Array 1 236260-235270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSIW010000003.1 Scandinavium goeteborgense isolate 18070_Bacillus_Ancestor_Tube, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 236259 28 100.0 32 ............................ CAGCGGCGAAATGCTTCGAAAGATTTTGCGAT 236199 28 100.0 34 ............................ ACCTGATGCGCGGTGGGCGTCTCACATTTGGAGA 236137 28 100.0 32 ............................ TGACGTGCAGCAGCCACATCAGAGCTGGCGAA 236077 28 100.0 32 ............................ TCACGATATAGTCCAAACCACACAGCGCGGTC 236017 28 100.0 32 ............................ AAACTGCAGGCGCTTGTCGAGTCCGGGGAATT 235957 28 100.0 32 ............................ AGCATACGAAGCATTTTGTGGTGATCGTGATT 235897 28 100.0 32 ............................ TCATAGTCTGCACGATGCGCGTCGAACAGGTC 235837 28 100.0 32 ............................ GTTAATCACGCCTGCTTTTGTCTGCTGCCGAA 235777 28 100.0 32 ............................ CGATAGAAAGAGACTTCCGGCCTTGGCTCTAT 235717 28 100.0 32 ............................ CCACGGCGCAAATGCAAAATATGCAATGAATG 235657 28 100.0 32 ............................ AACAAGCAAACAGCCGATACCACCGCCGAACC 235597 28 100.0 33 ............................ AAACATAATCCGCAAACATTTTGGTTAAGTCGA 235536 28 96.4 32 ......C..................... CGGATAATATGGCCCAGTAGATATTCCAAAAA 235476 28 96.4 92 ............G............... ACCCGAAGGCATACGCATGAGCAGTTGATGTGGCTTACCGCCGCACTAGCAACCTGGAAACGCCCGGCGGCGCTTCGCTTGCACGGGCCTAC 235356 28 85.7 31 ....AA......T....T.......... ATAGCACTGGATACGGGGAGTGATGATTACG 235297 28 82.1 0 ...TA.C.........A.......A... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 16 28 97.5 36 GTTCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAGACTATTACAACAATACGCGCCTGGCACTGCTTGACGAACCGAACGGCGCAGAATGCCTCTGGAATCTTGAAGGGATTCGAGAGGAAGTGAAACGCAAATAATCCATCGCCAACTTAGACGCGCTTACAGCCACAGTGGCGCGTTTAATATTTTTCCGCAGGGCACAAAGTGAAAATTAATGGAGCTACCTGTGTACTGTCTCGATATTTTTTAGCTAACTAAATGATATCGACTGGTTCTCTCCGGTTCACTGCCGCACAGGCAGCTTTGAGAGAAATTTCCGCAGAGGTGCAAACGGCTTTAATCACGCATTCAAACCTGTATTCGTCCCCCGCTGTTGGCCGTTTTGTTTCCATGACTCTTCAAACCCTTTTTTTAGGTTGTTTTGTAATGCGTTGTTTTTGAATGCATTTAAAATTGAAGCAGAAAAAGGGTTATTGAAGGTTAAATTGCTTTTGTTGAGAGCAAACAATAGGCTATGTTGCGTTGCTTTCA # Right flank : CGCCCGGCGGTGCTTCGCTTGCACGGGCCTACGTTCACAGTTTTTAATATCTTTGATAAAAGAGGTTTAACCATTCACGCCTGTTCTGGAATGTGCAGACCTTTTTATTGTGAATGTCATGGCTGCTGTATGTTTATTTAACTCGCGCTTAATTCATTATTTTTAATAGCGGTGAGATGCAAATACATCCGAATTCTTTATTGTATTGTGAATAAATCATGATTCAGGAATATCTTGATTTACATCATCATGTTTTTTTGATTGTCGGCGCTAAAGTAACCGCTACCTTATTCTGTCTGTTTTCGTACAGTGAAGTGTGAAATGGATATTACCCCGTCCGATCTAAAAACGATTCTGCATTCAAAACGTGCGAACATTTACTATCTCGAAAAATGCCGACTGCAGGTGAATGGTGGGCGGGTTGAATATATTACCAACGAAGGAAACTCGTCGAGTTACTGGAATATTCCCATCGCTAATACCACGGCGGTGATGCTCGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 240279-238691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSIW010000003.1 Scandinavium goeteborgense isolate 18070_Bacillus_Ancestor_Tube, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 240278 28 100.0 32 ............................ TTCTGCGACTATCACAGGTAATTCCCCCAACC 240218 28 100.0 32 ............................ TGGCATAGAGAGAGAGAACATGTTCCGTGCGT 240158 28 100.0 32 ............................ TCCAGTTCAGAGATGCGCTGGCGTAATGTTCC 240098 28 100.0 32 ............................ AGCTGCACACCATTCCTGCACCCGCTGGCGGT 240038 28 100.0 32 ............................ GAACTCCGCACCAAAATCCCGGAGATTGACGC 239978 28 96.4 32 .............A.............. TGGCTGCTGCGCATTCAGCTTTTGCTGAAGTG 239918 28 100.0 32 ............................ AGGGCATAATCAATGTTTTGCCCCCGATGATA 239858 28 100.0 32 ............................ CGCTGTCGGGCTTTACTCGGCTCAGGAGTGAA 239798 28 100.0 32 ............................ CGGTAAACGGCGTCGATGTGGTAACTGCCGAC 239738 28 100.0 32 ............................ CGTCATTAGTGTTTATCGTCGTAGAGATTTGC 239678 28 100.0 32 ............................ ATCAGTGGCCCGATACTCACCAGGCCGCTGAA 239618 28 100.0 32 ............................ TAATTCCGAGGTTATCGGGTTTGCAGGGTTTT 239558 28 100.0 32 ............................ ATTGAAAACCACATAGCCAGCTGCACACCATT 239498 28 100.0 32 ............................ TCGAGTTGATTGATCGTCATCGGCGTGTTCTC 239438 28 100.0 32 ............................ GCTTGCGACTGCAATTGGTACAACTATTGGCA 239378 28 100.0 32 ............................ AACGTCAGGCGGCGCCACTGACCAAAATGTGC 239318 28 100.0 32 ............................ TCTGGCGCGTTGTGGCCACCACGACCACCAGC 239258 28 100.0 32 ............................ ACAACTGCCCCGCTGGATCAATTTTCCTATAA 239198 28 100.0 32 ............................ GAAAACGTGTTGTGCAGTTCCTCCCCGAGGCG 239138 28 100.0 32 ............................ ACAACCACCACCATTACCACCAAAACCACCAC 239078 28 100.0 32 ............................ GTCGGCAACAAATCCCGCAGGCAACTTATCAA 239018 28 96.4 32 ......................A..... CAGCACTGTGTACGTTGTTTCGAGCGTCTTAC 238958 28 100.0 32 ............................ TAATTTATCTGGCGTGGAACTCAGCAGCACCC 238898 28 100.0 32 ............................ ATTATCGCCGCAGTTGTCGTTATTCCCGTTGC 238838 28 100.0 32 ............................ TAAATTTAAAATGGAATGGGCATGTTTTTTAT 238778 28 100.0 32 ............................ CGCCGGAAGATAAAAAGGCTGACTGGGATGAT 238718 28 89.3 0 ....A......C............A... | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.3 32 GTTCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCCTACCTTGATGCCCTGAAACTGGCCTTCGATGAGACACTCAGCGATCTGCGCATTACTGAACTGACTGTGGATGAGATACCGCTGGAGGAGCCAAACTGGCTGGTTGCGGATTCCGATACGCAGTATGAATATTGCCGGGTAACGGCATCCTCGCTGTTACACGCGGAAGATGAAGCCGATGCGGCAACGACCGCCGGACTGCTGCACGATCTCGTCTGCTTTATGTGCGACGAACTCAAAGCCCCTCGATTTGTTTGCGCCGAACCTCAAACTGCTTAAACCAGCCATTCATGCCGGGACGCGTTCCCGGCGGTTTATCCCGATTCTCATCTCCGCTTCTGACAGCTTTTTATATCCAATCCTGCTAACCCTTTTTTTAGAGTGTTTTGTAACGTATTGATTTTGTGTTTATTTAGAATCGAACCAGAAAAAGGGTTTTAAAAGGACAAATTGCTTTTGTTAAGAGCAAACAATAGGCTATCGAGCAGTTCCTCCA # Right flank : CGCCCGGCGGCGCTGCGCTTGCACGGGCCTACATTCACTGCCGAAGCTGGCAAAAGTAAATCCGTCCTGAATGAGTTATAAGAAATTTCATGTGAAATAACTCACCAATATTCTTTTTCGTTAGGAGTACGATCAGCGGGAACATATTACTTCTTTTGGGATTAAAAAATGTTTTACCCAAATTTGGTGAGGGTGGGCTAAGGCGGTTAAATGTTGATGGTTCTACTTACAGGTCGTCCTGATGCGCTGCGGCTAGCAACGAATGGTACGAATTATAAAGAATTGCTTTATAGGGATTCAGTAAAACTCTCATATCTCGATAACTGTTTCATAGTCATTCTGGAAAAAAGAGCGATGCATACACGACGTAACTACTTGATGGAAGGAGTCATTACTACACTTTCGATATAGGCAATGAGAATAACATTTTAATTTAAGGTGGCAGTTTTTCTTTCGACACCATAAGTAACACATACTCTTTGCGAGTAGTTATTAGTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //