Array 1 541152-541341 **** Predicted by CRISPRDetect 2.4 *** >NC_005835.1 Thermus thermophilus HB27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 541152 36 100.0 40 .................................... CTCTTTCAGGATCCACGCAAACTCCCTTCCTTGGGGCTTA 541228 36 100.0 42 .................................... GCCTCCACCATGGGGAGGAGGCCCTCCTCCCTCGCCACATAC 541306 36 88.9 0 ................................TCGT | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 96.3 42 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGACCCGGGCCCGCAGGAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGAGCTCCAGGCCCAGCGCCTGAAGGCCGCCCTCTTGGGGCGGGGGCGCTACACCCCTTTTTATCTCTGGCGGTAAAACGAGCCTTTGCTACACTTGTCAGCAAAATTACGATGCGACTGGCTTTCTTTGAGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCTTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATGCTCCCCCTAACCCGGACTTCCGGGTGGGGACCTTGAAAGCCAGTTTCTCCCTTGTGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTTGGGGGGTACC # Right flank : TAGGTGAAGGCCTGTACCTCTCGCGCTAGGAGGCTTCCACGCAGGTCCCGGTGCGCCTTCCCACCCACCTTCCGGGCCCTTTCCCGAAGGGGCGCTCCCAGAAAAGGGGCCCGGGTGGTTCGGTGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCCCTGGTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTTGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGGAAGTCCCGCAGGACCACCTTCAGGGCCT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1137119-1136637 **** Predicted by CRISPRDetect 2.4 *** >NC_005835.1 Thermus thermophilus HB27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1137118 36 100.0 35 .................................... CAAGGATGACGGTGCGAGTCAACCCGTCCACTTCC 1137047 36 100.0 35 .................................... GCCGATGAAGGCGGCCAGTACGCGGCTGTCGCTTA 1136976 36 100.0 47 .................................... TGGACTGCCTCTACGAGCTCCCTGAGTTTCAGCGCTTCCAGCCACTT 1136893 36 100.0 37 .................................... AACCTCTCCCTGTCCTGCAGGACGCGGAAGAGGTTCA 1136820 36 100.0 39 .................................... ACGCGAACACGACCATAGGGAGTGTCCTCAAACCCCACA 1136745 36 100.0 37 .................................... CCCAAGAAGCTCCACCAGCTCCGCCACGTCCTCCTCG 1136672 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =============================================== ================== 7 36 99.2 38 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCTCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGGAGTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTACCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTAAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGTGGGGATCTTGAAAGCCGTTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTAGGGGGGTACC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATTTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCGCTTTCCCGACTCCTCCCGCTCGGGGGTCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGGCCTCCGCCTCCGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 92158-92424 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 92158 36 100.0 38 .................................... CGCGATGACGATGCAGGGCGCCGAGTGAAACGTTAAAG 92232 36 100.0 41 .................................... ATCACCTTCTTAGGTGTCGGGTTCCTTTTTGCCGTTCTAAC 92309 36 100.0 44 .................................... ACCAAGATGTAGTCATCCCCAAAGTCCTTGACGAGCTTAGTCAT 92389 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 99.3 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGGCTTTCCCAGAGGCACGTACCGCGTCCGTCGCCACACGTACCCCATGGCCCTCAGGTGCCGGGCCACCACCTTGGGGGCCAGGCGGACCCCGAAGCGCTCGGCTAGGGCTGCCGCAAGCTGCGGGGCGGTCCAGACCCTATCCTCGGCCAGCCTTTCCTCCACGAAGGCGGCCATCTCGGGGGTGAACTTCCTGGGGGCTCCCGGGGGTTTGCGGTAGGCGAGGCCCTGGAGACCCTCCCTCACGAAGCGCCTGAGGACGAGGTAGACCGTGGTGCGGTCCTTGTGGAAGTGCTGGGCAATCTTTGGGGCGGTCCAGCCCTCGGCCGCCAGGCGGACCATCATGGCCCACAGGCGGGTCTTCTTGTGGGTCCTTGGGTCCAGGGAGAGCTCCAGGAGGAGCCGGTCCTCCTCAGGGGTCAGCTGGATCCGAAGTGGGGCCGCCATGTTGAGATGATAAGGGGTTGGCACTTAGCTTCCTGGCCTGCGGCTTCACTGCT # Right flank : CTCGCGGGGGCCTTTGGCTAGCCTTTTCCCATGGGAAAGCGTCTCTATGCCGTGGCGTACGACATTCCGGACGACACTCGCCGGGTGAAGCTGGCCAACCTCCTGAAAAGCTACGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAGCGGCTTCTGGAGGACCTGCGGCGGAGGGCCAGGCGGCTTTTGGACCTGGGCCAGGACGCCTTGCGCATCTACCCCGTGGCGGGCCAGGTGGAGGTTCTGGGCGTGGGGCCTTTGCCGGAGCTCCGGGAGGTCCAGGTGCTGTGAGGCCCCGCGTGCACACTTCACACGGGTCCTGGGGAGGCCCGTTTATACTCGGGCCATGCTTGGGGACGGCCTGAGCGTGGCCCTGGCGGGACTTTTGCACGACGTGGGCAAGCTCTATTCCCGCGCCCGCTGGGGCGAGCGGGACGATCGGGTTCCCGACCGCACCCACACCGCCTACACTGCCCACTTCTTCCGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 100454-101620 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 100454 36 100.0 41 .................................... TGGGGTATATCCTCTTTATCCCCGGTATTCTTGACAGGTCT 100531 36 100.0 37 .................................... TTCACAAAATCGTACTTGAGGCAAGCGAAAGCGACGA 100604 36 100.0 38 .................................... CCCTGAGGGGGAGGAGGAGGTGGCTTGCGGGTAAAAAA 100678 36 100.0 42 .................................... TTCGAAGCGCCCCGCCCCGAGGCACTTCCCACACCCTTTCCC 100756 36 100.0 44 .................................... GTGCTCCTTCAAACTCCTCTCCAGAGCCTCCTGGATCAGTTCAT 100836 36 100.0 41 .................................... TCCTCTATCGCCTTGGCGATGACGCCCCTGATGGCCTCGCG 100913 36 100.0 40 .................................... ACTCCCTCTACGCCCCCTAACTCGCGGTACGCGAAGAGGG 100989 36 97.2 36 ........A........................... GACAGGTAAGGGTGTAGAGGTCGTCCAGCTTCATAA 101061 36 97.2 37 ........A........................... AAGTGAGGATGTACCCCCGCCCCTTGAGCTTCTTCTC 101134 36 100.0 37 .................................... CTTTGCGCCGCGCGGCCTAGCGCCGACCGCGTATCCC 101207 36 100.0 37 .................................... CTTTAAGGGAGTCGCCTTCGCCCACGTCTTCCTTGGT 101280 36 100.0 38 .................................... GCGAGGAGCCGCCGCACCCCGATGATGCGCCCCTGGTC 101354 36 100.0 40 .................................... TCCTTCTTTGGGCCAGCTGATGCCCCAGGCAAGCCCCGGT 101430 36 100.0 41 .................................... GCTTCTCCGTTGCGCTGAGTTCGCCGTTGCTCCAGACATGG 101507 36 100.0 42 .................................... GTGTGGCCGCGGCTGCGCGCCGCGCGGCCCTTGCGCCCATGC 101585 36 91.7 0 ..............................G..CT. | ========== ====== ====== ====== ==================================== ============================================ ================== 16 36 99.1 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : CGGCCCGGTCGGCCACCTCCAAAAGCCCCTCCTCGGCCAGGGCCAGGAGCAGGGGGCCTCCTCCTCCGGGAGGAGGTCTAAGGCCAGGCGGAGGACCTCCGCCTCGGTGCGCCCCGTGGCGCGGGCTAAGCGCGTGCGCCTTTCCTCCGGGGCCAGGGGCCACTTGACACGACGGAACAGGCATTTTTCTCGCTATCGCAAAGGGAAGTAAAGTAGCGAAGGTTCTTTTTGAGGCACATTTGGACGGGGTACACCGTTTCAGCGAGGTGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCAGCTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTCCTCCTGTGGCTTTCTATCGGTGTAAGCCCTCAAAAACCCTCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : CGGGCCTGGGCTTGTATCCTTTCCCTAGGAGGCGTCCATGCAAGCCCCGGTGTACCTGTGCCTTCTGGGCAACGACCCGGCCCCGGCCTACTTGGGCTTGAAGGTGGTGGAGCGGGAGGCGGGGAGGGTGGCGAAGGCCGTCTTCTACTCCTTCCCGGCGTGGAACGAGGAGTACGGGAAAAAGCGCCAGGCCTTCTTCCGCCTCCTTTCCGAAAAGGGCGTCCTCTACGAGGAAAGGCCCCTAGAAAAGGGACTGGAAGAAGCGGAGGCCCGGGAGGTCTGGGTGAACCTCACGGGAGGGGCCAAGTACTGGGCGGTCCGGTTCCTCGGGCACTGGCGGCGGCCCGGCGCCCGGGTCTTCCTCGTGGAGGGCCACCGCGCCCTCGAGGCGCCCAGGGCCCTTTTCCTCTGGCCCCGGGAGGAGGAGCGCTCCCTTGAGGCCGAGGCCCTCACCCTGGAGGAGTACGCCAGGCTCTATCTGGAGCCCCTGGGGGAGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 132213-131658 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 132212 37 100.0 37 ..................................... CCGGAGGAGGTCATAGGTGAGAAGGCCGTCTTAGAGG 132138 37 100.0 38 ..................................... CGCCGCCACCACGAGGAGATCCTCGCCGAGCTCCGCCT 132063 37 100.0 37 ..................................... TGCGGCGGGGCCCTGGTGGAGGACCCACTAGGGGGGG 131989 37 100.0 37 ..................................... GTGGAGGGCCTGCGGGAGATCGTCCGGCGCGCCCCGG 131915 37 100.0 38 ..................................... TATGGGTGGTTCTATTGGGTGGTTAGGGGCAACTGGGT 131840 37 100.0 34 ..................................... AGGTCCTCGGCCTGGACCTACAGGCGGAGAGCGC 131769 37 100.0 38 ..................................... CACCAGGTGCTCCAGCTCATTAAGAGCCAGGCGGCCAG 131694 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAGGCTTCCCAACCCTCATGCTGCCCTGAGCCCAGGGCTACGTAAGCCAAGGCCGCACCCCAGACGGCATGGGGCACGCTGTTTGTCCTTTTTCCCTCCGCCGCGACCTTGAGGTAGGCCTGGAAATCCCGAGTGGCCTTCCCAAGGTCGTGAAGGAGGGCCAGGGCCTGCCCCAGACTTGGGGTGCCAAAGTGCTGGGCAAAGCCCCCGGCTAGGCGGGAAACGGCCTCGAGGTGGTCTTTGAGGGCGTGCCAGGCTCCCTGGGGGTTAGGGGTGTGGGCTTTGGGGTCCATACATCCTATGATGAGGGCAATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CCCCAACGCCTGGCCCGGCTCAGGTACCGGGACCGGACGGGGGAGTAGCCCCAGGAGAGCAAGCCAAGCGGCGTTGCCGCCTACGCGGCCCCTCAGCGGATCTGCACCCGGTAGCACACCTCCCCCGCCTCCCCCGGGCCCACGTTGCCCACCTCCACCCTCACCACCCCGCCCGAGACCTCCCCGGCGTCGTCCCCCTGGGAGGCGGTGAGGTAGAGGGTGGCGCTCCCGTGGCTCCAGCGGATGGCCTTTCCCCCGTAATCCGGCACGGAGGGGAGAGGATCCGTGAAGAAAGGCACCGGGTCGGTGAGGACGAACTGGCTCACGGGGGCCGTGCCCAGGTTGCGGTAGGCCACGCAGTACTCCAGCACCTCCCCGGGGCCTCCCCTCCCCCAGGGTGCCGAACCCCGTGCCCTGGCTGACGTTCCGCACCCTCTTCTCCAGCCGGACCTCGCCCCCCGAGACCGTGGTGGTGTCGGCGAGGCTTCGGAGGTCCACCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 4 138645-139200 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 138645 37 100.0 34 ..................................... CCCGCGCACCCCTCCACGGGGCATAGCAGGTCAT 138716 37 97.3 42 ......T.............................. GGGGCGGGCCGCCATATCTGTACCCGCTCTAGAGCAACTGGA 138795 37 97.3 35 ......T.............................. CGGGAGGAGGCGCTGGAGGTGCGGAGCTACGAGGC 138867 37 100.0 38 ..................................... CCCTCAGGGTCCGTTACTTCCACAAAAGTTTTAAAGTG 138942 37 100.0 39 ..................................... GCACAGCTTTCGGACGGTGGCTGGCGAAACCCCCAACTC 139018 37 97.3 39 ....................................T ATGCCCAAGAGGTTGAGCACGCTGCACCTCCTTGCCGAT 139094 37 97.3 33 ............T........................ CCGCCCGGTCCCTGGAGCACCAGCCTGTCCCAC 139164 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.6 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : TGGCTCGTCCGGCCGGAGGGCCTCGAGGACTTACCGCCCCATGTGGGATGAATCCATCCCCATTTCCGCCCTCCAGCACTTCGTCTACTGCCCCAGGCAGTGTGCGCTCATCCACCTAGAAGGAGTCTGGGAGGATAACCTCTACACCCTTCGGGGTCGCCGGGCCCACGAAGGGTTGGACCTGCCGGAAGGGCTGGTGCGGGAAGGGGTGAGGGTAGAGTACGCCCTCCCCCTTTTCTCCGAGCGCTTAGGCCTAGTGGGCCGGGCCGACGTGGTGGAGTTCCACGGCGGAGTGCCCTACCCGGTGGAGCACAAGGTGGGCCCCCGGCGGGCACGCAAGGCGGACGAGGCTACCTCCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CAAACTTGCCATCCTGGTCATGCGTAGTCCCCACGCGTGTGGGGATGGGCCGGCGCTAAAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTCTCGGCCCGCACCGCCACCTCTCCCCCGTCCAGGGCTTCCACCTTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCGGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCCTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : GTTGCATCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 5 153106-153599 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 153106 36 100.0 42 .................................... GGCCCCTGACGAGGTTCCTAGGTGAGGTCGGTCTCCTTCTGG 153184 36 100.0 37 .................................... CCCCCGTGTGGGAGGTGGACCTGGGGGGCCTCGAGAT 153257 36 100.0 40 .................................... GCTCCGGGTGGGCCCCGTCCTCCTCGGGCCCGAGAGGAGA 153333 36 100.0 37 .................................... TGATGCTGATCATTGCTCACCTCCTGCCCGGAGGTGG 153406 36 97.2 42 ...............G.................... AAATGCGGTCCTGGAGTGGGAATACAACGAAGTTTCCGTTCA 153484 36 97.2 44 ...............G.................... ACGGTACCGGCGAAGGACTTGGCCACACCTTGAATGACCGTCAT 153564 36 91.7 0 ...............G................AT.. | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 98.0 40 GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Left flank : GGGATAGGAAAGTGTTGCCGGTCCTCAAGGAGTCAGCGATAGGCCGCCAGCCCCTTGGAGGGCATGGGCACGGGCCAGCCCGTAGGCTGAAGGCGGCCCTTCTGGGGCGAGGGGAGTACACGCCCTTTTACTTACGGAGGCACTAGTCACTACACTTATGCGCGAAATTGCGGGGCGAAGGCACGTTAATCACTTTCTCATCTCCTAGTTTCCCTTTTCAAGGGATTTTCCGCTAAAAAATAGACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGATCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCCATTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGTGGTGCCGTCCGGGACGGGGTTCTTAGGGGGGTACC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCCCTGAGCCTGCCCACCATCCGCCTGAGGAGCTTGTGGGCCACGGCTAAAAGCGCCTGCCTCGCCGCCCGGAGGGACAAGAACCCCCTTTGGGGGCCCCTATCTTCGCGAAAGCTACGTTTCGCGAAGAAGAGACCCCACTGCCCCGCAGTTTCTTGGAAATCCACCGGCACTAGAAAGGACGAAGAAGCCTTTCGGGTACCCACCCCTTCCCCAAGGACCCGCAGCCCTCCCTTCAAAAGGGCGGAGTTCCTGTCGGTTATCCGGCAGGAACCCCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCGAGCGGGAGCGGAGGGCCCGGGAGGCCATCGCCCTCGTGGGCCCGGAGGGATTTGAAGAGGCCCTGCCCAGGGAGCTCTTCCCGAGCACCTGCTTAGACGGGTGCCCTTGGTAAAGGAGATCCACCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 192359-191888 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 192358 36 100.0 37 .................................... CTTCTCCAGCACCCGCCGCAGAGCTGTGGTATACTGA 192285 36 100.0 37 .................................... GTGTCGGAGAAGTTCCAGAGGCGGAAGACGAGATAGG 192212 36 100.0 37 .................................... GGGGACCGGAGGGGGCACCGCATCCGGCCCAGGGAGA 192139 36 100.0 36 .................................... CCGCTACCCCGGCATGGAGTCCTACCAGCCTCCCTC 192067 36 100.0 36 .................................... CTGGCCCGGGACCTCAACGTGGCCGTCCTCGCCATC 191995 36 100.0 36 .................................... AGGGATGCAGGGCGCTTGGATCTTGGCGGTGGCGGT 191923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCCGATGACCGTCGCCGGGCACGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTCTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGACTGCTCTTTTGAATTGCATACTTGTCCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTAAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : TGCAGCCCAATAGGGGCTTGTCTTCACTGGACCAGGAGGCGCACCCCCCTGGCCGGGGGCTTGGCCTCCGCCTCCCCCCGGGGCTCCTCCGGGTCCAGGGCCCCGTCCCCGTCCCGGTCCAGGAAGGCGAGGAGGCGGTAGGTCCCGGGGGAGAGGCCTTCAAGCCGGAAGGGCCCCCCTTCCGGGGGCAGGGCGAGGCTCCGGCAAGCGCCTCCCTCGGAGCAGGCGGAGAGCACCACCCGGGCGGGAAGGGCCTCCACCTGGACCTCCGCCGTGGCCCAGTCCCCACCCCCTTCCAGGCGCACCCGGTAGGCCCCGGGGGCCGTCCCCGTGGGCGCCCGCACCCGGAGGTGGGCCGTGCCCTGGGCGGGGTTCGGGGCGAGGTAGGCGGCAAGCCCCCCTTCCGCCGCCACCCGCACGGGGACCGGGTAGGGGCTTAGGACCTCCACGGGGAGGCTCCCCTCCTCCCCGGGCTTCAGGGCCAGGCGGCCCTCCACCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 7 203222-204195 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 203222 36 100.0 36 .................................... TCCGGCTCGTGAACGGCGAGATTCAGATCATTCCCG 203294 36 100.0 35 .................................... CATCACCTCGGCCCGGGCCAGGACCACCCCCACCC 203365 36 100.0 38 .................................... CCGCCTGGCTCGCCGGCCCCATCGCCCGCCTCTGGCAG 203439 36 100.0 36 .................................... CGCTATGGACCGAAACGACTGCCCACTCGCGAGCGC 203511 36 100.0 37 .................................... AACACAGCGTAGACCGTAACGGCCCCCAGCGCGATGC 203584 36 100.0 37 .................................... CCGAACCGCCGCCTCAGCGCGGTGAGGACCTCGCCCA 203657 36 100.0 34 .................................... GTGCGGCTCGTGACCAAGTAGCCATGGGGTACTT 203727 36 100.0 36 .................................... TTCGGAACCCGCCTGGAGTACGCCCCATATCAGCAG 203799 36 100.0 35 .................................... CGCTGGGCGGGGATCGCGGCGAGCGTGGTCCTCCC 203870 36 100.0 37 .................................... TGTACGCCCTGCGAAACTTTGTGCTCCAAAGCGTGGT 203943 36 100.0 38 .................................... AGGGCCTCGAGGCCCTTCACCAGGAGGCCGAGGCGGCG 204017 36 100.0 35 .................................... CTGAGGGAGCTGGTAAACGAGCTTGGGAACGCCTG 204088 36 100.0 36 .................................... ATTCGCCGCCTCCCAGTAGCCGCGCCACCACCTCAG 204160 36 94.4 0 ............T....................T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.6 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : TCCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGGGCTTTTTGAGTTGGACCTCGAGGTGGCGGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCGGGGAAGGGCTTTTTCCCGGGCTTCACAGGTGAGATGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCGGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCTAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCGATATGGCATCGGGGGTTTGCGCCTTCTGGAAGGTCTTTTCTTGAATCGCATACCCACCTTATCCCCCCAATCGCGCTCGCACCGCTCCAGGACGGGAAAAACGCCCTTTTCTCTCGGGTCTTTCCCTTGCGCGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CTGTCTCGCCTGTCAAGCGACCCCTTGGTGCGGCTGGGTCGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCCGAGGAGCTTGTGGGCCACGGCTAAAAGCGCCTGTTTTTTTCTCTTCCCTCGGGAGAGCAAACGGTGGTAGAAGGCCCGCATCTCTGGGTCATGGCGCACCGCCACCAGGGCCCCCATGTAGAGCTTTCGCCGCAAGAGGGGAGGCCCTTTTCTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATCAGCCCCGCGTAGGAGGCTGCCGCCTTCGCCCGGCCCCAGAGGTGGGGCGGGAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGAAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGACGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 8 213371-212645 **** Predicted by CRISPRDetect 2.4 *** >NC_005838.1 Thermus thermophilus HB27 plasmid pTT27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 213370 36 100.0 40 .................................... CTCTTTCAGGATCCACGCAAACTCCCTTCCTTGGGGCTTA 213294 36 100.0 41 .................................... CCCGGGCGAGAGGGGCGGCCTCGGGGTCCGACAAGGCCTCC 213217 36 100.0 40 .................................... GCCGCCCCAAGTCCGAAAAACACGCTTCTTAACACCTTAC 213141 36 100.0 42 .................................... TTTCTGGACTGCCTTCTGGCCTGAGTGCGAGGATCGCCCTCG 213063 36 100.0 37 .................................... ACTTCAGCTTACGCCTCAAGGCTCACCTCCACTAGGG 212990 36 100.0 45 .................................... GATTGCGACCCAGGGAGGAGGGCCCTGGTTTCGCCTCTTTCAAAT 212909 36 100.0 41 .................................... CGTACGTGTAGAGGGCTTCTTCGCCCGTGTAGAGGGCTTCT 212832 36 100.0 41 .................................... TTGAAGTACTGCTCAAGCTTCTTGCCGAACTCCCCTGCCTT 212755 36 100.0 39 .................................... TTGTAGGCAACGGGTTTGTCCTGGGCCTTAGTTTCCTGA 212680 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ============================================= ================== 10 36 99.4 41 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGCGCTTGTTGGAGGGGGTGAGCCATCCTCTGGGGTTCCGCAAGCCCCTGGGGGAGACGATTGAGGTGCAGGCCCAGCGGCTGAAGGCGGCCCTTCTGGGGCGGGGGGAGTACACTCCCTTTTACCTATGGCGGTAGGGGCAACTCTTGCTATACTTACCCGCAACATTGCGATGCAACTGGCTTTCTTTGCGCTTTTTAAAACAAAGCTCACTTTGGGAGGCGTTTCTTCGCCGATATTTTAACCTGGTGCAACGTTGCGGTGTGTGCTATACTCTTGCCAACCCGGACCTCCGGGTGGGGATCTTGAAAGCCGTTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTTCATCGCCCCTTTCTCCTGTGGCTTTCCATCGGTGTAAACCCTCAAAAACCCCTGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCGGGACGGGGTTCTTTGGGGGGTACC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTTGCGTAGTACTCTCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATTTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCGCTTTCCCGACTCCTCCCGCTCGGGGGTCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCCGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGGCCTCCGCCTCCGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGAAGCCCCTTCACGCAGGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //