Array 1 127001-126417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLQ01000142.1 Bacteroides fragilis strain 321_BFRA 774_128171_2316969_670+,...,530_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 127000 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 126923 47 100.0 30 ............................................... ATATTTCCGGAGATCCATATCCTCAAATTT 126846 47 100.0 30 ............................................... GCTTCAGGGCTTCCGTATCTCTAAAGAAAT 126769 47 100.0 30 ............................................... TAGCTCCTTGCAGGTTGGAAACACTTCCGC 126692 47 100.0 30 ............................................... TTCCCGGACGTATCGACGAACGAAAGAGAA 126615 47 100.0 29 ............................................... ATGTTGGCCAGCTGTACGAGCGGCAATTT 126539 47 100.0 29 ............................................... ATTACTGTAAGGAGAAGAGACAGGGACTA 126463 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : AGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 25338-26654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLQ01000105.1 Bacteroides fragilis strain 321_BFRA 737_46266_751890_440_,77+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25338 29 100.0 34 ............................. TGGAAGACTATCTTAATAGTTTCATTGATACCTA 25401 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 25465 29 100.0 37 ............................. AAAGTATTCAAAGTAGTTCTGGAACTCCGGGATATAA 25531 29 100.0 35 ............................. TGCAGAAAAGCTGTTCTTTAGTTTATTTATACACT 25595 29 100.0 37 ............................. TACAGGGGTTGACCGTTGTTGCACACCCGTTTGCTGA 25661 29 100.0 36 ............................. TAAGGTACGATTAATTCTTTGCAACGACACAAAGGT 25726 29 100.0 34 ............................. ATAGTTGTTCTTTTGTAAAATGTTTCATTATTGT 25789 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 25854 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 25919 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 25982 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 26045 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 26111 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 26176 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 26239 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 26304 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 26367 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 26430 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 26495 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 26559 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 26625 29 93.1 0 .........................G.C. | A [26649] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.3 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACGTTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCATGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //