Array 1 83756-83158 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJP01000004.1 Neisseria perflava strain UMB0210 ERR1203623.17957_1_35.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 83755 36 100.0 34 .................................... CGAATATCCCAGTCAAATTCTGGAAGTACTTTAC 83685 36 100.0 35 .................................... TTTGATAAAACATTTCTTGCATAATGATTCCTTTC 83614 36 100.0 34 .................................... CAATATCATCCTCACTAGGATTCACGCGTTTGAA 83544 36 100.0 35 .................................... ATCTCTGCACGCATTTGATAAAGACGCAGAGAATC 83473 36 100.0 36 .................................... CCCAATGAATCCCACGCGGTTTCACCGCCTGATTCA 83401 36 100.0 36 .................................... AACCTTCGCTGACATTAACAACGACAGCACCTGATT 83329 36 100.0 31 .................................... CTTGAGTAGGTACTTCTTTGCGTTGGTTGAA 83262 36 100.0 34 .................................... GCCATAAAACCAACTTGTACCCAATCATTACCGA 83192 35 83.3 0 .................G....TC......-..TT. | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 98.1 34 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : AGGGAGAAAAAAAAATATAGCGTCGGTGACAACGAAGGCAGCCAATACTTTAAAGAATTGGAAACCGATTTGAAGCAGGCCGCAACGGACGGACGCTTGAGCAGCCAAGACAGACAGCAAATTACCGAGCAACTGGCTCTAAAACCCGTTTTACAGAAACACCAGCCCAACTGGTTAACAAGTAAACGCGAGAAAAGCATCAAGGAACTACTAAAAGCTTTACAAAACAACTCAAGCAGATAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATGGCTTGGATGTTAAAATGACAATATTGTTCCCAATAGGGGACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGACCATTTTAACCTACTGAATTTAATAGAGAAAACACCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTGTATTTAGGGTTTCAGACGGCATTTTTATAAGGAACGGCCATCTATAAGACGGCCTTTGGTTTGTCAGCCCGAAATGACCGGAATATGGCCGCACAGTACGATGCCTTCCGCCAAGAGGCTGCCTTTGAGTTCGTAGATGGGGCTGTGCGGGCTGAGCGGATAGATACGCAAATCGTCTGCCTTATCCAACATTCCGGTCAGTTTTTGAAACAAATGTTGCGCTTCTTCTTGTGTGCCTTTAAAAATGAAGACGCTGTTTTGCAAATGTAGCGCTTGTCCACTTAAAAAACGGTAAGCCCTGCCCAATCGTTTACGGTCGGTAATATCGTAGGCTATCAGCCAGTTTTGTTTCATGATGCCTCGCTTTCTTCATCGGTTTCGTTTTCTATCACCATCCAGCCGCCGTCAAGGGCGATATCGGGCTGACGGCTGACTGCCGCCAGATACTTGAGCAGGCGGATGCAGCTTTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 86284-85612 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJP01000004.1 Neisseria perflava strain UMB0210 ERR1203623.17957_1_35.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 86283 36 100.0 37 .................................... GATGTTCATTTTGTAGTCCTTTCGTTTAGGTTAATGG 86210 36 100.0 33 .................................... TCAGCAAACTCCTTGGATGCTTCCGCGTAAAAC 86141 36 100.0 36 .................................... TTTCTGGTGAAAGTTGTAAGCTACGTACGATTTTCT 86069 36 100.0 35 .................................... CCTCAGGCTGAAGCGGACGTTATCCGCTTTATTGG 85998 36 100.0 34 .................................... GCAGCAGCTGCTGCTATCGACATCATGGTCTTAC 85928 36 100.0 35 .................................... ACAGTCTGTTCAACAGTGTTACATCACCGTGTGCC 85857 36 100.0 35 .................................... ACTGTCTTTAGCCAACAGTACACGGTCTGAATGAG 85786 36 97.2 34 ...........T........................ GTTGAGTCTAGGACGATAGAGCCAGCGTTAGAAA 85716 36 97.2 34 ...........T........................ GCATTTTTGTCGGCATAGTCGCCGTCCAATGCCA 85646 35 86.1 0 ......................TC......-..TT. | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 98.1 35 CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Left flank : GTTTTGAAAAACGCATCATCTTCTCCGGCATCGCCGCGTCTTACCCGAATCCTGCCGAATTGAACGGCCGCATGGTCATCGCCGTCGCCAACTTCGCCCCGCGCAAAATGGCAAAATTCGGCGTATCCGAAGGTATGATCCTCTCCGCCGCCACAGCAGAGGGCAAACTGAAGCTCCTCGACGTTGACGCAGGCGCACAGCCCGGGGATAAAGTGGGCTGATACCTTTTACCACAGCACAAAGCAAAGGCCGTCTGAAACTTTCAGACGGCCTTTTACTAAAATATGCTTCTCAAGCAATAGCTTGAATGTTAAAATGACAATATTGTTCCCAATAGGGAACAATAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCTTATTTTTCAGGCGGAAGCCTTATTTTCTATGTTAATCCCCGTTTATCTTTGTGAATATTTGTAATTTAGATATTGGCCATTTTAACCTGCTGAATTTAATAAAGAAAACACCCCTCCGCT # Right flank : AACGGTAAACAAATGCCGTCTGAAACCTATATTTAAGGTTTCAGACGGCATTTTTTATAAGAAACGGCCACCTATAAGACAGTCTTTGGTTTATCAGGCCGAAAGGCCGGTGATTTTACAGCCCGGCCGTGATCCGATAGCCTCCATGCCCGAATGTGGTTTCTTTTCCGATATGCAGCCATTGTCCAATATAAAGTAAAGCCGACAATTCCTTAGGAAGATCATAGAAAGTCCACTCTCCCATTACTCCTTGATAAGTCATATCGCGCTGTTGTCTGTTGGAATGACGTTTCCATTTTGTATCAGATAAAGATTTTCTCCCCCTGACAAGCTCTGTCGCCCTGATTAATTCTTGAAACCTGCCCTCCAACGGATGTTCCCAATGCGTCGTTGCAATCGCAGAAATATCGCGTATTGCCTGACGCAAAAACATGGATTCGGTCAGCTGTCCGGCTTTCATCACCTTTTTGTCGTGCCGTATCGTCAACGGTGTCAACAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAGAC # Alternate repeat : CTCTGAAAAACTTCCCCACCACATGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 44112-45476 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJP01000001.1 Neisseria perflava strain UMB0210 ERR1203623.17957_1_35.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 44112 36 100.0 32 .................................... GTAGAATACGAAACTGAAACCCGTCACTACGC 44180 36 100.0 34 .................................... TACTGGGTCAGGTACAGGGTGCGGTACGAGGTGT 44250 36 100.0 31 .................................... CGCAAGCAAGACGTATTGGTTGACGACGAAG 44317 36 100.0 33 .................................... ACCACAGTAGAGTCATATTCAAAATCAGGATAA 44386 36 100.0 34 .................................... TCTTCGAGACGTTCTACTTCCTTGACGAGAGTGT 44456 36 100.0 33 .................................... CGAGAAAGCTAAAACTTTAGCTGCCTCCTTCGG 44525 36 100.0 34 .................................... GTTGGACGACTACACGTGTCATGCAAACAGCACA 44595 36 100.0 35 .................................... CTGGCAAGACATCTACATAAAGGTACCATTTTCCT 44666 36 100.0 33 .................................... TTACCAGCCTTTACAGACTCCACACGTTGTACC 44735 36 97.2 33 .............T...................... CTGAAGGAAGTTTTGGGCGCGTTGAGCTGCTGC 44804 36 100.0 34 .................................... GACGTACACAGTCGAAGCAATACGCGTCGATTTG 44874 36 100.0 36 .................................... GGTAAGATGTCCTACCTTGTAGTGCACCATTGATAA 44946 36 100.0 35 .................................... AGCCTACTTGCAACCAGTTTTCACCCAGTTGGATG 45017 36 100.0 34 .................................... CCAAGGTTTAGGTGCTACTGCAGGAATCACTTTG 45087 36 100.0 36 .................................... CGTGCCACAGTTTCGCGGCCCAGAGGTGAGTTAATC 45159 36 100.0 35 .................................... GCTACGAAGAGCAGGCAAATGATGACCATCGCAAT 45230 36 100.0 33 .................................... AGATTACGGAATGCTTGGTAAAATGCTTTTTTA 45299 36 97.2 35 ................T................... ACACTGGATACTTCCAATTTAGTGTCCAAGCGACC 45370 36 100.0 35 .................................... GCCACGATGTTGCGCATATCCTGCGCCAAGTCCGC 45441 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 20 36 99.7 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTACAAACTGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCGAAATGGCTGACCGACAAGCGCGGAAAAGATCTGAAACCCATCTTAGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAACATTTCAGACGGCCTAAAGCCGTAAAACAGTTAAAAAGCGTTGTCGAATACGGAGTACACGGCTATAATTCGCAATACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTTAGTTAATATTTCGTTAATTAATGTCTTTGTTTATTAAGAAAAATGCTAACATTTCTTAACTATGCAGAGCTTTGAAAATAATGAAATTTTTTAATTGAGTGCA # Right flank : CCCGTTTTCGTTTCTCATTCGTGCGCCGCAATGCGTCGGAAGACTTGCCCTGCTAACGTTGGGGACGAGTGTTTTTCAGACGGCCTAAAAGCAAGGCCGTCTGAAACGGTTGGATGGTTTATCCTGTCCCTCTTGCGGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTAGTTTTTGGTACAAAGCAGGCTGGGAATGCCGGATGGGGCCGTCTGAAAATCAGGCTCTGCTGTCGGGTTGAGGCTTAAAAATATCGGGTTGTCCATCCTTTATTTGTATTTTGTTTTTCATCAGTCGGCAGGCGGTATATAAGCAGGTTGGTGTTTACAGTGTGCCGAAGTTGCCCAATATGATGCCTTCGGGCAGGGCGGTTTGCCCCAAAGTATGGATGATGCTGCTGTTGGCCAGTGGGTAGAAGCGCAAGTCATCCTGTTTGGGATGGAGCATTCGGCATAGTTCTTCAAAGCATTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 51426-50472 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJP01000001.1 Neisseria perflava strain UMB0210 ERR1203623.17957_1_35.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 51425 36 100.0 35 .................................... CTAGCTCTTTCAGCCAGAACCCACTCTTCTCTTAC 51354 36 100.0 33 .................................... TTTGATAGCATTTGCAGATGGTCGTTTGTTGAA 51285 36 100.0 35 .................................... AAAGTCTCTGCTATAGAAGCAGCAGATTTGAACAG 51214 36 100.0 33 .................................... ATGGTTTGATGGTTATTTGCCCAATTTCTCGGC 51145 36 100.0 34 .................................... GCCAGTCGGCTGGCTCGCATGGTCTTGCGGATAC 51075 36 100.0 34 .................................... TTATGCCTTAATCTACATACTTCTCTAACCAAGG 51005 36 100.0 33 .................................... CGTTTGTCGTCACCATAAAATTTTCCATTCCAA 50936 36 100.0 35 .................................... GTCTTCAAAGCGTTCTTTGTAGCATACTTTACCGC 50865 36 100.0 35 .................................... TTCTTCAAAAACTTGTGTTTCAATATTTGAGTTAT 50794 36 100.0 34 .................................... TAACATTTGTTTTTGTTTCTCTAAGAATGATTGC 50724 36 100.0 34 .................................... AGTAGTCTCTTCATTGCTTACTCACCTTCGTATT 50654 36 100.0 34 .................................... TCATTGCTGATAAAGAATGGCTCAAAAACAATGC 50584 36 100.0 35 .................................... TTGTCAGCCGTTTTCTTAACCCACTTCTTCATCAA 50513 36 88.9 0 .......................TT...C..T.... | CT,TA,T,T [50476,50484,50487,50495] ========== ====== ====== ====== ==================================== =================================== ================== 14 36 99.2 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCGTAAAAACCAACTGATTTTTTGCGAGCTCAAATCCGATTTAAGCTCCGAAAGCAAGCTGGCAGACCCACTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTTTGTCGCCCGTCATTAAAAACAATGCAAAGCCGCAGCAATGGACGGCATTCGAGCGCAACTGCGCCGCCAAAAATATCCAAATCATCATCGCCGTCAACAAAGAATCGCTGAAAATCCTGACAAACTGACATCAAAATCCCCTTAACACTTTACTGTCGTCTGAAACAGCTAAAAAGCATTGTCGAATACAGAGTACAAAGCTATAATCTGCATCACAAGTTTTCCGACGGATAACGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATATTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACATTTCTTAACCGTGCAGAGCTTTGAAAATAATGGGATTTTTTAATTGAGTGCA # Right flank : GGCCTTACTTTAAGGCCGTCTGAAAATATCCGCTGTCTTACCCTTTTCATTGGGACAAAAATAAAACGGCCTTGACGGTTTGCTCCGTCAAGGCCGTTTTATTGTATCCGGCGTATCTTTACAGTGTCCGAATAATGCGGTACTGCCCGTTGCCGAATACCGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGTGCGAAAGCGGGGGAAAGGTCGGTCAATTGCCATGTTCCGATGATGCCGCTCAACGGCGTAGTTTGCTTTTGACGGTTGGAAAAGCGGCGGTGTTCGTGCCATAAAAGCTGCGGAGACTGTCCTTGTCCTGCGGCTTGTACGGTCAGCTCGGCCGTGTCGGCGTTGTTTTGCCAATAAAGCCGGGCAAGCGTCAGATAGCGGCGCATAAGTTGGCGCAGAAAAATTGCCTGAGTCATTTCGTTCTCGCGCAAAATCCTGCCTTTTTGCTGGATACGCAAGGGGGTGAGCAGCTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 3 195335-202611 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJP01000001.1 Neisseria perflava strain UMB0210 ERR1203623.17957_1_35.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 195335 33 97.0 33 T................................ TTTCAAATCGTGATGTGTACCTACAGATACTTT 195401 33 97.0 34 T................................ TGTTGTTGGTCATCCTGATGCATCATTGGAACAC 195468 33 97.0 33 G................................ CTGTTATGAAAATCAAATCGCCTGCTTATGTGG 195534 33 97.0 33 C................................ GTTTCAATATTGTTCAACCTGGCTCTGATTGGT 195600 33 97.0 33 C................................ ATATGGTGAATTGGTAACAGCACTACCTAATGT 195666 33 97.0 32 T................................ TACTACCAAGATTCGAACATTGAAGTAATTGG 195731 33 97.0 33 T................................ TGTCAACCCAACGTAAATTTGTTTTTGATGATA 195797 33 100.0 34 ................................. CGTAATTCTGACAACATCTCTACTACTGAAGGTG 195864 33 100.0 34 ................................. CGCAAATCACGGTAGCCGATGTGTTTGAAGCCCA 195931 33 100.0 34 ................................. ATTAATATTTATTCTGATAAAATCCCAATGATTT 195998 33 97.0 35 T................................ ATCCACGCGGTCAAGCAGATATTGCGGCCAACTGA 196066 33 97.0 35 C................................ GTCGATAAAGATTAATTATTTAAAAGAAGAAGGCC 196134 33 97.0 33 G................................ TGCCGTGGTCGTTGCAAGTCATAGGCTTGTACA 196200 33 100.0 33 ................................. AATCAATTCTTTCGGCAATTTGCCCCATATGGT 196266 33 97.0 34 T................................ TTGGCGGCGGCGCGCCTCGGCGGTGCGCTCTTTG 196333 33 97.0 33 T................................ TTCTGTTTTCAAAAAGTGTCCAACAGGTTTTGG 196399 33 100.0 33 ................................. ATCAAGCCATTGTTCATATTTATCAACAGCTTC 196465 33 100.0 34 ................................. ATGGATTGACCGACAAATCCAATACTGGCAACAA 196532 33 100.0 33 ................................. TTAACAAATACGTATATCCGCCGTCTTATATGT 196598 33 100.0 34 ................................. CGTGTCAATAAGACTAAGGGAATTTATACCACCT 196665 33 97.0 34 T................................ CGTGTCAATAAGACTAAGGGAATTTATACCACCT 196732 33 97.0 34 T................................ ATTATCGATATTAATGAAAAATGAGAGAAAAAAT 196799 33 97.0 34 C................................ TGCAGGGCATCTTCGGCGATGACGCCGAGACGCT 196866 33 97.0 33 C................................ TTGTATCGCGCGTTTGAAGCCGTCATGCGCGAA 196932 33 97.0 34 T................................ ACGGATAAGCGTAGGGATATAATATGCGATATAA 196999 33 100.0 32 ................................. ATTATTGATATTAATGAAAAACAAGAGAAAAA 197064 33 100.0 32 ................................. TACGCCCCCGATGGCATCTACTGCCAGTCTAA 197129 33 100.0 36 ................................. GATTACCACCGCCATGCCTAAGGCGTTGACGGAGCG 197198 33 97.0 34 T................................ CGGAGAGATAGATAAAACGCTGGCCGACTTTGAG 197265 33 97.0 33 C................................ GGCTTTGGTCTTGGCGGCGGTGTAGTTTGCGGT 197331 33 97.0 33 C................................ ACACATAAAGAGCTGACGAAATTCCGCTGGCGA 197397 33 97.0 32 G................................ AGACCGCCTTAAACCCAAACGCCTTTTAAAAA 197462 33 100.0 33 ................................. CGGCAAGCAGTGGCTGACCGCTGAAGACGACAA 197528 33 100.0 33 ................................. ATATCGCGTAAAGCCGACCGTAAAAACGACCGT 197594 33 97.0 34 T................................ TTGTGTGAGTTGATTCACGTTCATTTATCGCTCC 197661 33 97.0 34 T................................ CGAAATTGGTGCAACAGGCCGTCTGAAATTGGGA 197728 33 100.0 34 ................................. GATTATGAGCCGTTTTATAACGTAGGTCATTCCA 197795 33 100.0 33 ................................. AGGTAAGTTCAAAGGCGCGTTAATTAACGGCCT 197861 33 97.0 33 G................................ GCTGTAGCCTCGAACTTCTCGCCGGTGTTAGGC 197927 33 100.0 35 ................................. TTCGCCGATGGCAACCGCTATATCTTCGGGCGCAA 197995 33 100.0 34 ................................. GGGTGTATCGCAACAGCCTGTGTTGCAATCCAAG 198062 33 100.0 34 ................................. TTAGTAAAGGCATTGCGGTTTTCATTTTCGATTT 198129 33 97.0 33 C................................ AGTGTCACAATCAAGGATGGCGTTTTGCAGTTC 198195 33 97.0 33 T................................ CGTACATCAATTAAGCAACGGCAAACAAATAAA 198261 33 97.0 34 C................................ GTTATAAATGTTAATGATTTTGATATAAGAGGGG 198328 33 97.0 33 G................................ TGCCGTCCGAAAAATAAAACGGCTTTAAAAATA 198394 33 100.0 33 ................................. TTTGATGAGCTGGAAATAAACGAATCGGGCGAA 198460 33 100.0 34 ................................. CATTAGAATTCTTGCCAAATTTCATGTTGCTACC 198527 33 97.0 33 C................................ TTTACTTGGATTTCACGCAATAGCCTTTGGTAT 198593 33 97.0 34 T................................ CTAATTGCAACATCATATTAATAGCTCGGCCTGC 198660 33 97.0 34 C................................ GTATCATTCAACCAATCAGACCCAATTTGCGAAA 198727 33 97.0 32 C................................ TATTTGAGCCATAGGCAAATTTTGATTATTTG 198792 33 97.0 32 C................................ GCCCGATTCCGTTGCTATGCGCGCTATCTTGG 198857 33 100.0 33 ................................. TCTTAACTTACAGGAAAGACAAAATGAAAAAAT 198923 33 97.0 34 C................................ TGGACGGCCTTTGTGTTTGCGTTGAATTTGCGCA 198990 33 97.0 34 C................................ CATGAACATGGATCAGATGTGGGGCATACCCGAT 199057 33 97.0 33 T................................ ATGTTTCTTGAAGCTAAGAGATAGGCGTTATCT 199123 33 100.0 33 ................................. GACCTGTATGCGGCGAACATCATCGATGTAACC 199189 33 97.0 33 G................................ ACAACGTAGAAGCCTACCGCAATGAAAACCGCA 199255 33 100.0 33 ................................. AAGAATGAAGCCGCTATTGCTATTGGCGCGTCC 199321 33 97.0 34 C................................ AATTTCAGGCAACGAGGTCAGCGGTAGGAATGCT 199388 33 100.0 34 ................................. TCTGCATCGCTGAGTTTACCAAAGTCGATGCGGT 199455 33 97.0 34 C................................ GAGCGGACAAAAACACCTCTACTTGTTTTAGCAG 199522 33 100.0 33 ................................. GTTTTAAATCTTTTTTGTGTTTTTGTGTTATTT 199588 33 97.0 34 T................................ GCGTAAGACTGGCTTGTATGTCAGCAATGATGGT 199655 33 97.0 34 T................................ TACAATCTTCTGTTGTCGTTCCCTTTAGTATTGG 199722 33 100.0 32 ................................. AAAGTAGAAATCCATTGCCGACTGCAACACGT 199787 33 97.0 33 C................................ ATCCGAAAGTATGCGCGTAAGGCTGATTTAACC 199853 33 97.0 34 G................................ TAGTCGCGGTGTCGCAGGGTAAATGGATTACAGC 199920 33 97.0 32 C................................ TATGTCCTATGAACTTATACCTGAGCTGCAAG 199985 33 97.0 35 C................................ CCCTGCGGCTTCGCGTTCGCGGAGATGTGCATACA 200053 33 97.0 32 G................................ CCCAGTCGGCGTGCCAGTTGTCATTGTCGGCC 200118 33 100.0 35 ................................. CCCCGCGCATGAATAATAGTATGCGGAAAGCCGAA 200186 33 97.0 33 G................................ CACACCACCATCAATTGCTCGCGCTCCAACCGT 200252 33 97.0 33 T................................ TGCAATCCGTATCTGACCCTTGAGCAGAAGTAT 200318 33 97.0 34 C................................ AAGTCCCCCCATGCCGCACGGGTGGCGACAACAG 200385 33 97.0 34 C................................ GCGTCATAGGCGACATACACAGTTGAAACTTGTG 200452 33 97.0 33 T................................ CGCGAAATGGAAGGCTCTTTCGCCACTGGCGAC 200518 33 100.0 33 ................................. TTTGTAAAATAGGATTGTTTGCTGGTTAAGGCT 200584 33 97.0 33 T................................ CTGCCACATGCATGGTTTTGGTATCTGGTCTTT 200650 33 93.9 34 T........T....................... AGACGGGGTTTAAGGTATTGCAGGCGGCGGAAAC 200717 33 100.0 35 ................................. CGATTTGGTCTTGTATTGCTTGGCGCTGACCGGCA 200785 33 100.0 35 ................................. AACGCGGGTAATTTTTGGGCGTATTGCATTGGTCA 200853 33 97.0 34 G................................ AATCATCACATAATGCTTTTATTGATGTTTTAAA 200920 33 100.0 34 ................................. CCCGATGGTCGGCTGACCCAACACATCACGAAGC 200987 33 97.0 33 C................................ CATGCACCTTTTAACCGTGCGCGAGGACATGGC 201053 33 97.0 33 G................................ AATGCGGCTTTCGCGGCGGTGGCAAAATCTGCC 201119 33 97.0 33 G................................ CGCCAAAGAGACTTATTACGCGGAATCTTTATA 201185 33 97.0 33 C................................ CGTCGCTGCTTGACCGTGCGTTGCAATCGGGCG 201251 33 97.0 33 C................................ CAACTGACTGGCGGCCACACCGCCTGGGTAGTG 201317 33 97.0 35 T................................ ACTTTCGGCAAAATGCTGCTGGCTCAATTCCGCGA 201385 33 97.0 32 G................................ TTCCAAACTCAACAGACTAATAAAAGGCCGCG 201450 33 97.0 33 T................................ CTGACGATTCTACTGTTGACGGTAAGGTCGTTC 201516 33 97.0 34 G................................ ATAGAGTGCAACAAAAAGACGGGCGTAATTTGCT 201583 33 97.0 33 C................................ AGAAGTTCTTGGGTACCAGTGAGGAACTCACGG 201649 33 97.0 33 G................................ CCTGCATCAGTTTCTAGGCTATCTTCTTTAGCT 201715 33 97.0 33 G................................ CGGCATCGCCATCGGCGACCGCGCGCAGGGCTT 201781 33 97.0 34 T................................ AAAAAACTATTTCAAACCTGACAGCACAAATACA 201848 33 97.0 33 G................................ CGCATGATGGCTATTAATATCAGCTTTATATGT 201914 33 97.0 33 T................................ CGATACGTGCAAAGTCGTTGCCTACTTGTGTGG 201980 33 100.0 33 ................................. GTTTTATCTTAATAGCCATTTTATCCGGGCTAT 202046 33 97.0 34 T................................ TTGCAAGATGCTGTCGTCCATATTGGGGAAGGCT 202113 33 97.0 33 T................................ GTGCAAGAAAAACACCCCAAACATTTGGCTGCC 202179 33 97.0 33 T................................ TTTCCAATAGACAAGCTCGACTGTGAATTTATG 202245 33 97.0 35 C................................ GGTTCCTACTCTGGATAAAGAAGGGTGGTTACAAT 202313 33 100.0 35 ................................. CATACAAATCATCAAATACTATTTTTTATCATGAA 202381 33 97.0 33 C................................ GTCTAAAGTCAATGAATCTGAAGCAAAAATTCA 202447 33 100.0 33 ................................. CTGTCACAGTTTTGTTTGATGGTGGTCTGTACA 202513 33 100.0 33 ................................. CGCAAATACTTGCAACCACCGAAACGCCTCCCA 202579 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 110 33 97.9 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGTGAACTGGGCTTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCGCTTTTCTTGTGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGTAGCAAGGCTTTTAAGAGAGGC # Right flank : ATCTGCCACCGTATCTCATGTCTGAGTAGGGACGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGACCCCCTCATTTACTACGCTCATTCCGCCCAAGATAAACTCGGCAATCCCTTGCCTTACAAACCATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTGGGCGAAATGGCGGCTGAGTTTGCCCGGGTATTTGATGCGCAGGAAATTGCCTGCCAGACGGGACAGCTTCATGATTTAGGGAAATATTCAGTTGCCTTTAATCACCGATTGCATGGCGGCCCTTTAGTCGATCAT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //