Array 1 3038198-3033288 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024310.1 Mycobacterium heckeshornense strain JMUB5695 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3038197 36 100.0 37 .................................... TTGCGGTATTCGCGCACCAACAGCACTTGGCGGCCGG 3038124 36 100.0 38 .................................... TGTCTGGGCCAGGGTCGCCCGCAAGCTCAGAGTGGCGC 3038050 36 100.0 37 .................................... CTTGATATAGGCGCCGACGGTGAATCCGGCGTCGCAG 3037977 36 100.0 39 .................................... CACCTCACCCTCGTCACCGTGCAGCAAGTATGCCTGCCC 3037902 36 100.0 36 .................................... CTTGCCAGTAGCTGGAACCGCAGCTTTGACATCCTG 3037830 36 100.0 37 .................................... TTGCTTCACGCTGCGGTTCAGGCCCGCAAGCAGGGAT 3037757 36 100.0 38 .................................... AACCCAGGATTGCAGATGCATACGTGTGAGTGATGAGA 3037683 36 100.0 35 .................................... CGCTCGGCTGCACGGCGACACCGCGATAGAAGTAG 3037612 36 100.0 36 .................................... ACCACAAAAGCCGTCCCAGTGGCCATGTCAGCCGGC 3037540 36 100.0 34 .................................... ACCGTGTACGGACCGCCGCTGTTCCCGGTTACGG 3037470 36 100.0 37 .................................... GTGTTCTCCTCGCTGAACGGCGTGAAATCCCGCCCGG 3037397 36 100.0 37 .................................... CCGCTGAAACTGATGTCCACGACAACGTATGCTCCGG 3037324 36 100.0 37 .................................... AATCTTGTGTTTTTTGATAGCGGTGAGCTGACCGCCC 3037251 36 100.0 37 .................................... CCTGTTCCCTGTTCCCTGTTCCAGCGCCGATTTTGCG 3037178 36 100.0 36 .................................... GAAAACCTTCGGGCCGCGAACAACGACCTGATCCGG 3037106 36 100.0 38 .................................... CATTCGCTAGCCCGCTGGCGATCGCGTCTCGCAGCGCG 3037032 36 100.0 38 .................................... ACGATCGTGACTTGGGCACTGTTGGGGCGATCACGGCG 3036958 36 100.0 35 .................................... TGAGAAAACGGTATGCCCACTACAGCTCTCGCCCG 3036887 36 100.0 35 .................................... GATCCCTGGGATGGTGGTCACTAGCGACCCCTTAG 3036816 36 100.0 36 .................................... CGGTGCCCTGACGGTGGCCAGCTTTATCCGTTCCAG 3036744 36 100.0 36 .................................... CGGTGCCCTGACGGTGGCCAGCTTTATCCGTTCCAG 3036672 36 100.0 37 .................................... CAAGTCGCCAGCTGTCTCCGCGTCCTCAACGTGCTGC 3036599 36 100.0 37 .................................... AGGTCCGCGTCTTGCAGACACGCGCCTTGCAGATCCG 3036526 36 100.0 38 .................................... ATTAGGAGTGCGAACTCCTCGGCGGTGCCCTTGCTCCA 3036452 36 100.0 35 .................................... ATTGAATGCCAATTGAGTGGCGGCAGCGGGATCAC 3036381 36 100.0 37 .................................... CCGTTTGCGGTTCGGTCGATTGCACCCGCACGAACAG 3036308 36 100.0 37 .................................... AGGTCCGCGTCTTGCAGACACGCGCCTTGCAGATCCG 3036235 36 100.0 38 .................................... ATTAGGAGTGCGAACTCCTCGGCGGTGCCCTTGCTCCA 3036161 36 100.0 37 .................................... GAGCTGGGCCGCGGTGTCGGCGACCGGACCGGAGAAC 3036088 36 100.0 37 .................................... CTGCGCCAGGTGGCGGGACTGGTGCCGCCGTAACGGC 3036015 36 100.0 40 .................................... GTCCGCTATCGTCTCTTTCAGCGCGCCAAGCTCGTCGCGC 3035939 36 100.0 36 .................................... ACGCCAGAGCTGTTGCAAGCGGCACGCTCCGGTGAG 3035867 36 100.0 36 .................................... GACCGCGCCGCGAAGGCCGTCGGGGACCGACTGCTC 3035795 36 100.0 36 .................................... AGGTCTTCTCCCGCCCTTCCTGCCCGCAATGCTTCG 3035723 36 100.0 37 .................................... AACAGTCACAAGGCACTCCCCTCGTCACGAAACACCC 3035650 36 100.0 36 .................................... AACAAGGCGCGGCTTTCTGTCATGGTGGCACGCCAA 3035578 36 100.0 38 .................................... ACCGAACCCACGCTGTTGCCGGTTGACGTGCCGCCGTT 3035504 36 100.0 36 .................................... AAGTCGACCACCCGGGCCTCGACCACCAAGGCGGAG 3035432 36 100.0 37 .................................... GAGCACAGTGACGGTCACCGATTGCTCGCCGTTGGGA 3035359 36 100.0 37 .................................... ATGTGCGCGCATCATGCACCTCCTCGACTTGCATCAC 3035286 36 100.0 36 .................................... TACTGGCGCTTTTAACCCGTTGCAGAACATCCCTAC 3035214 36 100.0 37 .................................... AACATGTCCGATTTCGCGTTCGTCGTGGCGAGGGCCG 3035141 36 100.0 36 .................................... GAGATTTCCGGCCTGCCAACACTGGATGAGCAGCAG 3035069 36 100.0 37 .................................... AAACAGGCTGCTCCCATTGAATTTTCCTTCCGAGGGT 3034996 36 100.0 36 .................................... GAGATTTCCGGCCTGCCAACACTGGATGAGCAGCAG 3034924 36 100.0 37 .................................... AAACAGGCTGCTCCCATTGAATTTTCCTTCCGAGGGT 3034851 36 100.0 36 .................................... AACTCCGGCTGGTTGGAATGCGACAGTAGCGGCGGG 3034779 36 100.0 38 .................................... ATCCCAACGCCCATGCCCGTGTGCGGCCAGTGCCGCGC 3034705 36 100.0 39 .................................... CTCATGTGCCACGATAACGATAGGTATCATCACTATCCT 3034630 36 100.0 36 .................................... ACGATCACCGAAGGCTGAGCTGGACGTGGCGCCGGC 3034558 36 100.0 36 .................................... AAGGACTCGGTGGTGGCTGGTGAGACCATCGTCCAG 3034486 36 100.0 37 .................................... GTGAAAGTCGAGATCAGCGGCGGCAACGCCGACTCGA 3034413 36 97.2 37 ................................T... ATCTTCGCGGTGATCGCCCCGACCGTGCCCAAGTCAC 3034340 36 100.0 38 .................................... CGACACAGCTCGCGTCGCAAGCGGGCGTTCATGCGCTG 3034266 36 100.0 36 .................................... AAGGACTCGGTGGTGGCTGGTGAGACCATCGTCCAG 3034194 36 100.0 37 .................................... GTGAAAGTCGAGATCAGCGGCGGCAACGCCGACTCGA 3034121 36 97.2 37 ................................T... ATCTTCGCGGTGATCGCCCCGACCGTGCCCAAGTCAC 3034048 36 100.0 38 .................................... CGACACAGCTCGCGTCGCAAGCGGGCGTTCATGCGCTG 3033974 36 100.0 35 .................................... AGCCACTATGTGATCGCCGACCGTGTTGGCATGAG 3033903 36 100.0 35 .................................... AGCCACTATGTGATCGCCGACCGTGTTGGCATGAG 3033832 36 100.0 37 .................................... CAGGGCGCGGGCAGCGCCGAGGGTTTCGATGAGCCGG 3033759 36 100.0 37 .................................... GTCTTTGCGCCGGGGAACGGCGATACGTCGCCGCTGA 3033686 36 100.0 37 .................................... CTCAACACCATCCCCGGGCCGGAGCGGGATCCGGCCG 3033613 36 100.0 35 .................................... CTGGATGCCGATCTGCGCGGCGATCCCAGCGCCGG 3033542 36 100.0 35 .................................... CAGTTCGGCAGCTATTGCCGATGGGTGCTACAGGG 3033471 36 100.0 37 .................................... CCGCTGGTCTGGATGACGAAACCGGGGAATGGGTCAA 3033398 36 100.0 39 .................................... CGCGTGGAGAAACAGGGTCAATTCGCTGAGGTCAGCGGT 3033323 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ======================================== ================== 68 36 99.9 37 ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Left flank : ATACGCCTATCATCACCAGGTAACCGATGAAGCGAATCCGCTACCTCGTAGCTTATGACATCCGCGACGACCGCCGCCTGCGTGAAGTCCATTCGATTGCCAAGAAATACGGATACGCGCTCCAATACTCTGTATTTATTTGTGATCTTGATGAAGGCGAGAAATATTCTATGTGCCTTGAACTGGGGAAGGCAGTGAACCACGCTGTGGACTCCTTGGTCTTTGTAAACCTCGGTGATCCGAGTTCTCGGGGAACTGAATGCTTCGAGTTTATAGGAGCTAGCGGACGGGTCGAGCTGCCGACGCGAGGCCCGACAATCATATAGGAATCCTGCGAGCGCTGAAATAGCTAGGTACTGCCCTATCAGGACTCGCGCCGAGGTCAGATATGGTATTGTGGCTGTTTGATAACTCAATATCTGAAACCTCTGCGCGCAGCTATGGCAGCGCTCGCAAACTTTCGGAGCGCTGCAGGTCAAAGGCCATAAATCTCTCCTGCT # Right flank : ACGCGGGAGAGTGAGTGTCTGTGCTTAACGGATTCGCCGTTCGCTGCGGCTAGGGGGAGGACTCTTACCCAAGAGTGGTGACTTACAAGCTTCGGCGGGTTCCGTGCTCCCTCAACATGCTCCCGCCATGTTCGGCATCACTGTTACTCTCCTGGTGTGCCAGCCGAATTCCCTGGTTTCGGCACGCGGTTGCGGCTGCTCGCCTCTGGCCCCAGCAGCTCGCCGTCGGCTGCGACAAGACGGGCCCGGAGCTGGCCGTTGAGGTCGCGTCGCCGCTTCCCGCAAGACCTTCGGGTGGGCATCGACGCTGTCGACCCTGGCAACCGCGGTCGGATCCGGGCAAGGACACGGGCTCCGCGGGCAAGCGTGTCGGGGCGCGGGGCGCTGCATATAGCCGGGTCACCGCGATGTTTACCGATAATGACAAGGGCAACGCCGAGCGGTTTCCGGCACCTAGAGCGCTGATGGATGCCGCGCCATTCGGGCTGGAGGGCTGGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCCAGGTGATTTCGCCTGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4120531-4119578 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024310.1 Mycobacterium heckeshornense strain JMUB5695 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 4120530 36 100.0 41 .................................... TTAGAAGTGGCTCCTAGGGATTGCAGAAACTTATCTGCGAT 4120453 36 100.0 41 .................................... TTCATGGTGTTGCGGTGGGGCGTCACTGATTACGCGCGCGA 4120376 36 100.0 43 .................................... TCATCCCACAGGACTGCCACCATCCCGGCTGGCGCGCGGTAGA 4120297 36 100.0 40 .................................... AATATGGGCTATTTGCCCAGGGCGAACTGGCGGGATCACT 4120221 36 100.0 42 .................................... CCTTGGACAGCAGGACGTCCTGGTCAATGCCATGCTTGTCGG 4120143 36 100.0 42 .................................... CCGCAACACTTTCGGCCAATTCGACCCGGCATTAACGTCCGG 4120065 36 100.0 42 .................................... AGGATGCGACCGTCGCGGTCGTCACGGATCAGATACAGCCGC 4119987 36 100.0 43 .................................... ATTTGATATGCAGTGACGTGGCAGGTGGCCACGTCTATGGCGT 4119908 36 100.0 37 .................................... TCATCGCACCAGGGCGGCACCCAGGCTCCCGAGCGGC 4119835 36 100.0 35 .................................... TCACGGTGTACGCCCGCCAGTTAGAGCGCCAGCAG 4119764 36 100.0 40 .................................... CATCGCAAAATATGCGTTCTAGCTGCCAGATGACAGTCAC 4119688 36 100.0 39 .................................... CATGTCCCGTCGGGGCGCGGTGGCCCACCCACTTGACCG 4119613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 100.0 40 GTCGGCATACCATTAACCCCGAGAGGGGACGAAAAC # Left flank : ACCTCGCTGACCTGCGGGGACTTACGCGCCCAGGCCGGCAGGATCGCCGAAGAGAACCGCTGCCGCTGCCCGGTGTCAGGATCGGTCCGCTTGTCGTTGACCCGCGGCGCACGCACCGCCACCGCACCGGCCGCGGTCAGCACCTCCCGCTCGTCGTGATAGCCGTTGCGCACCACCAACCGGTGCCCAGCTTCATCGACCAGATGGGCGTGCGCGTCGATGTAGGCGGCGACCTCGGCTTTCAACGCCGCAGCCAACATCTGCCGCGCGCCATCGCGGACAATCTCATCAAGCAACGATCGACCCACACCGCCGTTGTTGTCGTTGGCCGATTCGCTGTCGTGAACTACCGTGAGCATGGGCGTACCTTCCCAACCAGCGCGCCAACGCCGGTCTTGATCAGAACACTTCGGACTTTCAGATCATCCTCGGGAAGGTGCGCCCACTTACGCCGCCTCGCCGAGGCTCATCCACAGGTTCTGATCATTGCTCGCCTGGCT # Right flank : CGGCAACGGGCTTGACTTGGTTGGCGTGCAAGCTAAATGCTATGACAAAGACAGCACCATTAGTCGTCCAGCTATCCAAGAGTTTGTTGGAGTGCTCCAAGGCGCCCAGATCAATCGGGGTGTTTTCGTCACGACTGGTCGATTCTCCGACGGTGCCCGACAGTTTGCCAACAGTGTGAACATGCGCATTTGACTCATTGACGGCAAGGAGCTGACGAAACTGATGGTCCGTTACAACGTTGGTGTGCAGGTGCGTGAAACTTTCGACTTGAAGCAAATTGACGAGGAGATTTTCGAGAGCTAACAACAGATCGACGGCATCGGCAAGGACGGTCGTCTCCGGTGTTTCCGCGTACACGCGCTGTATAGCGGCTCCTGGGTCTGGCGAAGACTGACGTTGTGTCGGTGTCGCCAATTACCCTGGCGACCTGGGAGCTCTGGTCGTCGGCCGTCAGCCGGATGCACCGGTGGGCGGGTCTACCCCGAGCATGCTTGGCGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCATACCATTAACCCCGAGAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 3 4123744-4122061 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024310.1 Mycobacterium heckeshornense strain JMUB5695 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 4123743 36 100.0 38 .................................... TCGATAGCGGTGGTGTAGCCAGTCATTGGCGGGTGCCT 4123669 36 100.0 38 .................................... CACCCCCAAAGCTTGGCACATTCCCCGCTTTATCCCGT 4123595 36 100.0 34 .................................... CGGTTGGCCGCATCTGATCGAGATCGCGGCTGGT 4123525 36 100.0 43 .................................... CGTTTCGCCTCAGCGGGTATTTCCAGTTCGACAATGATTGCTG 4123446 36 100.0 38 .................................... ATACCATCCGTTCGCTACCGCGTGCATAGGCACGCCAT 4123372 36 100.0 36 .................................... TTGCAAGTGCGCGCCTTGTAGGCACACGCCTTGCAG 4123300 36 100.0 38 .................................... CCAGTGGCGATGGCGATGTAGGCGCACATCAGTGCCGA 4123226 36 100.0 39 .................................... GCTAAATTCCCGCCCACAGTTCCCTCTACCGCAACCTAG 4123151 36 100.0 40 .................................... ACGCATTCGACAACCTGCGCACGCTGTGCCGAAACTGCAA 4123075 36 100.0 40 .................................... ACGTTGTTCGCCGAGCTCGGCGACCGCGACAGCGCCACCG 4122999 36 100.0 33 .................................... TGTGCGTCTCGTACGGAGCGAAGTCTCCCTTGG 4122930 36 100.0 37 .................................... GTGGTACATACTGTGCTCGTCGGATGCGCCGACGCCG 4122857 36 100.0 41 .................................... CCGACTGGCTGGCGTGCAAGCACCTAGCCAGCGACTTCCAG 4122780 36 100.0 42 .................................... CTGACGAGCTCCAGGATCTCTGCCGCTTCGCGCATTCGCTGG 4122702 36 100.0 37 .................................... CGCTATGAGCGCGCCGGGCGCGAGCAGCAGTTGGCCG 4122629 36 100.0 39 .................................... TGCCTTTGGATCGGTGGGTTCTACCGGCGTAGGTGTCTG 4122554 36 100.0 58 .................................... TCGAGGTGCAAGGGGACGAAAACCTCACAGATCTTCGCCTTGAGATTCGCACTATCGG 4122460 36 100.0 36 .................................... CAGCTGGAACTGGTGGTCGCGGGCCTCGGCGTCTAG 4122388 36 100.0 40 .................................... GTTTGGCGTTGATGAACGCTGTCAGATCAGTCTGCTGCGA 4122312 36 100.0 36 .................................... ACATCAAGGTCGAACGGCGGCAGGTCAAGCGGCAAG 4122240 36 100.0 39 .................................... AGGAAATGCCGAGAACTATCACCATTAGCGGTGATACGG 4122165 36 100.0 33 .................................... CCTTGCCGTTGGTCAACAATTTACTATCGCCAA 4122096 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 23 36 100.0 39 GTCGGCATACCATTAACCCCGAGAGGGGACGAAAAC # Left flank : ACACTTTTCAGTACGCCCTCGATCTACAACTGCAAAGCCTGGTGAGGGCGATCGAGTCGCGAACACCGTCACTGCTTATCGAAATCGATATCAGCAGCGTACCGCAAGGGACGATGGATGCCGCAGGCAAGTCGTGAGGAGTATTTCAACCTGCCACTCGACGTGGATGAGTCCAGCGGTGCGTTGATGAAGGCTTTCGTTTTGGTCATCTACGACATCGCCGACAACAAGCGACGCACCTTCCTAGCCAAGACTCTGTCTGGTTTCGGATACCGTGTTCAGGAGTCGGCTTTCGAAGCGGTGTTGACAAAAGCTCAGCTCACAAGGCTCATGACCAGGGTCGAACGCTTCAGTAAGGAGGGCGACAACATTCGAATCTACAAGATCAGGGGTGACGCCGCAGTCACCTTCTACGGGGAGGGGCGGCTCATCAGTGCAGAGGATATCGAGTTTATATGACCAAGCTGGAGGTAGCGTATACTGTGCGATTTGTCAATAGA # Right flank : TGTGCGATGTGGTGGACACCGATTTGGCGGCCTGGCTGGAGGAATTGTCAATACCTGTGGATCGGTGAGTTTCAGGCGACCTCCGATCCGGCCGTTTCAGGCTCGGCCGTTGATGGTTCAGGCGTGATGTCGGTGGGCCGTTCCAGCAGTTTGCCTTTGTGGAAAACGGCGCCGGCACGGACGAGGGCGACCAGATGCGGGGCGTTGACCGCACGCCAACGGGCCTGTGCAGCGTCGATGAGCTTGTAGGCCATGGCAATCCCGGCAGCACGCGAACCGGGACCCTTGGTGACACGCTGCCGAAGCCGCACCGTGGCGAAGGTAGATTCGATGGGGTTAGTCGTCCTCAGGTGCACCCAATGCTCCGCGGGGTACTTGTAGAACTCCAGCAATACGTCGAGGTCCTCGGTGATCTTGGCGACCGCCTTGGGGTACTTCGCGCCGTAGTCGAGCTCGAAGGCCTTGACCGCAACCTGCGCCTTGTCGATATCCTCAAGCGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCATACCATTAACCCCGAGAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //