Array 1 5687530-5688960 **** Predicted by CRISPRDetect 2.4 *** >NC_009142.1 Saccharopolyspora erythraea NRRL 2338, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5687530 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5687603 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5687676 36 100.0 37 .................................... CAGGCGTTCGGCGGAGAGCAGGCCCGGGAGTTCGGGC 5687749 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5687822 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5687896 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5687968 36 100.0 41 .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 5688045 36 100.0 35 .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 5688116 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5688188 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5688261 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5688335 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5688407 36 100.0 41 .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 5688484 36 100.0 35 .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 5688555 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5688627 36 100.0 37 .................................... ATCGGGTGTGCGTGCTTGCTGATTGGTGCCGGTACGA 5688700 36 97.2 36 ..................C................. CCTACTACAACACCGGCAACGTCAGCTCGTTCTCGA 5688772 36 100.0 41 .................................... GTCGCGGGCGAAGTCGTGGCTCCGGTGAATCTCCATCTCAG 5688849 36 97.2 41 ...................C................ CCACATCGAGAGATCCCCTACTACAGCGTGTAGCCCGGCAG 5688926 35 88.9 0 ......T.................-..T.C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 98.9 38 CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Left flank : AAGGTCTGCCAAGAACACGGTGCCCGGACGCTGCTCAGCCTCCGCACATGGTCGACCACAATCCCGGAGACCAGGGAGGCTTTCACCGCCGTCGTCGAACAAGCCTGCCGCGAGTGGCGCAAGCACACGGAAACGACGGGGGCGCAACGACATCGACTCATCTTTCTCAGCGGCCCCATCCCAATCGCCGTCGCACTCGGCGCTCGATTCGCCCCCGAACGGGGCCGCTGGACCGCCTTCACCTTCGACCGAGACACGAGCCGGTACGTACCCTTCCCAACCCGGGATTGACCTGCAGCAGCCTCTACTCGGATGGCCCCACACGCGAGCGGCCCAGCGACGCCACCACCAGGCGGGGGCACTCGCGGCGAATCACCGCAGGTCAGAAGCGAGAGGCAGGCATGTAAGATCCACATCGGTGGACGCTAAGATCGACACCGAGCACCCGCTCGAAACGATCTTTGAAAAGCCAGGACACGGGCACCGAAAACAAGGAGCCC # Right flank : CTGCGCATAACCACGATGCGCCGTGATGAGCATCCAGTTGCCACCACGAGCGTTCCGGGCCGATCCTCCGCTTTCCGCAGCCGGGTGCTCCATACTTGCGTTCCTTACGATCACGCTGCCACGGGATCTTCAGGTACGTCGCTGTCTTGGCCTCTCATGTTGGCCTCTGCATCAGCCAATGGCTATTGCTGGCTTTCCAGCCGCCCGTCGCGGCTGCTCCGGTGAAAAGCTCACCGGAGGGGGTGGGTCTGATGTGGCCGCTTGCAATCCACTATCGAGTGAATCCCGAGATTCGGTGTGCGGGTGCATCATCCCTGGGTGTCACAGCCTGGCACATACCTACCTACAGGAGATGATCTCCCATGGATCCGCCATTGCCCATCGGCGCCCGCGCGCTCAGCGACTTCCGGTTTTGTCCGCGGCTGTTCCACTTGGAGCACGCGGAGGGCTACCGCTTCGACAGCGAGGAGATGCGCCTCGGACGTCACGTCCATGCCTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 5694052-5695153 **** Predicted by CRISPRDetect 2.4 *** >NC_009142.1 Saccharopolyspora erythraea NRRL 2338, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 5694052 36 100.0 34 .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 5694122 36 100.0 35 .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 5694193 36 100.0 35 .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 5694264 36 100.0 37 .................................... CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTCAG 5694337 36 100.0 51 .................................... ACGGAGTAGAACGGCACCCCGGGCACCCCGGGGTTGAAGTAGTACTCCGCC 5694424 36 100.0 39 .................................... ACCAAGCCAAGCTTGTCGCCGAGCACACCACGCACGAAG 5694499 36 100.0 59 .................................... TCCTGGGCCTGCTTGGTGAACCACAACGGCCTGCTCGGTGAACCACAACGGCAGCACAG 5694594 36 100.0 43 .................................... CAAGAACGCCTCGGAGATGATCCGCGAGTGCGGCTTGATCCGG 5694673 36 100.0 38 .................................... CTGCCACCAGTAGCGCAGCAGGGGGAACGCCAGCTCCA 5694747 36 100.0 37 .................................... TTTCCGAGGCGAAGGTTTCTGGTGTTCGCCATGTCGC 5694820 36 100.0 40 .................................... AACTCGGTGTCATAGAAGTACTTCATCGTTTGAGTTCTTG 5694896 36 100.0 37 .................................... TGTCCTGCGCCTCGTCCAACAGGATCACGTCGTACGG 5694969 36 100.0 42 .................................... CACGTGCCAGTGCGGGTCACCGATCGGCGCGTCGCCGACCGG 5695047 36 97.2 35 .........................G.......... CTCGGAAGGTTGGCCATGCGTGGTCCGGGCAGGGA 5695118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================== ================== 15 36 99.8 40 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CGGCGCCGCGCCGGAGACGCTCGGCGCGCACCACTACGACCTGCTCGGCATCGACGATCCGCGACTGCACAATGTCAACGTCCTCGACCAAGACGAGGCAGTATCAACCGAAGAACTAACGGAGGCCCAAACCCTCTGCGAGAAGCTGCATATCCCAACCGCATTCGCGGCACGCGTGGCGATCGGAATCCGCGGGCGAGGAACCTGACTCCACCCCGAACAGCGACTTCGCCCCCACGACACAGCCCGCGGCGACCGCAGCAGTCACAAAGGATCGCTGTAGTCACGGCAGTCACAACATGCAGCTCGGACCACCGGATCGTCCGCGAGCGGTCCGGCCACGACACCGCCAGGCAGAGGCGCTCGCAACGGGTTACCCCTGGTCAGAAGCGAGAAACAGGCATGTAAGATTGACATCGGCGACCGCCGAGATCGCTACCGAGCATCCACTCGAAACGATCTTTGAAAACGCAGGACACGAGCACCAACAACAGGGAGCC # Right flank : CACGTCCACGCCGAGGTAGTCGGTGCCGAGGCGATCGTCGGTGCTGTCACCGGCGCCAAGCTGTCAACGGCGGCCGAATGTGGACCCGGCTGCGGCGGCTGAAAATGGACCCACCCTGGTTGTTGATGTTTAGTCGTTGGTGTTGGTGGCCGCGGGCACGCGGCCGAGGTCTTGGCGGTCTTTGAGGCGGTAGCTGTCTCCTTTCAGTGAGATGACTTCGGCGTGGTGGACGAGGCGGTCGATCATGGCGGCGGCGACGACGTCGTCGCCGAAGACCTCGCCCCAGCGGCCGAAGGGTTTGTTGCTGGTGACGATCAGGCTGGCTCTCTCGTAGCGGGCGGAGACCAGCTGGAAGAACAGGTTCGCGGCTTCGGCTTCGAACGGGATGTAGCCGACCTCGTCGATGATCAGTAGCGGGATCCGGCCGAGTTTGACCAGTTCCTGCTGGAGTCGTCCGGCGTGGCTGGCCTCGGCGAGCCGGGCTACCCACCCGGCGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5697385-5697858 **** Predicted by CRISPRDetect 2.4 *** >NC_009142.1 Saccharopolyspora erythraea NRRL 2338, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5697385 36 72.2 38 .CCGTC.GC.ACA....................... ACCATGCCCGGGTGCGCATCCGCACGGCCGCCGACCTT 5697459 36 100.0 42 .................................... GCCTTCACCTTTGCCGGCATCCGGCCGGAGTTGTTCAGCCGG 5697537 36 100.0 35 .................................... CCAAAACCCTGCGTCGTGCATCAACCAGTACCCGG 5697608 36 94.4 37 .......A...........C................ ATCACGATGGCGGTAGAGCTGTCGGTGTAGTCGGCGA 5697681 36 94.4 35 ..............C........C............ AACCAGAGGGAGAGGGCTATGGGCAGCGGCCACAT 5697752 36 91.7 35 ....A.....G...C..................... TGGTCACGGAACTGGCCCGCACCGAACTCGCCGCA G [5697773] 5697824 35 75.0 0 A..GG.T..A.A..TG..........-......... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 89.7 37 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CCCGACACCATCACCAGCACCGGCGGCCGCCCCACCTGCCCGAACCCCAGCGGGATATCGACCGGCGGGAACCACAGGTCGCATTGGGCCAGCTCACCGGGCTGATACACCGTCCGCGACACCGGATCCGGCGGCAGGAACAACGGGCGCAACTCCCGCACCCGGTCCTTGAGCACCGTCAGGCCCCGCTGCCAGCCGATCCTCTCGGCGATCACCGGCACCGGCATCGTCGGCCACTCCGCCAGCAACGCCCGGATCTGCGGCTCCACCGCATCCACGACCGAGCCCTTCGACGGCCGCTGATACCGCGGCGGCCCCTCCGAAGCCAACGCCCGCCGCACCGTGTTCCGCCCGACACCCAGCTTCCGGACGATCGCCCGAATCGGCATGCCCTCACACCGATGCAACCGACGGATCTCTGCCCAGTCCTCCACGCTGATCACTCCCTACTTGTCAGGGAGTGGGTCCGATTTCGCCCGCCCACACCGGGTCAGGATTCA # Right flank : CGAGATAGTGTTTCCCAGCGGTACCGCGATCCGGCGCTGGTACGTCACCGTGCCCAGCGACGCTCCTCATTTCTCGCGGTAGCCGTCCGAGTTCAGCTATGGGTCGGCAGGAACAGGCCCATTCCAAGATATCTCTGTGATCCCAACAGAACCGGTCCTGTTGCTGGCTCGGCAAACGTGATTTTCGCGTGGGTGTACGGGCGGTTGTCTCGGCGGGGTAGTTGCGATCGGCCGAGGTCGGCGGCTCCGTGGACGAACGGGTTCCGGCTCGTAGTCACTTCGATCGGACTGGGGAGTCCACTTCGGATGCATGTGCGGGCGATCTCCGCCGCTTCCCTGCCCTTACCCGGGTAGCGATCCAGCACCATCGGCGTCACCGTCGTCCAGCTTCGGGACGGACCCGACAACCCAGCCGTGACGGGCTCGGCATCCTGGGGCCGCAGTCGCAGCCGTACACCCGGCAAGTCCAGATGAAGTGGTTTTCCCGTTGTCAGCGCCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //