Array 1 6485-9952 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPT01000013.1 Streptococcus cristatus strain BCC41 D8791_contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6485 36 100.0 30 .................................... TCCAATTTTCACGCTTTAAGCGTTTGTTTT 6551 36 100.0 31 .................................... CTGAGCTCAGGGCGTTACTCACGCTATAATT 6618 36 100.0 30 .................................... CTGTTATTATAGCGTAGGGTCCCTAGTGAT 6684 36 100.0 30 .................................... TGAACTAGTTGAGGGCTCTTTCCAGGAGCA 6750 36 100.0 30 .................................... TTACTCGTGAGAAGCCTTTAAGACGAGAAG 6816 36 100.0 30 .................................... GGGTAGCCAAAAAAGGAGGCAGAAATCAAA 6882 36 100.0 30 .................................... TACTTTTTAATTTCGCTTTTAGTCCATGTC 6948 36 100.0 30 .................................... TAATCTGAAAGCAAAAGATACTGCGCTTGA 7014 36 100.0 30 .................................... GACAGGCCGCAAAGAGCGGGAGTTCATGGA 7080 36 100.0 30 .................................... CGCGGTCTGCTGCTTCGTCGTCACCCGTCA 7146 36 100.0 30 .................................... TGATTGTGAGCAATACGTCCCAATGTTAGA 7212 36 100.0 30 .................................... TTTTAACGTTAGATAATGTGCAGTCAATCA 7278 36 100.0 30 .................................... GGACGGATATGCTAAATACTGCGTTTGGTT 7344 36 100.0 30 .................................... CATCAAAATCAGGAAGTACAAGCCAAGAAA 7410 36 100.0 28 .................................... TCCACCTGGATTCGGGTTATCGTCCAAG 7474 36 100.0 30 .................................... GACTGCCCGTATTTAGCCAAACTCACACAA 7540 36 100.0 30 .................................... TAGCATTTAGACGAGTACAGGTACTACCAT 7606 36 100.0 30 .................................... AAGCAAAGATTTCTCTGACAGCAACCGTAT 7672 36 100.0 30 .................................... AAACGAGCCAAATGCCAAAGTTGATGTTAA 7738 36 100.0 30 .................................... TCTGGAAGCGAAGCTGTCAGCTCTGACTCT 7804 36 100.0 30 .................................... CCGACTCAGCAACATGAAGCGGTATGACAA 7870 36 100.0 30 .................................... CTAGCCAACGCTTGATAGTTAGAGGGGAAT 7936 36 100.0 30 .................................... TTTGGGTTCGTATTTATCCATCAGGAGATA 8002 36 100.0 30 .................................... TTTCATCCTTGCTCCTTCTCATTTCGTTTT 8068 36 100.0 30 .................................... TTCTTTGTACGATTATGATTATGGATCGGC 8134 36 100.0 30 .................................... GGCAATTTTAAAAATCTTGCAGACAATTGA 8200 36 100.0 30 .................................... CGACCTCAACCATCGTTGAGTTTTTCGCCT 8266 36 100.0 30 .................................... CTGTTCAAGCGTACCCGCTGCCGCTTCTGG 8332 36 100.0 30 .................................... TCCAATAACTCAGATGATTGGTTTTCTTCC 8398 36 100.0 30 .................................... CAAAAGTTCATCTTTAGCCAAATAGAGGGT 8464 36 100.0 30 .................................... CCAAGCAGCAATAGTCAACTTCAAATACCA 8530 36 100.0 30 .................................... CAGCATTATCAAGATAGCTGCTGAAGATTG 8596 36 100.0 30 .................................... AAGCAAATATTCGAGAATTAATGTCTAATA 8662 36 100.0 30 .................................... CATCACACCCGACCTACAACCGAAATGAAA 8728 36 100.0 30 .................................... TAATCAGGCGGTTCAACAGGCTAAGGATGC 8794 36 100.0 30 .................................... GACCCGCTCTCAACCTTGGCAAGTTTCCAT 8860 36 100.0 30 .................................... CGGCCCAGCAAATAGCCAGAATAAAGGTGA 8926 36 100.0 30 .................................... CCTTGAAAAAAACATTAAGGATAGTTTGGT 8992 36 100.0 31 .................................... CAGTGAGCGCTAGTCATACATCTATCTTGGT 9059 36 100.0 30 .................................... AGCGTTGTTGGCAAGGTTTTTATTTGTTGT 9125 36 100.0 30 .................................... CGAAAATAAAGATGAATTCTTTACCAAATT 9191 36 100.0 30 .................................... GCAATTCGGATGAGCCAACCTCAAAATAGG 9257 36 100.0 30 .................................... TCAGGATGCTGAACCGTCCCTTGATGAGAG 9323 36 100.0 30 .................................... ACAATTAAGAAGGTCGAAGGGAAAGATGAC 9389 36 100.0 30 .................................... CGACTTACTTTCTGCTATATTCATAAAATT 9455 36 100.0 30 .................................... CCAACTGGTGGCGGTACCGGTGTTGAACGT 9521 36 100.0 30 .................................... CCAAAATTTCAAATCGTGCCATTAAAGATT 9587 36 100.0 30 .................................... AAGTTCGGAATAGAGAGTCCACATTGTTAT 9653 36 100.0 30 .................................... TCTGGAGTGCGAGTATAATTTCTTAGTTCG 9719 36 100.0 30 .................................... TCTCAAGTCAGCCAAGACTTTCATCACATC 9785 36 100.0 30 .................................... GCCAGTCGCTGGCTTTTTGTTTTTGTGGAA 9851 36 100.0 30 .................................... ATCTTAAAAAGGAGAATGATTATGGCACAA 9917 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GTCAACTCAATGACAAACCGGAAGTCAAGTCCATGATTGAAAAGTTGGTAGCTACGATTACAGAATTACTGGCATTTGAGTGTTTGGAAAACGAATTGGACTTGGAATACGATGAAATCACCATTCTAGAGTTGATCGATGCGCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTATCCAGGTTTTCAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGATCGCCTATCTATCAAAGGATGAATTAGTAAATATGATAGAGTATATCCAACTCAATCAACTAAGGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAATCCTGAAAATATGATATAATAAGAGTAACAATTGGAATCGGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTAAGAAAAAATTTTCTACGAG # Right flank : CGAAGCGCCCCAGATTCAAATAAATCCGATTCTTGAAAAGAGAGTCGGATTTTAATTTTATTCGACTTCGATTTTTGTGCTATAACTTTTTTGTAATATCTGCTTGTATTTTCTTGATATTCTGCTATAATGGTATAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCCAGTCTTCTAAGTGGAGCAGCAACTACCTTGCAAGTGTTTGCTTTGGTCTTGGTTTTTTCTATTCCTTTGGGAATTATGCTGGCATTTTCAATGCAAATTCGCTTGAAGCCCCTGCAATGGCTGCTTCATATTTACATTTGGATCATGCGCGGGACGCCGCTTTTATTGCAGTTAATCTTCATTTACTATGTTTTGCCAAGTATCGGCATTCGGCTGGATCGGATTCCTGCAGCGATTATTGCCTTTACATTAAACTACGCGGCTTATTTTGCGGAGATCTTCCGCGGAGGCATTTCTTCCATTCCGACTGGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //