Array 1 728-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNIW01000020.1 Streptococcus agalactiae strain 228 NODE_20_length_727_cov_89.528571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 727 31 86.1 30 -----............................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 666 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 600 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 534 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 468 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 402 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 336 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 270 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 204 36 77.8 71 ............................NNNNNNNN NCTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGAC 97 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 31 31 86.1 0 ...............................----- | ========== ====== ====== ====== ==================================== ======================================================================= ================== 11 36 95.5 34 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 276082-275477 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNIW01000001.1 Streptococcus agalactiae strain 228 NODE_1_length_619791_cov_125.898915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276081 36 100.0 30 .................................... TACGGAAACGGTTATCATTCAGCAAGCACT 276015 36 100.0 30 .................................... TCATACGCACAATGAGGCTTCAAAAGCTTC 275949 36 100.0 30 .................................... ACGTACCCAGCGATATACTACGCAGAATGG 275883 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 275817 36 100.0 30 .................................... TATCGCAAATGAAACAGGCGCTTTTGCACT 275751 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 275685 36 86.1 5 ...............................NNNNN NNNCG Deletion [275645] 275644 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 275578 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 275512 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 27 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 79416-78523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNIW01000004.1 Streptococcus agalactiae strain 228 NODE_4_length_142723_cov_153.225527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 79415 32 100.0 34 ................................ TTATTTGGCTCTCTTTTGCTCTCTATCGCATTTT 79349 32 100.0 36 ................................ TCTTTCATAAGCAATCCTGCTATTTGACCATTGAAG 79281 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 79216 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 79151 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 79086 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 79019 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 78953 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 78887 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 78819 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 78753 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 78685 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 78618 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 78553 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.4 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGATT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //