Array 1 2017522-2017821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2017522 36 88.9 30 ACA..C.............................. AATCTCGCCGGTAACCTTCCCAGCGAATGA 2017588 36 100.0 31 .................................... CGGCAGCAGAACGCACAAAAGCCTTGAACCA 2017655 36 100.0 30 .................................... CGCCGATCAGATGCGTAAAACAACGACTAT 2017721 36 100.0 29 .................................... TACAGCGGTCGTTGGTAATGGCCTCAAAG 2017786 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 97.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCAAAAGAAGTTTATGCCCATTTCGGCTTTCGGAAGGTGTTGATGGCAGGTTCTATCGTCTCGGCAATGTTTACCGCCTCCAATGGCCTGTTTTACCCCACTACACCCTATTTGCTGATGATTGTCGTGCTCTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTGAATGCGCTTGCCTTTTCCGATATAGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCACTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCAAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACGGCACAACACTGATGGAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTATCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTTCCTTAAGGCAAAAAATAGCGAAATTTTATCGTTCGGTATAACGACTTTACAGAAAATTTACATCAAACGTTGCCGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAGGAACGTTTTACCAGCGTTCTGTTACGGCTTGACCGCATTTTCTAATCTGTTACAACAGACGCGCCGCATTCCGGCGTGGCA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2018260-2018427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2018260 36 97.2 30 ...A................................ AGACGCGCCGCATTCCGGCGTGGCAATTCA 2018326 36 100.0 30 .................................... AGCACCGCCAGTGAGCATGAAATTGTTCCA 2018392 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : AGCGGTCGTTGGTAATGGCCTCAAAGGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTATCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTTCCTTAAGGCAAAAAATAGCGAAATTTTATCGTTCGGTATAACGACTTTACAGAAAATTTACATCAAACGTTGCCGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAGGAACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCCTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAAATGCTGTTTTCCATTAAAATAACACCGATAAATTTCGATTTTTTTAACGTGTCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCTACCCTTGAAAAAATATCGAACTTTCAACATTCGGCATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAATTTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGTATTATGAAGTAAGTAAAGATTGAGTATAGGGACGTTTTACCAGCGTTCTGTTACGGCTTGACCACATTTTCTAATCTGTTACAACGTAAAGAAAAATGAGTTACGATTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2018866-2019165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2018866 36 94.4 30 ...A..........A..................... GTAAAGAAAAATGAGTTACGATTATGAATA 2018932 36 100.0 29 .................................... CATCTGCTTCGCTACCAGTTCATCTATTT 2018997 36 97.2 31 .......T............................ TTGGCGCCAGAATAAGCAGCTCGGCAGAATG 2019064 36 100.0 30 .................................... TGTTGTTGTCATAAAAGCAGGCAGTGGCGG 2019130 36 94.4 0 .................................C.G | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 97.2 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CCGCCAGTGAGCATGAAATTGTTCCAGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCCTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAAATGCTGTTTTCCATTAAAATAACACCGATAAATTTCGATTTTTTTAACGTGTCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCTACCCTTGAAAAAATATCGAACTTTCAACATTCGGCATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAATTTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGTATTATGAAGTAAGTAAAGATTGAGTATAGGGACGTTTTACCAGCGTTCT # Right flank : GCACAATCCAAAATCACCCAATCGGGCAACCACTAGCCGCACATTGACAACACATCGAACGGTAGTTAACGGCGTGTGTTTTTCGTGCCATGGGAAATCCGAGTTCCAAAAGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCGGCGATTTTGGAAAGTAAAAAGGGCACGACTGTTTGCAAGGGCGTTCGCGTCAAGTCGGAGTTTGTCCAGCCCGCGAGTTGTGGAGTGAATACATGAAGATAATAAGTTCAGTATCGTTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGGTTTGCATGTCGCGTGCCGCCAGAATGCGATCGTTGCGAAAGCTGCGCATAGCATTGCGTAAGGTGCAAAAGGCGTCAATATAGATTGTTGTTTTGCCGGCTATTCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCACTGTCAACATATTCAATCATAAATTCAAGACCGCCAGTAATG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 2021090-2021522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2021090 36 91.7 30 ..C..AA............................. GGAAGGCGGCTTTTTGTTCAAAGACGTTGC 2021156 36 100.0 31 .................................... TGATATTTTGAACGGGAACATGGAAACTTCC 2021223 36 100.0 29 .................................... GCACTCGAATTGTATTACCAGGACATTAT 2021288 36 100.0 30 .................................... TAAAATCAAAGCCACGCTTTTTGATGGCGA 2021354 36 100.0 31 .................................... CGAGCTTGACCGTAAACGTCCCCCATGTCCA 2021421 36 100.0 30 .................................... GGGGCGCGTAAACTGGACCGACGCGGGCGT 2021487 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CCGTTACGCTTTTGCCGGTGTCTATGTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATCAAAATAACACCGGTAATTTTCGATTTTTTTGACGTATCTTCCACGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCTACCCTTGAAAAAATATCGAACTTTCAACATTCGGTATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGACCCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGGAATTGAAAAATAAAATCAACAAACAGTATCATGAAGGAAGTAAAGATTGAGTATAACGACGTTTTACCGGCGTTCC # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAATTTTTGATTTTTTTGACGTATCTTCCACGTTTTGTCTAAAAATCTAATCATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAAGTGGGCTTACCAATACCGGATCAGCCGGCATGGTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGTGAACCGCCGTTTCGATTTTTTAAGAAAGCTTTCCGTTTATAAATGCTGGTGAATGCGCCGTGCTACCTAACAAGCAGCCCGCTTTGATAAAGTGGGCTTAAGACAGAATGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGGTTTGCTGTTGTCAATTTTTATGCGTGGCTAAAACTGAACGAGCCTGCCCCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 2025958-2026125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2025958 36 83.3 30 ACA..C....................T........C AGTTTGGTAATGGGACAAGGTCTTAGACTA 2026024 36 100.0 30 .................................... AAACTCGTGTCATTCATCTTCTCCTGTAGT 2026090 36 94.4 0 ..........A........................C | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAA # Left flank : CTTCCAACTCTGCCCACTTTTCAAGCCGCTCTTCAAATGTCCTTTTTACTGCCAGTGCAATCATTGAAGTAAGTTTCAATATGGTGCCTCTTGTAACTCTTGCCAAAATTCTCTCTTAAGAAGAAGATATGAAACATTTTTATTATTGTAAATTATTTTTATTATAACTTTAATATTTTTTATTGTTAATGAATAATTTTCTCAACTGTAACGCCGTTTTACGCTTTGCGTCTACAATGGCCGCAGCAAATTTTCTTGCTTGTTTTCTATTTTCTGTTTTTTGTGCAAGCCATGAATTTATCAAATCGCGTGTGCATTCAAGATGATATTCTTTCATCCAATCTGATGAGTACGCATTAGAAATACCGTTTGATACCAATTTGATAATATCGCGTTTGATGTCTTCATCTTCCGCACATTGCCACGTGATGCGGGACATGCTTTGAACGAAAAGGGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CAAGACATTGGAGCTACAAAATGCTCGTTAAGAGAATGATTGCTTTTATATCGTTTGTTTTGCTGTTAGCTCAAACGGGGCAGGCAGGGAAGATAAAGCTGCCTGTCGTTTCCGGTTATTATGTAGAGCAAACGTCGCCGGAAGTTTGCAAATTACCGGACCAAGAATTTTCATTCAACAATCATGTGCTCATGTTTGATGCCGATGATGGCACAATGGGAGAATTAGAGAGCATTTGCAAAGCCAAAAAATATTTTTGACGCCCGATAAGAAATATCACATAACATGGCAATGTGATGATGTTGGGGAAAGATACAACCAATCAATGGAGCTAAAAATCCTGCCACATACGGTTCTAATAGATGGTATTGAATATATGCGTTGTGAAAGAAATCAAGACGGAACGTTATGAGCTAACAAGAGCTTTTTTCAGCTTTTTTGCCTGCTTGTTCTTTTCTTGCATGATCCTTGCATCAATAGCGTCACGGATGAATTTTGCA # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 6 2026757-2027188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2026757 36 100.0 30 .................................... CTTACGTGTCATTGACTTCGAACTGGCAAG 2026823 36 100.0 30 .................................... GATAGCTTCGTTAAGAAGTGACAGCAAATA 2026889 36 100.0 30 .................................... CCTTATGGCGGTAGCTGTCGGCTCTATTTT 2026955 36 100.0 30 .................................... CCTCGGCGATGTGCCGGCGGTTGAAGATGT 2027021 36 100.0 30 .................................... AAACCACGCTCCGTATTGTTATCGCCCGTA 2027087 36 100.0 30 .................................... AGCCTTTAAAATGATTGAACCAACATTCTA 2027153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCGCCGGAAGTTTGCAAATTACCGGACCAAGAATTTTCATTCAACAATCATGTGCTCATGTTTGATGCCGATGATGGCACAATGGGAGAATTAGAGAGCATTTGCAAAGCCAAAAAATATTTTTGACGCCCGATAAGAAATATCACATAACATGGCAATGTGATGATGTTGGGGAAAGATACAACCAATCAATGGAGCTAAAAATCCTGCCACATACGGTTCTAATAGATGGTATTGAATATATGCGTTGTGAAAGAAATCAAGACGGAACGTTATGAGCTAACAAGAGCTTTTTTCAGCTTTTTTGCCTGCTTGTTCTTTTCTTGCATGATCCTTGCATCAATAGCGTCACGGATGAATTTTGCACGACCATGATTGCCGACTAAAGCTTTAATACCATCCAAGTGTTTTTGAGTTAAATATGCCATCACCGGTATTGTCGGCTGTTTATTTTTGGGAGGATTAAGTTTTGCTTCAACCGCATCACGGATGAATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGGCGTATCTTCCACGTTTTCTCTAAAGATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGACCCACCCTTGAAAAAATATCTTACTTTCATCGTTCGATATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATATAATTGAAATATAAAATCAACAAACAGTTTCATGAATGAAGTAAAGATTGACTATAGAGACGTTTTACCAGCGTTCTGTTTCGGCTTGACCGCATTTTCTAATCTGTTACAACAAACCAAAGAAGTCATGGCAAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 7 2027627-2028124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015625.1 Bartonella apis strain BBC0122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2027627 36 97.2 30 ...T................................ AAACCAAAGAAGTCATGGCAAAACTAGGGC 2027693 36 100.0 30 .................................... TGACTGCGACACGATTAACGCCATCAATGC 2027759 36 100.0 30 .................................... TAAGAATTGAATTGATAAGACGTCTGTTCT 2027825 36 100.0 30 .................................... ATGGTCGTACCGGCCTGTTAAAAGAGTGCC 2027891 36 100.0 30 .................................... ATTACACTTGGTGAACCGATGAATTTCTCT 2027957 36 97.2 30 ..........................A......... ATTTGGAGAAAACTCTTGGCATTTGCCTAC 2028023 36 100.0 30 .................................... TTTTGCGGAAAACCTTTGCCGAATGTCGAT 2028089 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTAAAATGATTGAACCAACATTCTAGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGGCGTATCTTCCACGTTTTCTCTAAAGATCTAACAATATTTTCACATAAGCGCACGATCAATTTGCTTGACCCACCCTTGAAAAAATATCTTACTTTCATCGTTCGATATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCAAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATATAATTGAAATATAAAATCAACAAACAGTTTCATGAATGAAGTAAAGATTGACTATAGAGACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACTCCTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCGTTAAAATAACACCAGTTGAGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGACGTTTCCTCGTTCAGGCAAGGAGCATTCGATCTTCCTGACATAAGATTCAAATTGTTCTTTTCCGTTACAGAAACGCAGATAGTTCGAGAACTCGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTGTCTACCGGTAAGCCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATCTTCTCCCCACGCCTCATCAATTTGAACCGAATTGTTTTCCAAAGAAAAAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //