Array 1 168-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIU01000029.1 Pseudaminobacter salicylatoxidans KCT001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167 36 94.4 30 ..C.............................G... GCGCTTCGGCCAGCCCCTCGATCTTCAGCA 101 36 100.0 30 .................................... TGCCCCCATCCTGTCCCCCACCCCCAATGA 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : CCCATCGCCCTTTCATCGAGGGTGGGTCGCGGTACAGTGTTCCACCTCGAGCTTCTGCCGACCGAAACGGTTTCGATCGAGCCGCGCCCTACAAGCATGGGGCCGGAACTGCCTCGCGGCTACGGCCTGTTCGGAACGAGGGTGCTTCTGGTCGAAGACGACCCGGAAGTCCGTCAGGCTATGACCGCGCTTCTGGAGCGCTGGCAATGCTCGGTGCGTGCGGCCGCTTCGACGGCAGAAACCTTGCGTGCGCTCGGCGACACCGCCTGGGTGCCCGACATCGTGATTGCCGACCAGCATTTGCAAGGGGGCGATCACGGCAGCGTCACCATCTCGGAAGTCCGTTCCCATCTGCGACGCGACGTCCCCGCCCTGATCGTCACCGCCGACATGACCGACGAGGTCGCCCGAATTGCACAGAAGATTGGCGTGGAACTGATGCGCAAACCGCTAAAGCCCGCGGAACTGCGCGCATTGCTGGCACATCTGCTCGCCTGAAC # Right flank : C # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 34874-34563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIU01000028.1 Pseudaminobacter salicylatoxidans KCT001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 34873 36 100.0 29 .................................... CTGCGCAGGCGGAAGCGTCGTGCAGTTGC 34808 36 100.0 41 .................................... CGCTCTATCAGCTGGCGGCTTGCGACTAGCCCCGCCATCCA 34731 36 100.0 30 .................................... TCCAGTCGCCTTGTCTTGGCGGGCGCTGCC 34665 36 100.0 31 .................................... AAGCGCCGTCGGCTGGCCGATGACCTCGCCG 34598 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 33 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : ACTGC # Right flank : AGTTGGATGTCGATCTTCCTGATCTCAAAGGGAAAATCGGCATCCGCAGCGCTGCAAAAATGGTCTTTGAAAACGAATCGTGGTGCATTCATTACGGTTTTTCCCAAAGCCCTAAAATCCCGATTGCTCACGGAACATATCCGGATTGTCGAGCTTGGCGACCTCGATCACGGCCTGCGTGCGGCTGTAGACATTGAGCTTGCGCAGGATCTCGGAAACATGGGCCTTCACCGTCGTCTCGCCGACCTGCAGTTCGAAGGCGATCTGCTTGTTGAGCAGGCCCTGCCGCAACATCTGCAGCACGCGTAGCTGCTGCGGCGTCAGTGTCGCGAGCCGGCGCACCATTTCCGCGCGGTCGGCGCTTTCAGCGTCAAGCGTCGCGGGCTTGTAGGTCTCGGGCACGTAGATCGCGCCATCCATCACGGTACGAATCGCTTGGGCCAGGTCGCTCTTGCGCACAGATTTCGGGATAAACCCCGCCGCACCGTAGGAAAGTGCCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3259-3559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIU01000042.1 Pseudaminobacter salicylatoxidans KCT001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3259 36 97.2 30 ...A................................ CGAAGGCAAGTCGATCGGGCAGCTCGACCT 3325 36 100.0 30 .................................... CTTCGGGCGATCAGGCACAGGACACCGCAA 3391 36 100.0 31 .................................... ACGCGACGATATCCACCATAGGCATCTGGCC 3458 36 100.0 30 .................................... ATTGTGCGCACACTTTCCGGAAGATCACGA 3524 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 98.9 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : GACGGTGGCCACCAGCTCCACTTTCGCCGCCGCGCGCAAACAGGAGGCGGCAGTGCCGCCATAGGCACGCATGAGCCCGCCACTGCCCAGCAATATGCCCCCGAACCAGCGCGTGACCAGAACCGCCACGCCATCCAGCGACTGCCCGTCGATTGCCTGCAGGATCGGCTTGCCTGCGGTGCCGCCGGGCTCGCCGTCGTCGTTGAAGCGATAGTTCTGGCCCATGCGCCACGCCCAGCAATTGTGGGTCGCGCCGGGATCAGAATGCGCGGCGATGAATTCCCGCGCGGCCTGTTCGCTCGCGACAGGCCCGGCCACCGCATGGAAGCGGCTTTTCCTGATCTCCTGGCTGAAGGTCTCGACGTTTTCGAGGCTGAACATCTTTCGCGTCCTTTTACCCGGACGTCCTAACCCCCATAAGCCGCAGAGCCAAGTGCCTGCACGCATGCCAGCAGAAAGTGGCAGCTCGCGGCGGGCCGTAGCCTGTGATGCGAACAATG # Right flank : GCTGRCGAGTTGCCGAGCGAAGAGGGGCGCTGTTGGCGGCTGGACCGCGTTTTCTGAAACTGCTAAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 896-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIU01000053.1 Pseudaminobacter salicylatoxidans KCT001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 895 36 97.2 30 T................................... TGCAGTCATTGAAGACTCAGTACTTAGGAG T,C [865,892] 827 36 100.0 30 .................................... TGGAAAACAAGCGCATAGCCCGCGAAATAT 761 36 100.0 29 .................................... TCTCACTACACACATCGCCGACCTYTTTG 696 36 100.0 30 .................................... AAGTGGATCAGTGGCGATCACTTCAGCACT 630 36 100.0 30 .................................... TCGGCCAATATCGCAGGACTTCATCCATCA 564 36 100.0 30 .................................... CCACGCACAATGCGCTCGATCTGCTCGCTG 498 36 100.0 30 .................................... CGGCCCACCGTTCGACCCGTCCGTCGCCCT 432 36 100.0 30 .................................... TACGGCGCTCATGCGCACGCACCTTAATCA 366 36 100.0 30 .................................... CGCAGCCCACGCGAATTCGTCTCGATAGAT 300 36 100.0 30 .................................... GGACCCCGCCGATAGAGCAGATGATCGACC 234 36 100.0 30 .................................... GGCTGATAGCGCATGTGTTTGTCCTCTGTC 168 36 100.0 30 .................................... TGACGGCGGGGCAAAGCTGCACCAGCCGCC 102 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : | # Right flank : TAGAAGCGCACGGTGCAGTGCCCCGCCATCCAGTTGCGGSCTGGACCGCGTTTTCTGAACTGCGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 1-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIU01000009.1 Pseudaminobacter salicylatoxidans KCT001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 31 83.3 30 -----..............................T CGCCGAGTTCATCGGCGAATGGGGCCTGCG 62 36 100.0 29 .................................... TGGACTCGTTGTTGTCGATCATGCTCGCA 127 36 100.0 29 .................................... CCTGGTAGATGCTCTGCACGTGCCGGGTC 192 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCA # Left flank : | # Right flank : CGATGACCGTCGATCTTCCTGATTTCAAAGGAAAAATCGACGGTCACGGCGCAGAAAAAGCGCCTCATGGCCCTAGAACAGGGCAAGCTGATCAGGGTTTTTCTTTTGCCTTCGGCGGGCCTGATCGGAAAAGCGGACGATATTTTCATACTGCCTGTCCGTGAACTGAAAGACATAGATGTCACCCCATTCCGGCAGGTGTGATTCGATCTTGCGCAGGTAAGTCTCGAACTGCTCCTTGCCGCTGCAGAAACGCAGATAATTGGAAAGCTGGCTCATTTCGAAGCCCATGTCGAGCAGATACTGACGGAATTTCGTGGCCGCCTTGCGCTGCTTTTTCGTCTCCACCGGCAGGTCGAACGTCACCAAAATCCACATCAGCCTGTATCCGCTGAGATGAGCGGGCCCCATATTTGCTTTGGCTGGCGCCGTCATGGCGCCGGTGCCCCAAGTCCCAGAAGGGCAAGCGGCGGCGGCATGCCAGGCAGTTCCAGCGCGGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //