Array 1 53393-53833 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZO01000002.1 Paenibacillus xylanexedens strain DE0359 NODE_2_length_429214_cov_43.854177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 53393 33 97.0 36 ...............T................. CTCTTCTGCAAAGGCTTCTCTACCTAGGCGCATAAA 53462 33 97.0 35 ...............T................. AATTTGGGGGTTGCATGTATTTCCCAATCGTGATA 53530 33 100.0 34 ................................. ATCCTCAACGGTTGAACCCGTCCCACGGGCAATA 53597 33 100.0 35 ................................. CGATAAGCAACCAGAACAGTGTCGTTGTTGTGGGT 53665 33 100.0 35 ................................. AGATGTGTTGATTATTGATGAAGTATTTGATTTGG 53733 33 90.9 35 .........C..........T....G....... ATTTAACTACCATATAGACCGAACTACACCTGGGG 53801 33 72.7 0 C..A........G.A..A.....T..A.C..T. | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 93.9 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CAGCCGGATATTCTGCTCTTCGATGAGCCGACATCTGCACTTGATCCAGAGCTAACAGGTGAGGTGCTCCGTGTAATTAAGCAGTTAGCACAGGAGAACATAACCATGATGATCGTGACCCATGAGATGAGCTTCGCCCGTGAGGTAGCGGATCGCGTGTTCTTCATGGACAACGGAGAAATTGCCGAGGCCGGCCCACCAGAACAGATCTTTGGCGCGCCGAAACTGGATCGTACACGGACGTTTTTACAACGAGTAGAGGTGGAAGGGTAGAAGGCAGTGTGGCAAGAACGCGACCAGGTGCGAATGCCAAGCTCCCATGAAATCCCTGGGGGATTCGCACCGCTCATTTTGTCGAAAAGGCCATTTTGTTGCCATTTGGCAATGAGTGGCTTGAATATTTTGGGATTTGCTATTAAAATAAATGAATAATTAGGTTGAATGATTGAAATCACGTAATAAGGTATTGCGAGATACTGTTGTTACGTGATTTTTTCGCT # Right flank : TTAATGTACATGCTTAATCTACACAGAATAGACTACCACAGCACAAGAACAAGCCTCTCTATTCTAAGAGAGGCTTGTTCAATATTTTCACTAAATCAAGAATTATATCCGTCAAACAGCCATTCTCCTTCAGGCGAACGGACAAAAGAAAACTCATATGCGGCATGTCCTTCAGAACCCTCTGTATAATTGTAATGGGCTATGAAGAGCATAAAATGATCTGAATCCGTCTGATCGTAACCTCTGAATTCGAACTCATCCCACGCTAATCCGCTTATGAAGTTGACCTCATAAGAATGACTTTCCTTTACAATGATGAATTGCTTGTTATCCTGAGATATTTCCACGTTTGGTGAGGAAATGGACTTCATGTATGCAGTATCCCCTGACTCCATGGCAGCAATGAGCTTGAATGTCATATTCAACGTTTCTCTTAGATTATTTCTAATCTCCTCACTATTTACATCTACCTGAAGTTGATTGATCTGCTCCTGAAGTTG # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTGTATGTAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 59334-61667 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZO01000002.1 Paenibacillus xylanexedens strain DE0359 NODE_2_length_429214_cov_43.854177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 59334 33 100.0 35 ................................. TCCCAGACGCCGCTTAACTATCCGAGTACAACTAT 59402 33 100.0 32 ................................. TATCCTCTAAAATCATAGCGTTACGTGCTACA 59467 33 100.0 36 ................................. AGTTCGGGATTACAAATATTACAACCATAATCAACG 59536 33 100.0 35 ................................. ACGCCTAAAGCGACCGCAAAAGCAATCATAGCACT 59604 33 100.0 36 ................................. GGCATCCAGGAACTTGTTGTTCTTGTATGTGCTGTG 59673 33 100.0 35 ................................. ATCACAGATGTGATCAGCATGTTTTCGATTCGCCG 59741 33 100.0 36 ................................. ACGGGAGAGAGGATTGTAACGAAGTATTGCCCTCAG 59810 33 100.0 36 ................................. CAATATAACAATAAAAGACAAGCGACTGAGCCTACG 59879 33 100.0 35 ................................. TCGTACAGCGCTTGAAGCACCCAGCATAGTAGCTT 59947 33 100.0 34 ................................. CGTTTCACCAACTCATGATTGACTCGCGTCTTCG 60014 33 100.0 34 ................................. ATCTCCACCCGCGGATACCCATCGGAGCTTTGGA 60081 33 100.0 35 ................................. TGGTCGATGTTCTGAATCGAATGGTATCCACTCTA 60149 33 100.0 36 ................................. GCAAATGACTCGAACACCTCCGTCCGAATCGTTCCC 60218 33 100.0 35 ................................. ACTGTGAGATATTCACTCAATGCCTGTATTTGCTT 60286 33 100.0 35 ................................. TTATTCCGTATCGTTTGAAGATGCGTCTGGTAATC 60354 33 100.0 34 ................................. TCGTAGAAGCTAAGAATGTGCAGTCCATAGGAGG 60421 33 97.0 35 .........T....................... GTCCCGGAAATAAGGTTCTCCGAACTTGCGGACTG 60489 33 97.0 34 .........T....................... TTGCTTTTCCACCTACATACACCCCATTTTCCGA 60556 33 97.0 34 .........T....................... CTGAGTGAGTTCCATATTTATCCTCCTTAGTGTT 60623 33 97.0 34 .........T....................... TACAGGTGTACCATTAATCGTGACCTGACCTTTC 60690 33 97.0 36 .........T....................... GGCAGGTACCACAACCGAAGTGAAAAAGTTATCACC 60759 33 97.0 34 .........T....................... TCACAGTTATATCGTTCATGGGACTGATAGCTGA 60826 33 97.0 33 .........T....................... AAATCATGATGAAGAAATTGAGCTGGTGTGTGG 60892 33 97.0 33 .........T....................... CTAATGATATGAAGCACTTTAAAGATGTTACTA 60958 33 97.0 35 .........T....................... GAGTCTAAGGTGACCAGGACATTATCATCATTGTA 61026 33 97.0 34 .........T....................... AAAGATATCAGGTTTACAAGGGTAGAACTCACCC 61093 33 97.0 36 .........T....................... TTATGCTGACTGGGCTTCTTGTTGGTCTGCCATTCG 61162 33 97.0 35 .........T....................... AGAGATGTACAAATTGCTACAATCATGGGGGACAT 61230 33 97.0 35 .........T....................... AAATAAAGAGTTTCGTCCACACAGTCCAATTACGC 61298 33 97.0 35 .........T....................... CCCGTAAGATGTACGTATAATCCGTGAACTCCATA 61366 33 97.0 33 .........T....................... TTTAGATGAGTTACCTGTAAGTATAGCTGCCTT 61432 33 97.0 35 .........T....................... TGAACGTCTAGGCCGAGTGCCTTGGCTGCCCCATC 61500 33 100.0 35 ................................. TCAATACGTGCAAGCTGGATCTGAATATCTGTAAG 61568 33 93.9 35 ...........C.......A............. ACAGTTTCTGGGTCCAGGTCTGGATACGTTTGATT 61636 32 90.9 0 .........T...........A......-.... | ========== ====== ====== ====== ================================= ==================================== ================== 35 33 98.2 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : AGCTCTAGATGCTAACGTGAGATCGGATCAGGCTGCCTTTCGAAGTTTGTTCTTAGATCCAGAAGCAGCTGATCGGCATTGGGGACAATTCGGAGGCAACGTAAGATATACGGAGATTGGGCACGTTTCTGAGGACACAACGAAGAACCACATTCTTGTAGGTGTGCTCGGTGAAATAATGAGAGATACCTACGATGTAGAGGTGTATGGGATTACGTATTATTTTGCAGAAGACGAAGGTGGAAAGTGGGGCTTGGTAGCCGTTGATTGATTGTAGACTAAAGCAGGGTTGGTGATGGTGCGAATGCCAAGCTCACATGGTTTTCCTGGGGGATTCGCACCTCACATTTTGTCGAACGTGAGATTTCTGTGACCTTTTGGCAATGGAAAGCCTTGAATTTCCCTTGTCGTTTATCATATGATGAGAGAATAAGTGTAACAATTACTGGGAATACGTGATAATTTGAATGTGGTATGACTTTATTACGTTTATTTCCGCT # Right flank : TTTCGCGGTCGCATCCGAAGCTTACGTAAGCCTTGTCGCACTCTATACGATCCTTAAATGAACTACACAAAAAGGCATATCTCACTCGATGAGGTATGCCTTTTTGGATTCAAGAAAGGAAGAAGATATGTGAATCGACTGAATCTAACATCAAATTACATAATATTATATAAAAATACGATTTTTAGAAGGTGAATAAATGTGAATGTCGAAAATAACTATACAAGTCTTTTTACCTATTTAATTGGGGAGAAAGGTCTTGAAAAACAATGGTGGTGAGCAGTCATGAGCTACATTGCGCATATCCGTCAAAAAGACAACCAGATACAGACTGTACAAGATCATTTAAACGAGGTACAGCAGGGAGCAGAGCGAGCTGGAGAGAAGATTGGCATCAAGAATTTAGCTGGGATAACAGGTCTTTTACATGATATGGGCAAATACACCGATGAGTTCCTAAGTTACATTCAAGAAGCCGTAGCAAATCCCGACAAACCTCC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 70750-72553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDZO01000002.1 Paenibacillus xylanexedens strain DE0359 NODE_2_length_429214_cov_43.854177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 70750 33 100.0 35 ................................. TTTGGTCACAACATAGATTCCAGGCTCAAATGCTT 70818 33 100.0 36 ................................. TGCTAAGACTCCCGATGTTGCATTTACAACCATTGG 70887 33 100.0 36 ................................. GGCTTTGGCTTATCGAAGAACTCACGTTTCAACCAG 70956 33 100.0 34 ................................. AATTTTCTTAATCGCATTTCAAAATCCCGAGCAA 71023 33 100.0 35 ................................. CATCTTATCCGGATTAGTGATGTCGAACTGATGTG 71091 33 100.0 36 ................................. GGCAAAGAAGCAAGGCCTGTTATACAACGGTGACAG 71160 33 100.0 35 ................................. GTTGCACCGCGTGTTGGCGGAATTACCGTAGCCCG 71228 33 100.0 36 ................................. TTGACCACCTTGACCTTCTCGACCCGTTTCAGGACG 71297 33 100.0 34 ................................. GCTGTGTTTGTATTTGCGAAAGCATTGACTGCGG 71364 33 100.0 35 ................................. ACCCATAAATGTGTGATGTGTCCACTTCGAAAGAT 71432 33 100.0 36 ................................. CCTTGTCATTGGCGCACCAGGACGTGTGCCATCAAA 71501 33 100.0 35 ................................. TTCGTACAATTCGCGATTGGCTTTAATCCATTTCA 71569 33 100.0 34 ................................. AATCATGATAGTCATCTCTTTGAAAGCAGCCCTG 71636 33 100.0 34 ................................. TTTGACGTATGACATAGGGCTTGCATTGTTTACC 71703 33 100.0 35 ................................. TGATCCCTACCTATATAACAGAGTGGCGTGAAGAG 71771 33 100.0 35 ................................. AAGGAGGGGTTTCTATGCGAAGAGATAAGATTCGC 71839 33 100.0 36 ................................. TGAACATGAGAGCATGGAGCGCGAGAAGATCGCCAC 71908 33 100.0 34 ................................. TTCGCCTCATTCACCTCATCGAACCGAGCCTTAG 71975 33 100.0 35 ................................. CCTCCCGGTTCATGTTGATCTTGGTAAGAAGTTCA 72043 33 100.0 34 ................................. ATCTAATGGTGTTTGTGCATTGTAATCATTGGAA 72110 33 100.0 35 ................................. TTTAATATGTCTTTTAGTAGTTCATGATAGTTTTT 72178 33 100.0 36 ................................. TTGGAGCATAGGGCGTATGTATTCGATCATGGGCAG 72247 33 100.0 35 ................................. CAAAGAGATCCGAAAGATCAAAACTGAAATGCTTG 72315 33 100.0 35 ................................. ACTTTGATGTATTCGCCTGTTGTCTCATTTCGAAC 72383 33 93.9 36 .....................A....A...... CAAGTGAAAAATTACTTGGAGCGTCAACAAATGAAG 72452 33 87.9 36 .........A.....A.....A..A........ AAGTGGTGGGAATTGTTTATAGCCATTGGGGTAGCA 72521 33 81.8 0 .........CA..C.........TA...A.... | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 98.7 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : GAAGTAGGTGTACATATGCTTGTTCTTATAACATATGACGTAAGTACAACAGACAGTGAGGGCAGGAGACGCTTGTCCCGTGTGGCGAAGAAGTGCGTCGATTATGGGCAGCGGGTGCAAAACTCAGTATTTGAATGTATGTTGGATGCCGCTCAATTCAAAAAATTGCAGTTAGAACTCGAATCTATGATCGATAAAAAGACAGACAGCTTGCGTTTCTACAATTTAGGAGACAATTATAAAAGTAAAGTTCGCCATGTAGGAGCTAAAGCTTCTTATGATATGGGAGATACTCTTATTTTGTAGCAGGTGCGAATGTCATGCTCACATGATTTTCCTGGGGGATTCGCACTTTGGAAATTGCTCAAATCGACCTTTTTGTGACCTTTTGGCAACAGTAATGAGTTTATTTTGTATAATGATTAGAATTTATATATTGAGAAATGACGAGTATACGCGTCTCTATTATCATCTGAGATGTTGATACGTTATTTTTCGCT # Right flank : TTATTTGCTACCTATTTTCAAACGGAGATTCACAATAAAAATAAAGTACTATTGGTCTTGTGGCTCAGTTAACCTAGGAGAACACCACGCTACCAACTCAAAAAACCAAGAAGGGAAAAGTAACACTCGCCCATCTTGTTTTTTTTTCTATTGCGGTACCTTGACCCACTTAAAATAAAAACGGCTGAACAGCATTTCTGCTATTCAGCCGCATTCTTTAATTCGCTCGCACTTTGAAGAACGAGATCAACTCTTGCAATTGCTCAGATACCGCTGAGAGTTCATCAGAAGCGTTAACGATGGAAGCCATGGAGGATTCTTGCTCCTCAATGGATTGCTCGATCTGTTTACTGCTGCTAGCCGCTCTGCTGACACTTGAAGATAATTCATCTGCAGTGGCAGACATTTCTTGTGTACTTGCGGATATTTCCTCGGTAGAGCTGGAGATATCTTGGATTTGGTTCGCCACTTTATTCGTTGCTGTAAGAATGTTCTCGAAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //