCTTGATGTCAGTAGTCCTACATAGCCTTT 757043 33 100.0 33 ................................. AACACAAAAGGTTGATTTATTTGAGTATTCTCT 756977 33 75.8 0 .....................T.T..CC.TACG | ========== ====== ====== ====== ================================= ================================= ================== 3 33 91.9 34 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Left flank : GATTTATTTTTAACTACATGATGTGTTGTTTTGCCTTTTGCTGCTTTAAATCATTTGGATACACAAAAAGCGCTCATGTCTCTATCATTTTAAGTGACTAAACCAAAAATAAAGAGAAAACATGATGCGCCTACATATAATGATATATTAAAACTAATAAAAATAAAAGATGGAAATATTCAAGTTATGAAGGTGGAAGAAGATGTAGAAGTGCGTGGTCGGTTTTCCACGGTTGTTTATGGAACACTTTCTTATACATCAAAGGTTGAATGAAGTGTGATTGTATCAATGATGGACAAATACATAAATGTGGTAACACTGTTAAAATCTTAAGAATCGTATATCTCAATTTAGTGAAAGAACGCTTTAAGTGTCTACATTGTTTAAAAAATTTATGGCTCAAGCAAGAACCATCTATGTAGAATATTTAAAAGCTGATATATTATTGCTAGAAATAAAAGCTGAATTATTGAAAACATTAGGGTATAATGATGCTAGAG # Right flank : TTACAAAAGACATGGTAAATTGAAAACAGACGAATTTATATGGAAATCAATTGATAGGAATATTAACTATGTTTAAACGATAATATGGTAATAGCTTTAAAAAGCAAATTGATTAATTAGTAGGACTTTTTCAAAAAGAAAGCGAATATTCAAAAATATAAGTGAATTTATTTTAATATTAATGAGTTAGCTAAAACAATTGAATATTATAGTAAATCTCTCTCGAAAATCAAAATGAAAAGGTGATATGATGAGAAAAGAAATTGAAAAGTTATTAGAGTCTGATATATCGCATTATAAAATTTCAAAAGTAACAGGTGTAAACAGTAAGACAATTTCGGAATTACGAGCTGGGAAACGTAAGATTGGCAATATCACACTAGATACTGCTGAAAAACTATATAATTATCAAATACAGCTGGAAGATAAATGAATAAATCTCACTTATTAATTTGGGTGGGGTTAATTGTTGTTTAATTGATACCATTATGACGCGTAAA # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.19%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //