Array 1 4147211-4146102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQY010000001.1 Enterobacter kobei strain MGH240 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4147210 28 100.0 32 ............................ ACAATGTTTGCCAATACAAACAAAGTCGGCCA 4147150 28 100.0 32 ............................ GTCCAGATGGCTTAAAACCAGTCGTTTTCTGG 4147090 28 100.0 32 ............................ GTCGCGGTTTGGCAGCGCATCGCAGATATAGA 4147030 28 100.0 32 ............................ TCCTCGAGCTTCTAATTCAAGAGTGGTATGTT 4146970 28 100.0 32 ............................ AATGGCGAGCCCAGCAACTTCCGACGCTTCCA 4146910 28 100.0 32 ............................ AACGCAGCTCTGCGCGCTCAAGTCCATCGCGG 4146850 28 100.0 32 ............................ ACGAACTGCGCCCGGATCTGCACCCGACACCA 4146790 28 100.0 32 ............................ GCTGCTCTCCATGTCTTTTGCGCGCCGCATGA 4146730 28 100.0 32 ............................ ATTATGGCGAGAAAATCTCTGAATATTCGGTA 4146670 28 100.0 32 ............................ AGCGACCGTAGAGATTGAGGGAAACCCTCCCG 4146610 28 96.4 32 ..G......................... CTGGCGATTAGCTGATATAGATAAATTCAACT 4146550 28 96.4 32 ..G......................... ATAATTATGCAGTAACCCCCTTAGTGCGCATA 4146490 28 96.4 32 ..G......................... CGCTGAACTTCGCGTTCTGTTTTCACCAGTCC 4146430 28 96.4 32 ..G......................... AAGCGGATTTTGAGGCTACCGGAAAAATCTAT 4146370 28 96.4 32 ..G......................... GCCGCCGCACCGATATTACGAACAGCATGGAA 4146310 28 96.4 32 ..G......................... TATCGTGCTGACTTTGAGGATTTGCCGACCAT 4146250 28 96.4 32 ..G......................... ATCATCCCGGGTCAGCTCGTCACCAGCCGGTA 4146190 28 96.4 32 ..G......................... TTAAATGCGCAGAAGTCACCGAAGTTGTTCAG 4146130 28 89.3 0 C.C............C............ | C [4146105] ========== ====== ====== ====== ============================ ================================ ================== 19 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAACGGGCCACGCGTTCGCTTTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGCCGGGCCACGTTACGTTCATTAATTCCGGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGGATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCAGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCTAGGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATGAATGGAATGGGTGTTTTTTATGCAGGGGGTATAAGAAGAAGGGTGTTCGACCCTAATTTTTAGTGCGTTTGTAAGGCATTGATATTAAATGGGTATTTTGAGGGGGTAAAAAAGAGGGTAAACGAAGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGGGGGGATATTATTTGA # Right flank : ATAGAAAATAAGGTCTCCCCCTCCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCAGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCGACTGCGCCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4157208-4156698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQY010000001.1 Enterobacter kobei strain MGH240 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4157207 28 100.0 32 ............................ CTATATGCTGCGCCGCCTCCGCTACGCTCAAA 4157147 28 100.0 32 ............................ CGCCACGGTAACGGGAAGTTGCGCGCAGCGGC 4157087 28 100.0 33 ............................ GAACTGGCGGGCGTGCCGCCGTCGTCTCTGAAA 4157026 28 100.0 33 ............................ GCGAAGTACCGTGCTCTGGTGCGTGCTGATTGT 4156965 28 100.0 32 ............................ TCAGTCCATTCTCCGCTACGGATTGCGTCACG 4156905 28 100.0 32 ............................ AGAACTCGTCCCAGATGTACTGGCAGAGCTGG 4156845 28 100.0 32 ............................ ATAACGATGGTTGTACGGGATACCATCGATGG 4156785 28 100.0 32 ............................ ATCGAAAGGAAACATCGACAACTGAGCGAAGT 4156725 28 71.4 0 ...................A.ACCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACTCCCGCAGACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGAGAACGAAGCGGAAGAACCGCGACAAAAAGAGTGGCTGCTCGAAGATACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTACTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACCTGACGGGATTACTGCATGACTTCACGCATTCAATGGCGGCAGATGTGGTATCTCCTCATGATGCCGGAACGGGAAATTCTGTTATTTCTTGAGTGGAGTGCGCACCGCCAGGGGCTGTCCCTTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCGTTGATTTATAATGTTTTTTTGCGTTGCAGAAAAAAGGGTTTTGCCTGTTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCT # Right flank : AAACCAACCCACTGTAATATTCACCAAACCTATTTAAAACCTTATACCATCCAATCTGCACTCTCTATTTTCACAATAGATAAAAAACCTATTCACGCATAAATTATATTCCAGCAAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTCCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGTGCATTCAACACCTTGAAATAAAAGCCCTTGCCATGTCCGTAAAAAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAGGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTAATGCTGGGAATGGGAACCTCCGTTACACAAATGGCAATGCGGGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4172507-4172239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQY010000001.1 Enterobacter kobei strain MGH240 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4172506 28 100.0 32 ............................ CACTCGCGAGAATGAGCAAGGCGGCAGTCTAT 4172446 28 100.0 32 ............................ GAACCACGGATGGATAAGCTCGCCCGGGCCGG 4172386 28 100.0 32 ............................ GGAATACTTTCAGGATTCGAGCCGGGGATCCT 4172326 28 100.0 32 ............................ GTCTTTTGCCCGCATATGCGCGTTTTTATAAT 4172266 28 78.6 0 ...............C.....AACC.T. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCACAAGTTATTCGGCGGCGTGGGCTTTATCAGCGGCATGCTGGTGGAAAAAGGGTTGCCGGGGTTTATCGCTTATGGCGTGTTGATTGGCGAAGTGGTGGCACCGATGTTGATTATTGTCGGCCTCTTTACGCGACCGGCCGCGCTGATGCTGGCGTTTACGATGATTGTGGCATGGCTGATGGTAGGAATGGGTGAAACGTTCGCCCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATTGGCTCGCTGGCGGTGGCATTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAGCACCGGCGTGGCGTTGAGGTTTGGGCTCTGGTATGAAGGAAAGGGTCTATGGACCCTTTTTTATTGGCTGTTTGTAACTTATTGATTTTATTGTGCTGAAATGTATGTGAAGAAAAAAGGGATCGAGACGATTTTTTAGGTTATTTCTTTATCTGACAAAGTGATAGGTGTAGATTGTTCCA # Right flank : TGTAGTTCGGCACAAACAATGTGCCGCCTGATTATAAGCCCGGTGGCGCTAGCGCTTACCGAGCCTACGACGATCCAGCCCCTACAAGGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAACGGGGGCACCGCGTCAGATTATGCGAGGACCAGATCCCCCTGCGGATGGCATGAGCACGCCAGCACGTAACCTTCGGCAATTTCCGCGTCGGAGAGCGTCATGGTACTGGTGACAGTGTACTCACCTGAAACCACTTTCGTCTTACAGCAACCGCATACGCCCGCACGGCAGGCGGCCACTACCGGTACCTTATTGCTTTCGAGTGCCTCCAGCAAAGTCGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGTAGCTTAGTAAACTGAATCCCGCTGGTTGCCGCCTCTGCTACCGGCGTGAAGAATTGCTCCTTGAAGAAGCGGGTCACGCCAAGCGCCTTCACTTCTTTCTCGACGATATCCATGTAAGGCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //