Array 1 22640-23994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALI010000019.1 Neisseria meningitidis strain 108152 NODE_19_length_40755_cov_35.862514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22640 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22706 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22772 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22838 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22904 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22970 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23036 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23102 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23168 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23234 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23300 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23366 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23432 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23498 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23564 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23629 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23695 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23761 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23827 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23893 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23959 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //