Array 1 46456-44572 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKC01000010.1 Neisseria meningitidis strain M21261 M21261_CHA4080A56_cleaned_ctg_9981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46455 36 97.2 30 ........G........................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 46389 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 46323 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 46257 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 46191 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 46125 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 46059 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 45993 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 45927 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 45861 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 45795 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 45729 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 45663 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 45597 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 45531 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 45465 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 45399 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 45333 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 45267 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 45201 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 45135 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 45069 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 45003 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 44937 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 44871 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 44805 36 100.0 30 .................................... GATTGAGATTTTCAACGAGCAATGCTTTGA 44739 36 100.0 30 .................................... TGCCAGCCCGGGCGATTTCGAGGCGGTCAA 44673 36 100.0 30 .................................... TAACTAATTAACTTTAGATTTTCAAGAGCT 44607 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 132-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQKC01000110.1 Neisseria meningitidis strain M21261 M21261_CHA4080A56_cleaned_ctg_10477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 132 30 100.0 47 .............................. TTGCGTTGCGTTTTTGGATTCCAGCTTTTGCGGGAATGACGGTCGGT 209 30 96.7 47 ........................G..... CCGCGTTGTGTTGCTGGATTCCCGCCTGCGCGGGAATGACGGCGGTG 286 30 93.3 0 .................T....G....... | ========== ====== ====== ====== ============================== =============================================== ================== 3 30 96.7 48 GGGGTTTCTGTTTTTTCCGATAAATTCCTG # Left flank : CCCATAATCTAAAATCTCGTCATTCCCGCGAAGGCGGGAATCTAGGACGTGGAATCTAAGGAAACTGTTTTATCCGGTAAGTTTCCGTGCCGACGGGTCTGGATTCCCGCTTTTGCGGGAATGACGGCGGTG # Right flank : TGGTTTTTCTATGGATTCAATCATTCCTGATAAATTCCCATAATCTAAAATCTCGTCATTCCCGCGAAGGCGGGAATCTAGGACGTGGAAT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGTTTCTGTTTTTTCCGATAAATTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //