Array 1 6-365 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVR01000003.1 Trichococcus flocculiformis strain DSM 23957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 6 32 100.0 34 ................................ AATTTTTGCGGCGGTGCTACAATCAGCAACGGCT 72 32 100.0 34 ................................ CGCACCCGAAGACAGGTAAGACGATACGCGCCAT 138 32 96.9 34 .......A........................ GAAGAACGGCCAACGAATGAACTTTATATAAATA 204 32 96.9 32 .......................A........ AGTGATGAAAGAAAACAGCCTTTTTTTATTAC 268 32 90.6 34 .......A.T...........C.......... CACACCATAAATCTGAGAGATCGTGATGACGGTG 334 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ================================== ================== 6 32 96.9 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CGTATG # Right flank : TTAGCCTATTTTATAAGGCAACTACAGCTATTTTGATTTACATGGGAACATAATTCGTTATTAGATTATGTTCCCGTGTGTAATGCATTCGTATTGTTCTATTACACTCTCCAAAATAAATAAAGACTGGCAACTATCCTTCATGGATAAAATTGCTAGTCTTTATTTGTAGGGTCTATTGCAATCACAAGGGCGTTTTTCCAGTTTTCTCTAAGTCCATTTAAGGGATAGTTTATAATTTCTGTATTGCCATTAAAAATCTCTTCTAAATTATCCATGAACAGATTCCATTCAGACTGTACTTGAAGGGAATGGAAGGAGAGAAGGGATTTTAGAACAAGCAAAGCTACGAAGAGGGTGTTTTTATCTTCATTAGTAACACCATATTGTTTCATGTCTTCCTTTTTTAATCTAGGAAGAACAATATACTTCTTCCCGTAAAAACGGCTATGGTGTGCGGAAATATTCCGAAGGTAACGGGACACGGAGATCCAGCTAAG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 249375-250247 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQVR01000001.1 Trichococcus flocculiformis strain DSM 23957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 249375 32 100.0 34 ................................ CTCGATATGCTTATCGATGCTACGAAGAACTTTT 249441 32 100.0 35 ................................ AACAGAGGCTGGAAGCAGAAAAACAAGCGCAGCAA 249508 32 100.0 34 ................................ TCATAAAAGTGTACCAACCGTTCTATGTGGCCAA 249574 32 100.0 35 ................................ CAGTAGAACAAGCCCGCGTTCGCGCCATTCGTGGC 249641 32 100.0 34 ................................ TACATCCAGGATCTTGTTTCCTTCATCCGACAAC 249707 32 100.0 35 ................................ GGCATGGCGATGGTCGGTATCTTGTCCGTGTTCGC 249774 32 100.0 33 ................................ TCATAAAACGCTTTAAACTCACTGTGAACTTTT 249839 32 100.0 35 ................................ AACAGAGGCTGGAAGCAGAAAAACAAGCGCAGCAA 249906 32 100.0 34 ................................ TCATAAAAGTGTACCAACCGTTCTATGTGGCCAA 249972 32 100.0 36 ................................ ATCGATGTACGCGCGCGCCTCTCTTGTGAGCGTATC 250040 32 100.0 13 ................................ GAAGCTNNNNNNN Deletion [250085] 250085 32 90.6 34 NNN............................. TACATCCAGGATCTTGTTTCCTTCATCCGACAAC 250151 32 100.0 33 ................................ TCAACTTCCGCTTTAAACTCACTGTATTTCATT 250216 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 33 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : AAAGTTGATTTAGACATAAATTTATTAATTATCGCTATAATTCGCAGTCGCACTCCTCGTGAGTGCGTGGATTGAAATCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATC # Right flank : AATTTGAAGTAACGTGTCGTGCTGAAAAGCAAATCGTCGCACTCCTCGTGAGTGCGTGGATTG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //