Array 1 495122-496737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040163.1 Salmonella enterica subsp. enterica serovar Infantis strain SBO17 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495122 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 495184 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 495245 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 495306 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 495367 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 495428 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 495489 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 495550 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 495611 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 495672 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 495733 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 495794 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 495855 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 495916 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 495977 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 496038 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 496099 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 496160 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 496222 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 496283 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 496344 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 496405 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 496466 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 496527 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 496588 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 496649 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 496710 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 513020-514978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040163.1 Salmonella enterica subsp. enterica serovar Infantis strain SBO17 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 513020 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 513081 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 513142 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 513203 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 513265 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 513326 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 513387 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 513448 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 513509 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 513570 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 513631 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 513692 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 513753 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 513814 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 513875 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 513936 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 513997 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 514058 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 514119 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 514180 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 514238 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 514299 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 514360 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 514421 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 514482 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 514543 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 514604 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 514665 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 514766 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 514827 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 514888 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 514949 29 93.1 0 A...........T................ | A [514975] ========== ====== ====== ====== ============================= ======================================================================== ================== 32 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //