Array 1 28426-27349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000030.1 Meiothermus sp. CFH 77666 Scaffold30_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 28425 35 100.0 36 ................................... TCGGGAATGGTGGATGCTCGTGGGCGCAACATTACA 28354 35 100.0 41 ................................... TTCCATGTTTTACCTCTGCCCTGGATTACCCGCCAGGGCTA 28278 35 100.0 44 ................................... CCCAACCAGCAGGCGAACGACATCCCCGCACACGGGGGTCTCTA 28199 35 100.0 37 ................................... GCCAAAGAGGCTGCCCCGATGATTTCCTCGTTCTGGG 28127 35 100.0 41 ................................... ATGTCCTCGAAGTAGTCAAGAACGCCGTCCTTGACCACCCG 28051 35 100.0 39 ................................... CCTGGAAAAGGCCCTGGGGGGAATGGTTACATACACCAT 27977 35 100.0 39 ................................... AGAACGGGGCAGCCAAAGAGGCTGCCCCGATGATTTCCT 27903 35 100.0 38 ................................... ACCTTGTAGAAAAAAGACGTGGTGTGCAGCACGTAGAC 27830 35 100.0 40 ................................... CCCCGGAGCTGTGGGCCCCATACGGGGCCGAACAACTCCG 27755 35 100.0 39 ................................... TCATCCTCCACCACGAGGGTGGCGGAGGCCCCTGCCAAC 27681 35 100.0 38 ................................... TTCGTGGGGAAAGACTATGAACGGGTGAGGGCCCTGAT 27608 35 100.0 38 ................................... GATGGCCTCGCGGATCATTCCCAGAGCTTCTTCCTTGG 27535 35 100.0 41 ................................... CAAAGTATTCATCAAAGGCGGTTTCTACCGCCTTGAGTCTT 27459 35 100.0 41 ................................... TGGCCGACTACGGTGTATCGCACCCAGCCACCGTTGGGCAG 27383 35 97.1 0 .............................C..... | ========== ====== ====== ====== =================================== ============================================ ================== 15 35 99.8 40 GTCGCAAAAAAATAGCCCCGTAAGGGGATTGCAAC # Left flank : CTTTTGCAAAAAAAGGCCGATCTCACCCAGGATAGCGTCCGCATCTACCCCATTGGGGGCACGGTAGAGGTGCTGGGCCAGGGCCGCCTCACCGAAGACCCCGACTACCTGATTCTCTAAAACCCCCGTTACACCTGCCGTTACCCCACTTTCACAGGCCAAAAACCCCATCGCAAAGCCACGCCCATTTCTGCTAACACACCACAAATGCCCTCCCCAACGCTGTGGAAGCGCTTTGGCCAAACGACCCATTATGTTTTGCGCAAAATGCTATACTGATGGTGTTGGAATTTTCCAACGCGCTTCTTGACAGCAAGTTGTGGCGATGCTTATCGCACAGTACCGCCACAAAAAATCCAAAAGTGCAACTTTGTAAGTATCCATCGCAACAAACCGCACTTTTTGGAGAGTTATCCACAGGCAACCTGTGGATAACTGGTAGTTCTCATAAATACCCCCCTCGAGAGCCCTTTACAGAACGGCACTTAACGGGGTATGCT # Right flank : CTCACGGCTATTCGTGGTGCGGGTGCGCGGCGACTCCATGCAGGGCTACGCCGATGATGGCACCCTGGTCATCTGCTACCGCGACGGCCTGCCTGAGCGCGGCAAGGTAGCGGCGGTGTGGTTGGCGGGCGACGGTGTGGTGATCAAGCGCTATCTGGGGGTGGAAAACGGCTTACTACTGCTGGGCAACAATAACGGGGCTTACCGGGCCGCATTCGAGGGTTCAGAGGGCAGCACCGTGGTAGGGGTGGCGATTGGTCGGTTTTTGAGGGGGTAGGCTACAACGATTTTTTGATTTGCTTCAAAAATTGTGCTGGAGTGAGGATTTTTAGACGCTTATGCTTGACCGAAACCATATGCTCGTCTCCACTTACCATGTATTGTGCGCGTGCTTCTATAGCCAAGTCGAGCAGTGGGCTGTCATCGTCGTCTTTGGAAAGGCCGCGCCTTTGTTTGGGTTTTATCACAAGGCAGGCTTTGCGTATTTCCGCTATCAGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAAAAATAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 119-2777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000032.1 Meiothermus sp. CFH 77666 Scaffold32_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119 29 79.3 32 AA.AG..TG.................... TCGCAAAACTGGTTTTGCTGAGCAACGAAAAC 180 29 100.0 33 ............................. CGTAGTTTTGGGACTGCGCAGCCAAACCATGGC 242 29 100.0 32 ............................. AGTTCATCGTTACCTCCTGGGACTTCAACTGT 303 29 100.0 32 ............................. TATACCTGGTGGCGGACAGCGCGCCGAAAGCG 364 29 100.0 33 ............................. AGGAATTGGCGCAAAACCTCGCTCGCTTAGGGC 426 29 100.0 32 ............................. ACTAATCCAGCACGTAAAAACTCACTAACCAT 487 29 100.0 33 ............................. CTGCACTGCGGTGGCCGAGCCAGGGGTGCGTAC 549 29 100.0 32 ............................. TACGAGACTCGCAAGACCCATGAAGAGGTCAC 610 29 100.0 32 ............................. ATAGTCTGTCATTTTGCAAGATACTAGTTTCC 671 29 100.0 31 ............................. CCCAACAAAACAGCAGCCTCAACTTCAACAG 731 29 100.0 32 ............................. ACATGTCGGCACACCTGGTTGGTAGTAAACGA 792 29 100.0 32 ............................. TCTCGGGGGCCAGCCAGTGGATGATGGGCCAC 853 29 100.0 32 ............................. GAGATAGCCATGACCTATGAGGAATATCAGGC 914 29 100.0 32 ............................. TTTCCCCTATGCGCGTGGGGGTGAGTCGGCTC 975 29 100.0 32 ............................. GCAGCCCTGCGCGTCCCGCTGAAGGCGCTCGA 1036 29 100.0 32 ............................. CGCTCAATCGGAATGACACGGGCGATGATTTC 1097 29 100.0 32 ............................. GTCTACCAGTACGAGACCATGCCGGTTCCCGC 1158 29 100.0 33 ............................. AGTGTGCTGTTCAGGGCCAGGAAAAGCGCCCAC 1220 29 100.0 32 ............................. TCGTGTTCGAGGTAGTTGAAAATATCGAGCAC 1281 29 100.0 32 ............................. CCGACCCCTACACCTTCGGCGATTTCCTGGTG 1342 29 100.0 32 ............................. GAGATCGAACAGGCCCTGGGCGAGCGCAGCGC 1403 29 100.0 32 ............................. ATGCGGGTTGGTGTTGTACACCTCCAGCACAA 1464 29 100.0 33 ............................. GAGGAATGGTTATGGCAAAGAGGGAAAGGACAC 1526 29 100.0 32 ............................. CCGGACGCCGTTGGCGGGGTAGTCTCAGTTTT 1587 29 100.0 32 ............................. GCCGCCATCCATGACCTGGATGCCCTGATTCG 1648 29 100.0 32 ............................. CTACAAGCGATTGTTCAGGTTCAGAGGCTGGC 1709 29 96.6 32 ..........T.................. TCGGCCCGCTTGGCAAAGAAGTTGGCATAGGC 1770 29 100.0 33 ............................. ACCACAATACCCCGCCCCACATCCTGGAACAAC 1832 29 100.0 32 ............................. GGGACAGTTAGTCGAAAAGTGGCATATAAACC 1893 29 100.0 32 ............................. CGTCGGGCATTACCCAGGGTGGGATGGGGCAC 1954 29 100.0 32 ............................. CGCTTACGCTCTCAAGAGGCTGGACATCGCCG 2015 29 100.0 32 ............................. GAACCTCGCACCCGTACACGTCCATCAGTCCA 2076 29 100.0 32 ............................. GTGCCTTTATCTCTGAGTTATAAGTTGGCATC 2137 29 100.0 31 ............................. AGCTGGCCGTGCTGATTCAGCAAGACCAGTC 2197 29 100.0 32 ............................. CACTGCACCAAGCATTTTAGAACCTAGACCTG 2258 29 100.0 33 ............................. GAGCAGTCGGCGTTGCTCGACTCACCCCCACAC 2320 29 96.6 32 ............................A GCGCTGGCAGAAGCTCCACCTGTTCCGGCGGC 2381 29 96.6 33 ............................A GTTGCAATAAAGCCCATCCAGTTTTTTGACGTT 2443 29 100.0 32 ............................. GCCGGAGATTCCTACGGCGCTCAGATGCGACA 2504 29 100.0 32 ............................. ACGCCGTTCTTGAGCTACGACTCAAGCGGATT 2565 29 100.0 32 ............................. ACCCAATAGGGCGTGCTGGACTGATAGAGTTG 2626 29 100.0 33 ............................. CTCCAACCGTGCTGGTTGAGGTACAGGTTCAAC 2688 29 100.0 32 ............................. CCGACGGCCTATGTCATCGTGAGCCGCTCCAC 2749 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.3 32 GTATTCCCCACACACGCGGGGATGAACCG # Left flank : TACTTACGAGATGTAATCCTGAGCCTCTTGCACCTCAAAAAGTGGCCGGTGTTGCGCTCGGTTAGAAAGTTCTCGGCTAATCCCTATCCTCTACTCAAGCTAATCCGAGGGTTGTGATA # Right flank : GGAACTGCGCGATGGGTGCTGGTGAGCCGGTGGGGTATTCTCCAAAGCCCGGGGCTCCGGGTCGAGCACATCGAGCTGCGGCGTAAAGTCCACCCGGCGGGCCAGTCCGACAAACGGCTTGCCCCGGATGCCGCGCAGCTCGGGCAGGTTGTGTTGCAGGCTGATGGTGCGGTGAGTCCAGAAACCGGGTAGCCAGTCGCGCATGAGGGCCTCGACCGTGATAGTGGTTCCGTACTCGTCTACCACTGTGTCGTTGCTGGCCCGCACCACCACCACGCCAGGGCGCACCTGCCGGAGTTGCAGCAGGGCGCGGCGTGTGCTGGGTTGGGTGCTGCGGTGCAGAGAAAAATCCCCCTCGAGGTGCCTTGCGGCGTTCCCCAAGGGGGATGTCTAACTAGATTATAGCACAATCAATCTTCGTATGTGGCCAGTTCTTCCGGCGTAGGTGGCTCGAACTTGCGCGGGCCTTTGGAGGAGCTCCGGTATTCACCGCTCCCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84077-85570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000015.1 Meiothermus sp. CFH 77666 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84077 29 100.0 32 ............................. GCTATATTGACCGCATAGGGTTTGCGCATGAC 84138 29 100.0 33 ............................. GCCACTCACGCCGCGTGAGTGGCTAGAGATTTA 84200 29 100.0 32 ............................. AGGTGTCTGGAGGGCGAGGCCGTGAGGCGAGC 84261 29 100.0 32 ............................. TCCGCGTGCCGCGCCGGGCAAATCCCCGGTGC 84322 29 100.0 32 ............................. ATTGGGCCGGGGGTGGGACCACGGCGGTACGT 84383 29 100.0 32 ............................. CCTGCGCCAACCCCCAGAACACCATCGCCGCC 84444 29 100.0 32 ............................. CCCGTCGCAGCGGTCAGGTGGATGTGGAGGCA 84505 29 100.0 32 ............................. AACGCCTGGCTGCGCTCGAGGCGGAGATTGCG 84566 29 100.0 32 ............................. TTGCTGAGCTATCACCACCACCGCCAGGTGAT 84627 29 100.0 32 ............................. GCAATCAGCGCGGCCATCACCTGGTCGCGGGT 84688 29 96.6 32 ............................A GCTACAGCGAGCCGGTATGCTGGGGAACTTGC 84749 29 100.0 32 ............................. CGTTGGCTGCTTGTTGGCTTTTGCTTGCCAGC 84810 29 100.0 32 ............................. CCGGTGGCGCGGTTGATGTCGAGGGCCTTGGC 84871 29 100.0 32 ............................. GGGCCCTAGGTGTATTTCCCGGTAGCCACGTC 84932 29 100.0 32 ............................. TGCGCTTGCTAGCTGCAATAGCGTCTTCAGAC 84993 29 100.0 32 ............................. AATCCGACGCCGCCTACCGCGAGCGCTGCCGC 85054 29 100.0 32 ............................. TGCATCTGGTAGCCCGCTACGGCCCGGGGTAC 85115 29 100.0 32 ............................. TAAACGTCATCACTGGCTACGCACCTATTCCA 85176 29 100.0 32 ............................. GCCGAGCGCCGGGCGTTTATCGAGGCCGCGGT 85237 29 100.0 32 ............................. CCTGGAGGTCGTCAACGACGTCCTGCGGGTAC 85298 29 100.0 32 ............................. ACAAACTAAGGGGAATCGGATGACCGAACCTC 85359 29 100.0 32 ............................. TTCAGCGGCTATCCCGCCGAGTTCATTTTGGC 85420 29 100.0 32 ............................. CTGCCAGGTAGTGCCAGTTGGCGCAGGTTCAC 85481 29 100.0 32 ............................. ACAGCGGTCAGTCCTGCGCTCGCGTTGTATGC 85542 29 86.2 0 ........................GGTA. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTATTCCCCACACACGCGGGGATGAACCG # Left flank : GATCCGGCCCTACCGGGCGAACTTTGGGATCCGGAAGGCAGCGTACCAGGGGGCACAGCTTACGGTTCAGAAGAACAAGACTGAGCTATGGTGGTGATTGTGCTCGAAAACGTACCCAAGCGTTTGCGTGGAGAGCTAAGCAGGTGGATGCTCGAGGTTAGCACGGGAGTTTTTGTGGGCAGTTTGTCGGCTCTGGTGCGCGACCTTCTGTGGCAAAAATGCGTAGAGAAGAAAACCGCAGGTCGGGTATGCATGATGTACCGCTACAACAACGAACAGGGTTTTGTGGTACGGACGCACGGCGACACCACCCGCAAACTGGTAGACTTTGAGGGCCTAACACTGGTCGCAGTACAAAATGCCGAATGGCAGCGCATCCATGCCAAACGGAAAAAGTCTAAGGCGACCGAGAACCTTGAAAAAGATAATCCCAACCTATCAGCTCGGGATTCGGACACTTCAGACGGGGTGAGTGGCTGAATTTGTTGTTAGAATCAAGT # Right flank : TAAGGTGAGATTATCCCTGGGGGTAGTTGAAAGGGAGGCCCCTGTCAGCGCAGATTACGCTGTGTGAAAACAGAAAGACCTCCCATCGAAAGGTTAGCTTGTCCGATTGAAGGATGCAAACTACAAGGTAAGCAAGGCCAGGGCAATCTGAGGGTACGCAAGGTGTACGGGAAGGATGAGATACGGTATCTACGCTGCCGGAGCTGTGGACGGGAGTTCAGCGAAAGGAAGGGAACCGCCTTGTGGAATAGCAAGCTACCCGAAAGCAAGGCTATCGCCATAGCCGAGCAGCTAAGCGAGGGTTCAAGCAAGGCCGCCACCGCCCGATTGGTCAAGGTGAGCCTTGAAAGCATCGCTCGGTTGGAGCGGTTGGTGGGTGAGCATGGCCGGCTATTCCATGAGCAACAGGTACAGGGTTTGACCTGCACCGCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83763-83501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000007.1 Meiothermus sp. CFH 77666 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 83762 35 100.0 42 ................................... CTGTAGAGCGTGGCGGGGGCAAAGCCCTGATCCCTGGATCCC 83685 35 100.0 40 ................................... CCCTCTTCAAATCCAATCCACTAAAAATCCTGTAGGAAAG 83610 35 100.0 40 ................................... GAACCCTCTAACAGCAGGAGCGCTACCCCGAACCCTTACA 83535 35 82.9 0 ..T.....C...........T..........GTC. | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 95.7 41 GTCGCAAAAAAATAGCCCCGCAAGGGGATTGCAAC # Left flank : CCTCGAGTTTCTGGACAAAGAGGAACTCGGCTTCTGGGAGGTCAACGGCTACCACCGCCGGGGCGACCCCTGGAAAGAAGAGCGCTTTAGCGACTAGCCCGCCCCAAGCCAGGCCAAAGCCGCCCTGTTACAAGTTGCGTTGCGTGCAATAAGCCCAACAAAAATGCTTTCGCAAACGCACCTTTCGCCACGGTTAGTAAGCGGAAAATGCCCTTCCAAACGGCATAAAAGCGCTTCCAAAATTTGACCCATTATGTTTTGCGCAAAATGCTATACTATAGGTGTTGGAAGTTTCCAACGCGCTTCTTGACAGCAAGTTTTGGCGATGCTTATCGCAAAGCACCGCCACAAAAAATCCAAAAGTGCAACTTTGTAAGTATCCATCGCAACAAACCGCACTTTTTGGAGAGTTATCCACAGGCAACCTGTGGATAACTGGTAGTTCTCATAAATACCCCCCTCGAGAGCCCTTTACAGAACGGCACTTAACGGGGTATGCT # Right flank : GAAGTTTGCCTGACAACGGGCTTTGTGGTGGCCCTTGCCGGGGTCTCGGAGAAAAGCCAAAGTCCATATAAAATGCCCGTGTGGAGTGGACAACCTGGCTCATCTTGCTGCTGGCCTATTTGTTCGGCGCGATTCCTGCGGGCGCCTGGGTGGCCCGTTACTACGGCGTGGATATTCAGAAGGTGGGCTCGGGGAATACCGGGGCTACCAACATTCTGCGCACCCTGGGGGCAGGCCCGGCAGTCTTGGTAGCTGCGTTCGACGTGTTCAAGGGGGGTATTGCGGTTTTGCTGGCCCGCTTGTTCGGCATCGAGGACTTTTTGCTGGGGGGGGTGGCCCTGGCTGCGGTGCTGGGCCACAACTACTCGGTGTTTTTGCGCTTTACGGGGGGTAAAGGGGTGGCGACCAGCTTTGGCACCCTGCTGTTCCTTGATCCCCTGGTAGCCGTGCTGGCCTTTCCGGTGGGCATACTGACCATGTGGCTCACCCGGTTTGTATCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAAAAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 8849-3185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000013.1 Meiothermus sp. CFH 77666 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8848 37 100.0 36 ..................................... AAATCATCGCAGCGGCGCTCGAGCATGAGCTTGAGC 8775 37 100.0 36 ..................................... CCAGATTGGCAAGAATGTACAGCATGGTTGCTGTTG 8702 37 100.0 35 ..................................... GCTGGGCGGAGTTCTTTGCTAGGCCCAGCGCGCAA 8630 37 100.0 34 ..................................... CCACCTGCGTGCCAAGGGATTCCAGCGCATCTGC 8559 37 100.0 34 ..................................... ATTCGTACACCACCCTCTTGACGAATGTGTCCGT 8488 37 100.0 35 ..................................... CAAGCCTACGGCTACGGCTACGGCCAAGTCCAAGC 8416 37 100.0 36 ..................................... TATTCGAATCGTGTTCAGTTTTTGAGGCGAGTGAGC 8343 37 100.0 34 ..................................... AAGCGTGTTCCCATAGTTGCAGCAAACCCGCTTG 8272 37 100.0 36 ..................................... TGACGTATTGCGGGTTTATTTTCCCCTCGTCAATCA 8199 37 100.0 36 ..................................... ATTCATGCTTACACGGGCGGGCCAAGGGGTGACCAG 8126 37 100.0 34 ..................................... TTGTACTTGAAGTAGCGGGCCATGGCCCATCCTT 8055 37 100.0 36 ..................................... CCTCCAACGACTTGTTCACGCCCAGAGACGCGGCAA 7982 37 100.0 35 ..................................... GTCGTCGGACTTGGGCTTGTCGTCGGACTTGGCGG 7910 37 100.0 35 ..................................... GGACTTGGCGGCGACGGGCTTGTCGTCGGACTTGG 7838 37 100.0 34 ..................................... AGGCTGGCGGGCCAAAGAAAAATCCCCCTTGAGG 7767 37 100.0 35 ..................................... ATGAATGAGCGAGTTAGAACGTAAGACATTTCTTC 7695 37 100.0 36 ..................................... GGGCAAAACCTCGACCTGCCGGTCGCCGTTGGGCAG 7622 37 100.0 35 ..................................... TTCGCCGTGCAGCACGACAAAATCGCCCATCTGCC 7550 37 100.0 34 ..................................... AGCAAGTCAAGCTGAAAGCGCCAAGCCATATTAA 7479 37 100.0 34 ..................................... CTATCAATGCGGCGATAGGGATAAACCGGCCTTT 7408 37 100.0 34 ..................................... GTCTTCGCTAACGCCGAAGTCTTCGAGAATACCT 7337 37 100.0 37 ..................................... TTCTTCGACAGCCGCCTCGATAGCCCGCAGACGGGGC 7263 37 100.0 33 ..................................... TTCTTCGACAGCCGCCTCGATAGCCCGCAGACG 7193 37 100.0 38 ..................................... TGGATGGAGGGAGGGAGGAGACGGAACAGAGCACCAAA 7118 37 100.0 35 ..................................... GCAGGGCTTGCAGCCTGGCGAGAATCTGATGGAGC 7046 37 100.0 33 ..................................... AAAACGTAGCGCTTGCGCTCGCCGTGGTTGGCC 6976 37 100.0 38 ..................................... AGCCGGGACTCCGGCCCGACGGCGCTTGGGCTCAAGGC 6901 37 100.0 34 ..................................... AGCAGCCGGCTATACGTGCCGCCGCTTGCACGAC 6830 37 100.0 36 ..................................... TGTCCGCCTGTTGGTTGCCGAGCAGGGCCTCAGCCT 6757 37 100.0 37 ..................................... CACCACCCTCTTGACGAACGTATCTGTACTACATCTC 6683 37 100.0 35 ..................................... CAACGACAGCGGCTTGTTTGTTGTTTTGCGCGATA 6611 37 100.0 36 ..................................... CGATTGGGCTGAGCAGAATGCTGTGACCCTGCCCAA 6538 37 100.0 32 ..................................... GAGGTAATCAATCATCTTGCTGACGTCCATAC 6469 37 100.0 34 ..................................... AGCAGCACAAAGCATAGCTCGGGGGATTTTTCAG 6398 37 100.0 34 ..................................... GGCGTCCGTTACGAGGTGCAACATGTCCTCGTAA 6327 37 100.0 35 ..................................... ACACGTATACGTACCTGTCCCTCGTGAACAGCCTG 6255 37 100.0 37 ..................................... ACCTGGCCGCCGGATGCTTTTGCCGGGCGTGAGGGCA 6181 37 100.0 35 ..................................... CCCATGCTACCCCCTGCCCACATCCTGGCAAGGGC 6109 37 100.0 35 ..................................... TTGCATAGCCGCAACAAACAACACCTGGTTGGGAA 6037 37 100.0 34 ..................................... CTCGGCAAGCGCCCGCATGCTTGGACATTCGGGC 5966 37 100.0 34 ..................................... AAGCTGGGAAGCGCTTTTGCAGTTCCTCAAACGC 5895 37 100.0 36 ..................................... GGATTTGGCGGCGTCGGATTTGGCGGCGACGGGCTT 5822 37 100.0 36 ..................................... GATGGCAAACGGCAAGAACGGGCGTTTGCCGTGATG 5749 37 100.0 35 ..................................... CTCCATGAGAGAACCCGTAGGCGACTCTCATGAGC 5677 37 100.0 35 ..................................... TCGGGTAGCCCAAGTTGAGTCCCAGCCCGACTGGG 5605 37 100.0 36 ..................................... TGAATACTGGGATATTGGCCTAGGCTATATCCCGCC 5532 37 100.0 36 ..................................... AAGCATACGCGCCTTGTTTACAACGCGCTCGAGCAT 5459 37 100.0 38 ..................................... TTTTGAGCATTGGGACGCCTACCTGTTCAGCCATCAGG 5384 37 100.0 36 ..................................... TCGGCTTGCTCATCCCATTCGGCGTAGATACCCAAG 5311 37 100.0 35 ..................................... AGACGCTTGCTTACAGCATCGTGAGCGGCTTGAGC 5239 37 100.0 38 ..................................... TCTCGAGTATTCTCTCAAAGTCTTTGCGACTGATAAGG 5164 37 100.0 35 ..................................... GCTCTCGCCGGGAACGTATTCCAGGATGTAGCCTA 5092 37 100.0 35 ..................................... TGCAAATGGATGGAGATGTACATATACGTATGGAG 5020 37 100.0 39 ..................................... AAAGACGCGGCCACAGCCGCTGCAACGCTGGACACGCGC 4944 37 100.0 35 ..................................... TTTGAACCGTTCTGCCAGCTTACTGATAGTCATGG 4872 37 100.0 35 ..................................... TTGCGCGCTGGGCTGGGCAAAGTATGCCGCCCATT 4800 37 100.0 35 ..................................... CAGCATACCACGCTGGGAGGGTTCATGCCCCGACG 4728 37 100.0 36 ..................................... TTCGGCGACTGTAAGGCGGGAAGCCAGACGACCCTC 4655 37 100.0 32 ..................................... CACGGAGACATACTCAGGCTTATCGGGGACGG 4586 37 100.0 33 ..................................... GCAGGATGCTATTAGCGGATCGAATCGCAGCAA 4516 37 100.0 34 ..................................... CAACCTCGGCCACAACCTCACGCACAACCTCCCG 4445 37 100.0 38 ..................................... TGTATACGCCCACATTTGCGCCCGCATACTCATACACG 4370 37 100.0 34 ..................................... CCAGAATCACGAGGACGACATTTACGGCAAGATA 4299 37 100.0 35 ..................................... TTATGCTACTTCTTTAAGTTGACACTCCCACGGCT 4227 37 100.0 35 ..................................... CTGCAAACACCCGAGTGCCCAAGCATACAGGCACT 4155 37 100.0 37 ..................................... GAACGCGGGCTTGGTGGACTTATCCGCCGTGGTTTTG 4081 37 100.0 32 ..................................... AGCCGCGACCCCTCGAGCTGACTCCCTCGAGG 4012 37 100.0 35 ..................................... CCCCACCACACGGTGGAGTACACTCGATCTAGTGC 3940 37 100.0 36 ..................................... TTGCTACCCGTATTGCGGGCGGTGAATGAGGCGGGA 3867 37 100.0 36 ..................................... ATGGCGGTGGTAGGAGGTTGACCTTGAGGACATTTT 3794 37 100.0 35 ..................................... CTGCGTCAGGCCCTTGCTATAAACATGGAAATAGC 3722 37 100.0 37 ..................................... TGGCCGGTGGTGCAACTGCTGGGAGGTAGCCATGCCC 3648 37 100.0 32 ..................................... TCGTGCGATGCGCCTGGAACCTATAAACTGAC 3579 37 100.0 34 ..................................... AGCTTTGAGCAGTTCTCCGTATTTCGCTTGTTCT 3508 37 100.0 35 ..................................... GAGGAGCGGGTACACCCCGTACCCGCATTTCGGGG 3436 37 100.0 36 ..................................... TTGAGTGGCGGCTGGAGGTATCTTCGCGGGAGGTAT 3363 37 100.0 34 ..................................... TTTTTGATGTAACCACCCCCTTCTCCCATGCCCC 3292 37 100.0 34 ..................................... TCGATTTGCTTCAGGATTTCGCTCCGCATACAAC 3221 36 81.1 0 .......................-.C.CA.AAA.... | T [3188] ========== ====== ====== ====== ===================================== ======================================= ================== 79 37 99.8 35 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : GTGGATCGGGTGGATATTCTGGTCACATACGACGTGAACGTAACCTCCGAAGACGGCCAGGCACGGCTCGCACGGGTGGCCAAGGTGTGCAAAAATTATGGTCAGCGGGTGCAGATGTCGGTGTTTGAGTGCCGGGTGACGCGAGCACAGCTCGAGGAAATGGAGGCCAAACTTCTGAAGATTATCGAGCCGGACAAAGACAGCCTGCGAATCTACACCCTGGTGGGTGGTCGAGACCGCTGCCTGCGGGTTCACGGCCAGGACAGGTACACCGATTTTGACGACCCCTTGGTGGTTTGAACCACCGGGCACTTGCTTTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCCCCACCCTCCGCCACCCTGCGTCGGAACCCTTTTTGGGGGGGTTCGCGCAAAACCCCCCTTGAGCCGCGTCCAGCACGCACGCTAAAATGGGGCT # Right flank : GCCTGTGGGTTAGGGAGGGGAACCCGCAGGCGTTTATGGATGCCCACCATAAGTGGGTTGAGTACTTTTTACAGCTAAACTCCCGGACGCGCTAGGGAAAAAAGTCCCAAATGAGTAGGTTGGAACAGGGGGCGCTGTGGGGTAACTTCACACCGAGTCCAGGGTCAGTGCCAGTTGTCCGAGTGCCAGGCCGCCATCGCCAGGAGGGACTTTCTGGTTCCAGTACACTTCAAAGCCTTCTGAACGCAGTTTGCTAAGGGTTAGCTGGTGCAAAAGCTGGTTTTGCCACACCCCGCCTGAAAGCACCACACGAGTGGTCGGGTGGGTGGGGTGGAGGGTTAGGGCCATGCGCACAACGGCATCGGCCAGGGCGGCGTGGAAATGCCGGGCTACCAGTGTGCTGGGGGTGCGGGCCTTCAGTAAATCCAGAACAGCCTGGAGCAAAGGTTGGTAATCCCACTCGAACAGGCCCGAGGTTTGCCGGATGGGCAGGGTTAGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 27250-33015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDFV010000013.1 Meiothermus sp. CFH 77666 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27250 37 100.0 36 ..................................... ATCACCGCCGCTGACACGTACCCCTCGAAGGTCGGG 27323 37 100.0 35 ..................................... AGGAGCAGGCGTGCCCACGAGGGGAGCGCCTTTGC 27395 37 100.0 36 ..................................... CCTGCAGCCTGGCGAGAATCTGGTGGAACTTGTCCA 27468 37 100.0 35 ..................................... CAAACCGGGTGCTTTCTCAGCCACACGGGTATGGG 27540 37 100.0 36 ..................................... TGGCATCGGTGGGACTTGAGTCCCGATAGGCAATCT 27613 37 100.0 37 ..................................... TTCGAGCTCTGCTAAGGGCAGCGTCAGCCGTGCCCTC 27687 37 100.0 35 ..................................... GGCGACTCTCATGAGCCCCAAATGAGAAATCCCAG 27759 37 100.0 36 ..................................... AGGGCCCATCCCTGGGCCATAGGCAGATCAGAGCCC 27832 37 100.0 35 ..................................... AATGGCCGGATTTTGGTGTCAATGGCGTACCGGAT 27904 37 100.0 35 ..................................... CTCCCGGCACAAGAGAACCATTTGATAGTCCACCG 27976 37 100.0 36 ..................................... GGGGTTGCCCCCCAACCACACGTAGGCTAGCACAAC 28049 37 100.0 35 ..................................... CAAGATACATCGCTTGTCTCCTTTTCCACCGTGAT 28121 37 100.0 34 ..................................... TCTCACTCGGAGTAAGCCTGAGCGCATTCAAGCG 28192 37 100.0 33 ..................................... ACGCTGCAGCCCCCGCTGCACTAGCAGCGCCAT 28262 37 100.0 37 ..................................... CTTGCTGGAGCACCTGTAGGCGCGCCAAGATTTGGTG 28336 37 100.0 34 ..................................... CACCCTGCACACCAGCGCTTGACGCTTGACCCGA 28407 37 100.0 34 ..................................... TCCTCCTTGCCCTGGATTGCCCGCCAGGGCTCGG 28478 37 100.0 35 ..................................... GGGGAGAAGGCCGCTTGTGAGGGCGAATCGCCCTC 28550 37 100.0 34 ..................................... TTCAACCTGGCAGGGTATACCGTTAGCGTCAAGC 28621 37 100.0 37 ..................................... ATCTATCCCGGCTATCATTATCCCAGGCTTGCCGGCC 28695 37 100.0 40 ..................................... ACGGAGATGTGTTCGGGCTTGTCGCCGGGCTTGGCCGTAG 28772 37 100.0 38 ..................................... TTGGGGGAAAATCCTTGAACACCGGAAGCTCGCCATCT 28847 37 100.0 35 ..................................... ATCGTGGGAATTTCGGATCCTACGAAGCCGCATTG 28919 37 100.0 36 ..................................... GCTGGGACGAAGCGCGCTGGGCGGAATTTTTCGCTC 28992 37 100.0 35 ..................................... CGTTACATGTAGCGTTGTTCATGCGTAGCTAGCGT 29064 37 100.0 36 ..................................... TAGAGGGCGGATTTTTGCCTCTAGAGCGTACTTTAT 29137 37 100.0 34 ..................................... GGCGACTCTCATGAGCCCCAAATGAGAAATCCCA 29208 37 100.0 34 ..................................... TGTATTTCCGCCGCCAGCCGACAATGTGGGCATC 29279 37 100.0 41 ..................................... TTTATAACTTTAGCCTATATCCCACTCTATAAGCCGCTCAG 29357 37 100.0 36 ..................................... TTTGTCGGGCCGAGCGAAAAATTCCGCCCAGCGCGC 29430 37 100.0 36 ..................................... GGGCGGCATGTGTCCCAGCGATTCTCATAATCGCTG 29503 37 100.0 36 ..................................... GGTTCATTCGCTCACGCATGACAGTCAGTTCCTCAA 29576 37 100.0 35 ..................................... TGATTCTGGTGTCAAGGCCAACAGAAGATTCAAGG 29648 37 100.0 32 ..................................... GCCAGATTGGGCAGCGCTTCATGCCCACCTAC 29717 37 100.0 36 ..................................... TTTATGCGCCGCATCCACCAAAGCAAGCAAGTCCTC 29790 37 100.0 35 ..................................... ATGCTCGATGACCTCCGCGATGACTTCGCGCACAA 29862 37 100.0 38 ..................................... GGCGGGGACGCGGAGGTCATGCTCGATGACCTCCGCGA 29937 37 100.0 35 ..................................... CCAGGGTTCCGTACCTGAACGTGTCCATGTACGGG 30009 37 100.0 34 ..................................... CGATAATACAGAAGGGGGATACCAGGGCGGAAGC 30080 37 100.0 33 ..................................... GGCTTGGAGACGGGCTTGTCCGCCGTAGGCTTG 30150 37 100.0 36 ..................................... TTCACGAAAGCCACCCGGCAGGTCGAGCAATGCTTC 30223 37 100.0 37 ..................................... GCTGTACCTCCTTCCTTTCTCCTGACTCTCCTTCTCG 30297 37 100.0 36 ..................................... CTCCTCCTTCGCGGCAAGGAAGGCGAACAGCTTGTC 30370 37 100.0 35 ..................................... GGGTAATTCGCACCCGTTCCTGGGGGGTTGCCAAT 30442 37 100.0 32 ..................................... ATAGACTGATAGCAGACATCCCCTTCGGGGAA 30511 37 100.0 36 ..................................... ATGCAAAATGAGCATGATTGCTCCGTGGAGTGATGG 30584 37 100.0 34 ..................................... CGCCAGGGCAGCACGGTCAAAACCTACCTGAAGG 30655 37 100.0 35 ..................................... GCTGGGCTGGATTGGGTATGCACGTACTCTCCGCC 30727 37 100.0 36 ..................................... GTTGCAGTAATTGATTGCGAGCGGGATGCCCGCAAT 30800 37 100.0 36 ..................................... GCTGAGGTCGTGCATGACCTCGCGTACAACCTCCGC 30873 37 100.0 34 ..................................... GCCGGAATCCCGGCAAACTTGGACAAATGCCGGG 30944 37 100.0 37 ..................................... GCCGATCTGGATACCCTCCTGGAATATACGGTCTTGT 31018 37 100.0 36 ..................................... AGATACGTCTCCACCTCTCCCGGAGTTGGGAGTGGC 31091 37 100.0 38 ..................................... TGCGCGCGCTGCTGGAAAAGGAGCGAGGGATGTGGATG 31166 37 100.0 35 ..................................... CTTTATCTGGGGTACGCTCAGGCTGGGAACTTCCC 31238 37 100.0 35 ..................................... CTATATGGAGCTTGGAAGCCAAGCTTTTCCAGAGC 31310 37 100.0 35 ..................................... CAGGTACTTTTTCTCATAAACCTCCTGTGCTGCTT 31382 37 100.0 37 ..................................... AACGACATCATGCTGATAAGTCCAAGCGAGATAACCG 31456 37 100.0 37 ..................................... GCCGGGTTGGGGTGCGACTGGGCCCTGGCTCCAGTCG 31530 37 100.0 34 ..................................... GCCGTAGCTATCGAAATACTCCTCGACAGCCCTT 31601 37 100.0 36 ..................................... GGCGTCCAAAGCGTAGCGGATTTGGGGTACGCTCAT 31674 37 100.0 37 ..................................... TGAGGCTACCAAGCCCGCCAAGTCTGAGGCTACCAAG 31748 37 100.0 35 ..................................... CGCTACCAAGCCCACCAAGTCTGAGGCTGCCAAGC 31820 37 100.0 36 ..................................... CAACGAGGGTCGTGCGGGGTTGCACCAACCGGTTAT 31893 37 100.0 33 ..................................... AGCAAATGCCAGCCCCATTGACAAAATGGGGGC 31963 37 100.0 36 ..................................... ACGAGGAGGTGAGAAAGGAGAAGGGAGGCATGAAGG 32036 37 100.0 35 ..................................... CCAACCCGAAGATAGCGGCCCATCTGAGCCACCAG 32108 37 100.0 35 ..................................... GTAAAGCCGCCAAGACCTCAGCAAGAGTCTCCGCG 32180 37 100.0 35 ..................................... AGGTCGTGGCTGAGGTTGTACGTGAGGTCGTGGCT 32252 37 100.0 35 ..................................... TCTCGCGGGATGGCAATAGCTTACCATGCCTCCAG 32324 37 100.0 36 ..................................... GCGGGCTTGGTGGGCTTGGTAGCGGGCTTGGTGGGC 32397 37 100.0 36 ..................................... AGTAGGGAAACGAGGTGAGGCAAGCATTCCTCCAAC 32470 37 100.0 34 ..................................... GAGCCCCAAAACGAGGCCGGGGATGGTGGTGCGG 32541 37 100.0 37 ..................................... ACATCCTGGTCAACGATGGGGGTCGGAGCAAACTCAC 32615 37 100.0 36 ..................................... GACGGTGCATCGTTTGTGGTGGGGGCGCTGCCCTTT 32688 37 100.0 37 ..................................... TCGTTGCCGAAATAAGTTTACCCCGGCTATCCGCCGG 32762 37 100.0 36 ..................................... CGACCCAGAAAAAAATGTGTGGGTGCGTAAAGGGAG 32835 37 100.0 35 ..................................... GCTGGAGTTCAAGTTGGATTGAGTATAGCTGTATC 32907 37 97.3 35 ....................................A TGGCCCAGTGAAAACCAAGCGTTCTATGGCTGCGC 32979 37 94.6 0 ..........A.........................G | ========== ====== ====== ====== ===================================== ========================================= ================== 80 37 99.9 36 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TTGGCGTTATATTACCCAGCGCATAACCATCGAGGGAGGCCATTTTGACCTCCCCCGAATGCGGCCCACTAGCCGCCGGTGCCAATTTTGGGCCGGTCGCCATCGGCCAGATGCGGCCCTGCCGTAGCCCCCTGGGGCGTGGCAAGCGCCAGCAGGCCCAGCAGCACCAGCGCCAGCAGCCACCCTTTCGCCCAAACCGATTGCCTGAGGTTGTTTGTGCCTATTGTGGGATTGTGAAAGTTCGTTTTCACAACCCCCAGGGTCGGGGCCCGGTATGCGCGATTCGTGCAGGGTGATGTAACCTAAGCGTCAGAGACCTGCGCGAACCCCAAGCAAGTGCCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCCCCACCCTCCGCCACCCTGCGTCGGAACCCTTTTTGGGGGGGTTCGCGCAAAACCCCCCTTGAGCCGCGTCCAGCACGCACGCTAAAATGGGGCC # Right flank : GTTTTGGTATGTATTTGAATCAGCGTACTATCAACGAATATAACCAGGTCATTTTCTTTGCTCCTGGACATACTCGAGGGAACTTTTTTTACCTTTGAGTTTGATCTGCGGGGGGGCAGGTCTTTTTTGGGGGTTAGCAGGCTCGAAAACCATGAAATCGCTGGCCCAGGAGGTTGGGTCTGGGCCGTAGACTCTTCTTTTGGACTTTTTAGAGAACGTGCGGTCCATGTCTTTATGCTACAGTTCATCAATCACTGGATTTCAAACTTGGCTCGGGCAGCAAGGCAAAGCCTACCTATTCCTATCGAGCGAAAGCTAAGGTAAAGATTGGAACTTGGGCATGAGTCCGAATAACCGCTCCCTTGGACAAGATACTCGTCTCACCTGCGCTGCTCCTGGACATATTCTAGAGACGATTTTGACCCCGGTTTTAGTTGGATCGGTTTTGGTAAAACCGGTTTGCTGGGTTTGGTAGGCACAATAACGGAAAGTCGTCAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA //