Array 1 5361-6486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQPM010000018.1 Salmonella enterica subsp. enterica strain ULBRA-SA175 NODE_18_length_88347_cov_8.436817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5361 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5422 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5483 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5544 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5605 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5666 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5727 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5788 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5849 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5910 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5971 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6032 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6093 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6154 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6215 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6276 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6337 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6398 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6459 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22745-24341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQPM010000018.1 Salmonella enterica subsp. enterica strain ULBRA-SA175 NODE_18_length_88347_cov_8.436817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22745 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22806 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 22867 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 22928 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 22989 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 23050 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 23111 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 23172 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23233 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23294 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23355 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23416 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23477 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23538 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 23599 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23660 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23721 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23782 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 23885 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23946 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24007 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24068 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24129 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24190 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24251 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24312 29 96.6 0 A............................ | A [24338] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //