Array 1 949454-951678 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040900.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP18-6199 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 949454 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 949515 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 949576 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 949637 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 949698 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 949759 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 949820 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 949881 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 949942 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 950003 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 950064 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 950125 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 950186 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 950247 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 950308 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 950369 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 950430 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 950491 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 950552 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 950613 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 950674 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 950735 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 950796 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 950857 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 950918 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 950979 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 951040 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 951102 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 951163 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 951224 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 951285 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 951346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 951407 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 951468 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 951529 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 951590 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 951651 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 967811-969226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040900.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP18-6199 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 967811 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 967872 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 967933 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 967994 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 968055 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 968117 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 968178 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 968239 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 968300 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 968361 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 968422 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 968483 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 968544 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 968605 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 968666 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 968728 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 968789 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [968831] 968831 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 968892 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 968953 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 969014 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 969075 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 969136 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 969197 29 96.6 0 A............................ | A [969223] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //