Array 1 176342-176108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 176341 32 100.0 35 ................................ CGGCTGGTTCAGCGGATGCTCTTCCAGGCGGTTTA 176274 32 100.0 36 ................................ ATTCTTCAAAGTGCCATCCACGAACCCACACATATA 176206 32 100.0 35 ................................ TGTTATACGCAGAATGGGTTGCTTATTTGTACTAT 176139 32 96.9 0 .........T...................... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 99.2 36 GTCGCACTCCATATGAGTGCGTGGATTGAAAT # Left flank : GTGGACACATCTCGCCTTCACTGTAGACAATGGAGTATTATCCGTGTACGTGAACGGCAAACCCCAGTTTGCAGGAACAGGATTTCCAGAAGTATTTACATCCAAAGCAGGAACGTTCAGCTTGGGTGTTAACTGGTGGGACCCTGCCTTTAAAGGCGCTATTGATGGGTTAAGTATATTCGCAGGGGCGCTTCCTCCATCTCAGGTGGCAGGACTGGCCAAGGTGAAATGAACCTAGGCTGATAGATATGAGAGGTTGAGAAGAAGCATCTCCAGTGAGAGATTACTGTGTATGCTTCTTCTTTTTGTGTAGCATACTCAGTGCGAATGTGAAGCTCACATGAATTCCCCGGGTCCTTCGCACCTCAGATTTTGTCGAAATTCTGTCGAATGTGAATGATTTGTGAATGCATCATAAAGGGAACATGCTTTTTATGATGCCTTATGGTCAAATTTCGCTAAAATGAATTGAAACGGGTTTGTTTTGACCCTTTTTCGCT # Right flank : TTTTAATCGGCAATTCATTGCTCTCCACTTACCCACGTGCTTTCAAAAGCATTCAAACCCGTGTGAAATTTTTCCTTGGTCTATTAAATTCCACTCATCTCGTTCGTGTCACCATGTCCTTTTTGGACAAATTATGCCAAACGTAGTTTTTCCGCATGAGTTGCAATAAAAATGTTGACAGTTGTTAATTTTTGGACAAAAATAGTAATTGATCTTTAAAATTATGGAATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATACACCTACGATTTTAGCGGAGTTTGAAGAGTATCTAAAACAAAACGACTTGACTTTGGCTCAATTTGCGGAATATTCGGGTGTTTATCAAAGAACACTTAGTAATTGGATTACTCAACATCGTCCTGTTTCTGTACAACAGCTTGACCGAATCACGTTGGCCATGGGATTACCGGAGGGCTATTTTTACGAACTATACATAGAAAATTACATCATCGACCTTCCCCCGAATTGGCGG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 179911-179395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 179910 33 100.0 35 ................................. CAACATTTAATGCCATTATGGAAACCCTCATACAG 179842 33 100.0 38 ................................. AAAGAAATTGAAGGACATACGCCGGAAAAGGATGATTT 179771 33 100.0 38 ................................. CCCTTGTTTTCGGGACTCTTTGTTATTTGGGAGGTTTG 179700 33 100.0 36 ................................. GTTCCAGTCTTAATATTCGCCTGCGCCTGTTGTAAG 179631 33 100.0 36 ................................. CGATTAAGGATCGTATAAGCGGTACGGAACGACTAC 179562 33 100.0 34 ................................. GATAGTACCGGCCGCTTACTGAATGTGAAACATC 179495 33 100.0 35 ................................. CATACCGAGGCGAAGCCGCTGACGGCCGTGACGTA 179427 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 8 33 100.0 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGATCTTGTTAATCCTAATTACTTATGATGTAAGTACAGTAGACAGGGAAGGCAGAAAAAGATTGGCCAAGGTTGCAAAAAAGGTGTGTAGATCACGGACAAAGGGTGCAAAATTCCGTGTTTGAGTGCATTTTGGATTCGACCCAGTTTCGCCGTTTGAAGTATGAATTAGAAGAATTGATCGATAAAAAAGAAGACAGCCTGCGTTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATGGGGGCAAAAGAATCTTACGATATGGAAAGCCCGCTGATTCTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTCGGATCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGAATCCACTTTCTATAATAGAAGTCAAGGGTAGATTCAAACTTTTTTAGCATCGTTTTCTGCGAGAATGTATGGAATTGATACCATTAGCGTATCAATTTCTGAATTTTCGCT # Right flank : CAAAATGTGGTTATATCATTGCTTTAAGAATTTAGTGTCGCACTCTGTATGGAGTGCGACCTTTCTATCACACACTGCGTCCATTTTAAACAAACTAGAAAACAACGCAAATCCTCTTGTCTACTCAAAATATATTTTACAAATACATTTATGATTATCGAAAACATAAAGGTATCTACTGATCAATGTAGAATATATATCGCTGTACTCCAATTCCAGAGAGGGGCAGATGAGGATGAAAAGGCGGGTTGCAGCAAATAGAATCAAGAGAGGTTTTTTAATAACGTTAGCATTATTACTAATGATTGCAGGGTCTTCATTGGGAATGAGTGATGCTTCCGCTGCACTATCTGAGCAGAAGGATAAGCAGGATGCGCCCGCTTTTTCCGAGGTATCCGTTCATGATCCCTCCATCGTCAAAGACGGCGATACTTATTATGTGTTTGGTTCACATATTTCGGCGGCGAAGAGCAAGGATCTTAAAAACTGGACTTCTTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 189513-188594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 189512 32 100.0 35 ................................ CCTAAGTCATGGACTAAAAAGCGTTTAAGAGAGGC 189445 32 100.0 36 ................................ TTTAGAGAAGGTCCAATTATTCCACAGCGTGAACAA 189377 32 100.0 37 ................................ CATTACGATAAGCCTTCCATGTTAAGCCAGAATCAAA 189308 32 100.0 35 ................................ AATAACGGCAGCCATACCGAATATCCCCCGGTTAG 189241 32 100.0 37 ................................ TGTACAGGTTGAGAGAGATACGAGCGATGATGTATGC 189172 32 100.0 38 ................................ CGGTAAAACGTTATATTCGGTAATTTTAGTTTTCGCAT 189102 32 100.0 37 ................................ ATCGTCCCGGCTGGGGCATCCAAGGTCTTTTGCGTAG 189033 32 100.0 39 ................................ CGGTATAAGGATATCCCTAAAATGGTGGACGAGCTTAAA 188962 32 100.0 37 ................................ GTATTCGTCATCTAAGGACTCCACGTACCGTGTATGG 188893 32 100.0 36 ................................ CGTTTCAAGCAGCTCCATCGGAACGTCTTGACCGAT 188825 32 100.0 37 ................................ TCTATCGGTCGAAAGAAATGGGAAGCTACCGAGGAAC 188756 32 100.0 33 ................................ CTCAAGGCGATGGTGGTTCCACTGGGGTTGACA 188691 32 96.9 34 ......................T......... ATGACGAATATCATGTCGACCATAGAGCAGCTCA 188625 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ======================================= ================== 14 32 99.6 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATTTCCGTATTCGTGTCAATGTCATCTATCCTGGAGCGATTTCGACGAATATTGACGAAACTACGGAGAAATCGGAAAGGTTAAAGCAGATTACTATCCCTGTCCAGTTTCCCGAAGGAGGGCAGCCGTTGGCTAATGGGCCCGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTCTTGGCTTCCGATCATTCGCGCCACATTACCGGTGCACAAATTGTGATTGATGGGGCGGAATCCTTATTGTTTTAGCACTAAAGAATTCTCTGTGAGGGAAAAATGTTTTGTGGTATCCTGAGTGTAACGTCCTGGTTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGAATCCACTTTCTATAATAGAAGTCAAGGGTGTATTCAAGCTTTTTTAGCATCGTTTTTTGCGAAAATGTATGGAATTGATATCAATAAGGTATGAATTACTGCATTTTCGCT # Right flank : CGTGGAGGGTGTAAGCGATTAGGCAGTTGCATTTAATTTGGGTATACGCCAAGAATCCTCAGAGGGAAGCCTCTGGGGATTTTTAAATGCTTGATTCAGCTTAACTATTGAATTTTTCTTTTAATTTATTTTTTTGGAGGGAAAGGAAAATAAATGTCGAAAAAGTAAAAGTAAATATATCTTTGTTCCTTTTTTATCAATATATTGGTAAATAGGTACTGGTTCAGAAGAACCGTTAAGTAGAGTGTATAGCCGACATTGAACAAAAGTATGGGCATATTCAGACGAACACCCCAACCATTGAATAAGGAGATTAAAACATGCAATATATTGCCCACATACGGGAAAGTGACCAAGAGATTCAGACGGTAGCAGATCACCTGTTGGAAACTCAACAGCTAGCAGAATCTTATGGAGACAAAATAGGTATCCGACATATTACCGGACTCGCTGGTATGCTGCATGATTTGGGCAAATACACAGAAAAGTTTCAAGATTAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1139679-1138660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1139678 30 100.0 36 .............................. ATGTGTATATCTAAACAATAATCATTTTGTGGAAAA 1139612 30 96.7 36 ...............A.............. TGACGTTGTTTCCTCAAAGCCCATTTTCGGAACCTG 1139546 30 100.0 36 .............................. TCCGTTTGGCTTCTAGCGATTCGCGCAAAATGACAG 1139480 30 100.0 36 .............................. ACTTCCGGCAATGGACTAAGCGCCATCGGCCGCACC 1139414 30 100.0 36 .............................. AGCATAAGGTACGTGACGCTGTAGGAGGCGTTTGGA 1139348 30 100.0 37 .............................. CAGCCTGTATAAACAAACCAACCGCCCGGGTCGTCAG 1139281 30 100.0 36 .............................. AAAGAAGAGCTGCGTAAACAGGAACGTCTCGCTACA 1139215 30 100.0 36 .............................. AACAATGTGACGCTAAAAGTGTAGCTAGAACGATGC 1139149 29 96.7 37 .........................-.... TCCGTGTAGCGGCGCTGTGTTGGCATCAATTTGGCGC 1139083 30 100.0 36 .............................. GGATTGACCGCAACTCCAACAGCAAGTCAAAGGGGA 1139017 30 96.7 36 ...................C.......... GGCTACATGAAACTGTCCGTTAAGTTAGTAAACTGG 1138951 30 100.0 34 .............................. TAGTAATAACGACTAGTACCGTTGAAGCTTTCAA 1138887 30 100.0 37 .............................. AAAGGAACGATAAGGTGACACATACGGAACATCCAGA 1138820 30 100.0 36 .............................. GTGGGATTTGATCCTCGGCTTGGTCTTCTTCTGGAT 1138754 30 100.0 36 .............................. TGGTGGAGTATTTATGTGGGTTATAAAAGACGAGAA 1138688 29 83.3 0 ..........C......A...-..CT.... | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.3 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : AACTGTTATGACAACGCCTGTATCGAATCCTTTCACAGCATTCTAAAGAAGGAACTGATTTACTTAGACCACTACAAAACCCGTCATGAGGCAAAGAAGCAGATTTTCGAATATATTACATGCTTTTATAATGGAAAACGAATCCACTCTTCCCTAGGTTATGTATCTCCAAATCAGTATGAACGGTTGTACCGAAAACCCGCTTGAAATTCTCGACTTTGGGTGTCCATTCTATTGACAGTAGTCCAAAGATGACAGGAGATTACGTCTTCGATGAGGAAATTATCGGTGTCGTATGAATGATTCCGAATCCTTATTGCTGTAATTTTCCCAACCGTCCTAAAAGGAGGACAGCATGTTAACCTTACAGCGACAAGGGTTTGAGGGGATTTGTTCCATTATTTTCAACAAACCCTCTTCGGTTGGGGAAATTTCGTGAAACCCTTACGGCTGTAGTAAAATAGGTATATCAGCATTTAAAAAACGTTGATTTTACTAGC # Right flank : ATTCTCAACCTGAAGGCACTGAAGTAGATTTTTTATCCATCCCCAGCATAAGATGTAATCAAATTACTGGAAATTCGCCACCTTCCTATATTATACTGAAAGAGTTTACAAACCGATGTTTGGAATACAGTGTTATGATATCCGGGACATGCCTTATACGAAAGATTGGACATGATTCGAAAACATGAGCTACGGCACAGAACCGTCATAAAGGAGAGCAACGATGTTTGTCATACGGGGAACACAAAAACTGCTGAAGGAATGGGATATCGAACCACTACAAGTTGATATTTATCCGCCTTTGAATAGTTGGCATGCCAACTTGTTTTTGCTTAATCGGAGAAAAAATATTGTGTTTATGCATGATGCATCCCGCTTGAGTGTCACACTGTTCGGAATCAAAAAGGCGCAGTACAAAAATCTACCAACTCTTTTCGTCCAAGCCTTGAAGGAGCTCATGCTCAGTGAGGGTTTTGATGAACAAATTGTAGAGGCGTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 1150434-1148954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1150433 30 100.0 35 .............................. TATACAGCAACAACATGATAAACATGCTTTTCGTC 1150368 30 100.0 37 .............................. AACGGAGTCATACTTCCAGCACGACCCTTTTTAATAT 1150301 30 100.0 37 .............................. CCATTAACCAATATCACCGGATAGCCTAAGCTATTAA 1150234 30 100.0 36 .............................. AGAACAAGGGAGTGAAGCAGCATGCGGCTGTTCGGA 1150168 30 100.0 37 .............................. ACTTTTTCAATCCCTACCGAAATACGCAATAACTTTA 1150101 30 100.0 36 .............................. TGAAATCACATCCCCTGGAGTATTAATGACCGCATA 1150035 30 100.0 36 .............................. CCGCAAAGCGCTGGAATCGGTGCTAAAGGAGAAACC 1149969 30 100.0 35 .............................. ACAACAAGAAATCGCAGAGCTGCGCAATGAGAATA 1149904 30 100.0 36 .............................. GGCTGTGTTGTCTGTAAGCACTGCGAGCATTGCCTT 1149838 30 100.0 36 .............................. TGGAAATGACCGCAGATTACCCGGAGGGAGTTGGAG 1149772 30 100.0 35 .............................. TTGGCGCTCCGTAGTCACACGCCCGCAGCTCCTTC 1149707 30 100.0 36 .............................. AAGCCCATAAGGAACATATTTACTTTACTCCTTTCT 1149641 30 100.0 36 .............................. TAAATTTTTTTGATCGCCCGCTCAATATCATTAAGC 1149575 30 100.0 35 .............................. CGTTAATGAATCTAACGCCTTTGTACTCAATCATG 1149510 30 100.0 36 .............................. ATTTTTTAGACTCCGCGCGAATGTCTTCCCAATCAC 1149444 30 96.7 36 ...............A.............. ATATGTAGGCCGACAGACATTAAAGCTCTTTTAAAA 1149378 30 100.0 36 .............................. TAAAGGTCTTTTCCTAATCTCATCTCTACCCTGCTG 1149312 30 100.0 36 .............................. CCAGGGCAGACCGTCAAGGGGCCCGAAGTTTTTTCT 1149246 30 100.0 36 .............................. TTTGCTCAATATTGTTGAAAGATGACTTTTCAAGGT 1149180 30 100.0 36 .............................. TCCGTAGTTACGCCCATCTGCATTCCAAGTTCCCTA 1149114 30 90.0 35 ......T..A........G........... GCGTATTCCATGCGCTATGACCTTCTTGTGTGTCG 1149049 30 86.7 37 GCA......T.................... TCGAAGCAAGTCTCTTTCTTGGTTATTGCATTAATTT 1148982 29 86.7 0 .................A.....C.-..G. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 98.3 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : ATCGTGGATATTTCAAATCAATAAATATTGCCTATTATTTTAAAATCGGTGTTTGCTTCTTTTTTGGTAAGTTTGGTATTAGGTTCAATTACTAATTGGCTCTTCAGAAAGAAGTAGCTCACAGCCATTAGCAAGAATATTTCCAAACAAAAAGAAAAGGAACATCGGATGTTATGGTTATAGTCTGTTTTCCAGCAGTTGTAAACTAGAATTAAAAATTTCAATACACCAAGTGTTTGATTTAATCATATGGAATTTTTTCATTGGTACATCTTACATTATACTCTCAGGTAAGCGATCCCAACATAGACCAAAGGTCTATGTTTTTTCCCAACCTCTTAAATGGCGTGAGACAGGGAAGTTCTTAGAACCGCAAGGGATACAGGCGTTTTTGTTTACATTTGGAAAGAAGCGACCTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTGCGATTTTAAAAAGCTTGATTTTACTAGC # Right flank : CCTAAGTAGCGGAGCGGGCAGAATTGTTCTGGAGAAGCGTAAGCGGTTGCCTTTATCCCCGGATTTTACCCTTTGAAGGGTTTAAACAATCCTAAAAATTCGGGGATAACAGCAATCGGAAGAACAATCTGCACGTGTAGCGGTCCAGGTACCATCGCAGCCAATCCTAAATTAGAATTAAAATGATGGTTTACAAATCATGGAGTGAGGTCTATACTCTATATCAAGTCAGGAGGTGAACACATTGTATTACGAAATTCAGATAACAACGTTAATGAAACAATCATCTCACCATCTGGAGATATCCGAGCGTATCGGAGCGTGGATGGGTCGGGCGGGGTTGAAGGACGAAGCGTTGAAGCAGACGCACTACGACAAGGACTACAAGCATTACACATTCGGATCGCCTTTTCCGCGTGAAAAGGAGGGGGTATACAAGCAAGGTCGTGTATACGTCATTACGATTCGCAGTTCCATAGAGCTTACGTTACGTCGAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 6 1154605-1153457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1154604 30 100.0 35 .............................. AGAAAACTTCTTCAATAACCTCCAGCCCTGTTCTA 1154539 30 100.0 36 .............................. TTACCAACAGCAGGCGCCAAAACGATGGCTGGATGA 1154473 30 100.0 36 .............................. AGCGCAGCCAGGCGCTGACAATCTTGCACGTTTTCG 1154407 30 100.0 36 .............................. TTCCTTTCCGAATTGCTGGTACTGGATGAAACCGTC 1154341 30 100.0 36 .............................. TCACCATGGGCTATCATTTCCTGCTGATCGGCACGC 1154275 30 100.0 36 .............................. TGGCGTTATTCTATTTACAAAGTGTCCGACAAATAA 1154209 30 100.0 36 .............................. ACAAGGGTCTTACCACCATACCGCAAATTCAACGAA 1154143 30 100.0 36 .............................. AACAATGCTACAGAGTGTCTATCGAACCCACACTTA 1154077 30 100.0 36 .............................. ATGGAACAGCGGGCGGTAGCCTGATCCACGAAAGAT 1154011 30 100.0 36 .............................. TTGTAATAGACAAGCCCCGCGTCCTGAAAAGCCTGT 1153945 30 100.0 35 .............................. TCGTAGGGCATCGTGGTCGAGCCGTCCTTAAACGT 1153880 30 100.0 35 .............................. TCGTAGGGCATCGTGGTCTAGCTGTCCTTAAACGT 1153815 30 100.0 35 .............................. AAGATACTTAATTGCTTGTACAGATCCCACGGAAT 1153750 30 96.7 36 .................T............ GCGATGAAACTAACGGCTAACTCATGGTCCTTTCGC 1153684 28 86.7 36 ....A..T.........--........... AAGCGATTGTGCGATATTTCGCATTTCGCTTTTTTA 1153620 30 90.0 37 ....A...TT.................... TACTGAGTGAGATTATAAAAGCTCATGTGGCCCGTAA 1153553 30 90.0 36 ....A...T.......T............. ATGCATGGCGGCGTACCATGATCTCTGATAACTTAC 1153487 30 86.7 0 ....A.T..............C.......C | T [1153461] ========== ====== ====== ====== ============================== ===================================== ================== 18 30 97.2 36 CTTTGACCACAACATGAGATGTATTGAAAT # Left flank : AACGTGTGGTGGTCAGTGATCTAACCTATGTCAAAGTCCGGAACGAGTGGCACTATATTTGTGTGCTCCTCGATCTGTTCAATCGAGAAATTATTGGCCATAGTGTTGGTCCCCATAAGGATGCAGCACTGGTTTCCCGCGCCTTTGCGACCGTGAAAGGCGATCTGAGTCAGATTCAGTGGTTTCATACCGACCGTGGGAGCGAGTTTAAAAATCAAAAGATGGATGAGCTTTTAGAGACATTTGAAATCGGTCGATCACTGAGTAAGAAAGGCTGTCCGTATGACAATGCCGTGGCCGAAGCCACTTATAAAATCATGAAAACAGAGTTCGTGAACCAGATGAACTTTCAGAGCCTTCGTCATCTGGAACTGGAATTATATGATTATGTCAACTGGTTTAACAAACATCGTATTCATGGAACTTTAGGCTATATGACGCCTATTCAGTATCGCCTTACAGCCCTTAAAAAAGTTGTTTGATTTACTGTTGACAATCCA # Right flank : ATCCCTTTTTGAACATTACACAATATGATGCTAAACTAAAAAGTGGACACCGAGAATCGAGAATGCGAGAATAAAATCAAACACATTCGAGGTGCTTCCCTATGAGTAAAAACTACGACAAGGCTTTTAAAGTTCAAACCGTTCAAATGATTCAAGAAGAAGGTAAACCTGTCTCTCAAGTAGCGAGAGAATTGGGCATCTCCGCGAACACGCTGTATCGTTGGGTAGCTGAACACAACCAAGATGGGAAACAGGCTTTCCCTGGCAGTGGGAACCTGAAGCCAGAGGATCAAGCCACAAGAGAACTCCACAAACGCATTCGTGATCTGGAAGAGGAGAACGATATTCTAAAAAAGGCGATGCACTACTTTGCCAAAGACCGACGCTGATCTTTTCTTTTATATATGATCACCGCTTCCAGTGTCGTGTTGCAAAGATGTGTGCGGTGTTTGGTGTTTCACGAAGCGGCTATTACAGATGGGTACAAACTCGAACGATTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 7 1157013-1155862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1157012 30 100.0 36 .............................. ACAGATTTAGTCTGAGACTTACCGGATAATACAGGT 1156946 30 100.0 36 .............................. TCGGATCGTAGCCATTAAGCGGCATCTTAGTGAGCA 1156880 30 100.0 36 .............................. AACAATCCCACAAAAGAAATTCATTACTCGTGTCAA 1156814 30 100.0 35 .............................. TGCAGAGAGTACCTATCGCGCAGCAAAAGAAGAAC 1156749 30 100.0 36 .............................. CCAACAAAGCCGCTGCCGCTCCTTGTTTAATCGCAC 1156683 30 100.0 35 .............................. ATTAGCCCTCTCATTCATCAAACGCCCACACAGAA 1156618 30 100.0 35 .............................. AAGTCACGGCTTTGCTACTGACATATTGCGTACTG 1156553 30 100.0 36 .............................. TCGGTGTGTATGTGAATGGTGTCCTCCGGCATAAAA 1156487 30 100.0 36 .............................. GTTATGAAATGCTGGAGAGCCGGGCACGGTGCGACT 1156421 30 100.0 36 .............................. TGGCGTAAGTGCTATAAGGAATACCGATCTGCTCAG 1156355 30 100.0 36 .............................. GCAGATAGCTGGTGAAATTAGTTCTAATTCTTCTGC 1156289 30 100.0 36 .............................. GACAGCGTGAAGCTTCCCCAGTCGTCCGAGTATCCA 1156223 30 100.0 36 .............................. ACAGACAGGTCACGGTGCGCTTTAAAGTTATGCGCC 1156157 30 100.0 36 .............................. CGTCCGAGGTTCATCATGGCCCGGTTGAAGTTGTAG 1156091 30 100.0 38 .............................. ATTTCAGCCTGTGCCTGTTCTTCGGTCAGGTCGTCCAA 1156023 30 100.0 36 .............................. TGGGTAATGATGGTGCCGTTTTTAGAGAAAGCGTCT 1155957 30 100.0 36 .............................. TATAATTAGTGAGATCAACAGGCTTATCAAATGTAT 1155891 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 100.0 36 CTTTGACCACAACATGAGATGTATTGAAAT # Left flank : CCATCGACCTTCGGCATCATCAGATCCACCAATACCAGATCGTAGGTGTGACGTTCAAAGGCAAGCAGCCCTTCTTCCCCGTCATAGGCGGTGGTTAATGTGTAGCCTTCCTTGGTGAGCGCTTTGTGCAGCATTTCGGCAATGGAAGTATCGTCTTCAATGAGTAGTATGTGTGGGTTCATAGGTGTGGAACACCCCTAATTTTTAGATTAAGCTCGTGTGACGAACTGTACCTGAATTATATAGAGCAGTGGAGTGAATTTCCATAAAAAATATCCAACGAATTGGAATAGGGGAATTTTCGAAGGAGGGTTAAAGGGCTGTTTTTTCCCAACCTCCAAAATAATGAAAAGTGGGAAACCCTAAGAGCAGCAAGGTCTACAGCCGTTTTTTATATGACAGGTGAGAAGTTGACTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTGTCAAAACTGAAAATCTTGATTCTACTAGCC # Right flank : ACTATTGACTAACCATCTCCCTCGCTTTAGACTTGCCTTTGGATCGGCTACACTAAGTTGGACAGAAAAAATAAGGGCTTGTAGAATAAACCTATCATGTTAAGGAGCGAATCTCTACAATGCCAAAACAACAACGACGTACCTTTACAGCAGAATTCAAAAAACAAATGGTGGGACTCTATGAAAATGGGAAATCCAGAGCAGCCCTTGTGGAGGAATATGGCCTCACAGCCTCAGCTTTAGATCGCTGGATCAAACAAGCTCAGGCGACGGGTTCCTTCAAAGAGAAGGACAATCGCTCATCAGAAGAAAATGAGCTGATCGCTTTGCAAAAAGAGAACCAGCGTCTGAAAATGGAAGTGGATATTTTAAAGCAAGCCGCGCTGATCATGGGACGAAAGTAGCTATCATCCAGAATAATCGTGATAAATACTCGGTATCAGCAATGTGTGACGTCCTGCAAATCGCAAGAAGTACATTTTATTATGATGCCCAAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 8 2066957-2066517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2066956 32 100.0 37 ................................ CTTATACCTTTGATGCGTTTCGTCACCGATAACTTTT 2066887 32 100.0 36 ................................ TTGCAGAGACAACGCCAATACATAGGATAACGAGAG 2066819 32 100.0 38 ................................ TCCTGATAGTCCTTGGTATAAAGCCAAGGATAGATTAC 2066749 32 100.0 36 ................................ TATTTGTATGAAAAACCGGACACAAAGGGGAGCCGG 2066681 32 100.0 34 ................................ TTACTGTCGAACGAGTCATCAAAAACATCTCTTG 2066615 32 96.9 35 .............A.................. GACAGGTGATTGACAGTAGCACTACCGATCTTATT 2066548 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 99.1 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCATAGACACCCGGACGCTGGAGGAAACCGATCATTTCATCATCATGAAACAATTTATGAACAACAAGGAAAAGATGATGCAGGAGCTATTCGAAGATCCCCAATAAGGAATGGGTGAACCTCAAGAGAGCTATCCGTACTCGTATACAACTTAGACTTTAGCTACAAGAAGGCGACCTATACGTTGGGCCAAGCAGATGAGATCGAAGTTTGTCTTTTGCCCAAACATTCACCGGATCTGCACCTCATTATTGGTTATCATGCTCATTTATGGTATATGTATAAGGGGAAATAAAATGAGTTTTCTGCTCTTATGGTGAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAACATTAAATCAGTTTTCTTCAGTAGAAGTCAATGGTTGATTCAAGCCTTTTTGGCATCGTTCTTTGCTAAAATGTATGGAATTTATATCATTAAGGTATGAATTACTGCATTTTCGCT # Right flank : AAGATCGTGCCCATAAATTATCAAGTCTATAATATGGGAGGGCTTTGACGTATTCTACGTTAGCAGCTCTCTCATTTTCTTTCAGCACATATAGAATATCAAGATCTATTTCTCATAGTATTCAACGTGTGCATTGATAGGAGGAAACACATGACCAAGATGATGAAATTTGCTTATAGTGTATACCTTGACGGGTATACTCCTTATAGAATATATTCGAAGCGAAAGGAGGCACATTATATGGGCGTGAGCATGAAAACTTTGAGTGCACTTGCCGAACCCAACCGATTATTACACATTGTCGAGCTTTTGCGTGACAGGCCCCTTACTGTAGGAGAAATAGCTGATCGACTTGGTGTTCGTCAGCCGCAAGTGTCTAAACATCTACGTATACTTAGTGATTCCGGGCTCGTTGAGGTACATCCAAGTGCGAATCGCCGCATCTATAAGCTGCTGTCACAGCCTTTCTTGGATATCTGGACGACTGGATTGGTTCCTTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 2253003-2253638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2253003 32 100.0 36 ................................ TCTTGCGTAATATCCGCACCACAAACCCACGCAATA 2253071 32 100.0 35 ................................ TCGCTTAAGATCAGCCCGACATCCAAGTCTTCATC 2253138 32 100.0 36 ................................ ACTTTCTGGAAGTTGGTACTCAGAAGGGCCTTTTAC 2253206 32 100.0 37 ................................ CTCGATTGTCTTGTCTTTTTCGTCTGTCAGCTGAAGC 2253275 32 100.0 34 ................................ ATTAAGCTATTCGGTCGACTCGATGGCCTTCGGC 2253341 32 100.0 34 ................................ GCGTCAATCATCATCGGATTCATTTTCTGGCTGG 2253407 32 100.0 32 ................................ TTGAGAGAGGCGCGGCAGGAATTGAATCATAC 2253471 32 100.0 37 ................................ CGCTTGTCTTCCTTGATAAACATTTCCAAGATAATAA 2253540 32 100.0 35 ................................ AATGTTACGTTAGACCCCGATAAACTAAGCACTGG 2253607 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.7 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TAACACGCCAAACCATCAGCGAGCATGTACATACGCAGCGTATTAAAACCGCCATCTACATGCTGACCGAATCCCGACTGACGATTCGTGAAATTTCAGAGTATGTGGGGTATAGTGATGTTTCCTATTTTCATCGGATATTCAAACGGCTGACAGGCTGCTCCCCATCCGAGTTTCTGGATGAACGGTCTTCGATCGTTTAGGCGTGACTTGTACAGTGGAAAGAGAAGGCAGAAAAAGACTGGAAAAAGTTGCGAAACTCCGTATTTAAATGTATGTTGGATTCAACTGGATAGACAACAAATACCTCATTTTATAAAGTGCGAATGTGAAGCTCACATAAAAACCCCGGTTCCTTCGCACCTCGAAATTTGTCGAAAAAGGCTTGGATGGGTTGTACTGGGTGAATGTCAATGCTTGATTCAAGCCTTTTCGGCATCGTTTATTGCGAAAATGTATGATATTGATACCATTAGGGTATAAATCACTGCATTTTCGCT # Right flank : TCAATTACCGCTGCCCCAGCGCTTCGCTCACAAGTCGCACTCTGTACGGAGTGCGTTTCTCACCCTCTTACTCTCCGCTTCCATCGCTTGTCCTTTCCATTTCCATATACATTAATATTCCAAACTTTACCTTTATACATTAGTTGCATAATATATTGACAGATGGTTAATTTTGGAGAACAATAGAATGAAAGAATATAAAATTATGGAATTTTTATGTGAAGGGTGGTTTATGTATGGAAATCACACCTACGATAAGAGCTGAATTGGAAAAATATCTAAAACAACAAGATTTAAGCATGACCGAGTTTGGGCATATTGCAGGCATTAATAGGGGGATAGTAAGTGGCATTGTAACTGGTAATAGTCCTATATCTGTTAACCAGCTTGACCGAATCACTGAGGCTATGGGTTTACCGGAAGGCTACTTCTACGACTTATATGTAGAAAACTACATCATCGAACGCTCCCCCAATATGCGTCGAATTGAGCGGTTGCTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 4561593-4561826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4561593 32 100.0 36 ................................ CAGATTGTTTATTGATCGTGAGCTGCATCATTACTT 4561661 32 100.0 33 ................................ CCTTTGAAGTTTGTAATCAGCAAGTTTACTTAA 4561726 32 90.6 37 ........T...G.A................. TTTGGAAGCTTTGGCTGCGCAATCGAATGAGTTTTTG 4561795 32 84.4 0 ........T...G.A........A.......G | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 93.8 36 GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Left flank : TCGTGCAGCTTATGTAGTGACCGAAAAACATACCAATAAAAATGAGTATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAACCTAGCAGTGATGATACCCTTTGGAAGGGAGAGTTATACAAAGATACACCAAGCCAATGGGGAATGGCTGTAGCGACAGGCGAATTGCATTATCAGGCAGTATGGGAGACAGAAGACACAGAAATTTTGCTTGATTTACATGGTGATAATTTCGAACCCGCCCTGAGTCTAGTGTATGACAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGAACAAGGCAAGGGACCCGGAACATTCGCACCTCGCGCCAGACAAGGGATAAAGCGATTTTGGGGTGTGATTTCTAACATTATTGGTGAGTTGAAAAGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTGGATAAGGCTTTGTAAGGCGTGCT # Right flank : GCACGTATTTCTCATACCACACATGTAGCACAGTTATGACGTTCCTCATTTTTCTTTGAAATAAAAAAGGTTTGCCTAAGAACTTGGCAAGCCTTTTTTATGTTGGTTATAAAATGCTAATAAACTCATGATGAACAACTTTTTTATAGATGTGGAACTGTTCGGACCACCGCCCTAAAAAGCTGAACACCAAAAAAGAAGCCCGTTTTAACACAGACTCCTTAATGTATTCCCACGCTAACATGCACAAATCACGCTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCCTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTCACTTCTTGTCGGTCATCACTACTTAGTTTGGATATCCTTGCTTGTGAAACACCGGATAGTTCTTCTAATTGTTTTTGAGTGATACCTTTTTCTTTGAGAACTTGCTTTAGCTTGATTCTGATTTTTAACATTTGGATTTCCTCCATATATCGTTGACAA # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 4565968-4566273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013203.1 Paenibacillus sp. IHB B 3084 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4565968 32 100.0 38 ................................ TGACCTTGGTACCTCAGATGGTCTGGCTAAAGCCCCCT 4566038 32 100.0 36 ................................ CGTATCGGTTAGCAAGCTTGAGGTTGTATACATTTT 4566106 32 100.0 36 ................................ ACTATCTTGGGATAGATAATAATAGCTTCTGCGCTG 4566174 32 100.0 37 ................................ GTATCAAAAGCGAGTAGCCAATTCCATGCAATTGTTA 4566243 31 87.5 0 .....................-A.......GC | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 97.5 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTTTCATCTTGTGCTAAGGGAAGCATTCCATCATTCACATAGGTAATTAAATCTTTTTTTACCGGATCGGTAGAGCAGGCTGCCAAAATGGAAAAGCAACATAATACCAACATAAATACGCTAAGTTTTTTCATCTGTATTCCCCTTTTATGTATGTTATGGGTAATTCGATGTGCCTTGTAGTCAAAAAGAACTATCCATATCATTTTATTATATCGTATAAATAAGAGAATGGTAGGGTTTTTATGGTAAAATAGTGTCGAAACTAAGTTGATTGATCTGTTCATTAAAAATAGGTAACCATATAGAAGCCGATTCGGTGCGAACCCCAAGCGCACATGAAAATCCCGGGTCCTTCGCACCTCGAAACTTGTCGAAAAGTGTTGGATTGGTTATCTATCCGTAAAAGTTAATAGTTGATCCAAGCTTATTGGGCATCAGTTTTTACGGTAATGTGTGGAATTGATATCGTTAGGGTATGAATTACTGCATTTTCGCT # Right flank : CACAGCGCTCAAAATAACTTTTTACGTGTTTTGCGAAAAGTACATTATGTGCGCTCAAGATGTGTGCTCAAGTTTTTTAGCTTGAAACTCAAAGAAGGCTCCCTTTTAATTAGGGGAGCCTTTTTCGTCGTGATTTTTAGGAAAGAAGAGTAGAGAGAGAAAAGTGTAGGAGGCGAGTACACATAGTTCCGAAACGGTGACTTAATTATCACGGATTACAAATAAGAATATTTTAAGAAGTATATTCCATTAGAACCAAAATTGTTTTATGATAGTGGTAGACAGCTTAGAAGTTTTCCAGATGTATCTGGAAATAACGGAAATTTAGTAAAACATTTGAGAGGGGATTTCAGTATGAATAGGTTCAGAAAGGCAACTTCGGTGCTGCTAAGCACGGTGCTCCTGCTTTCTTTCGGGATGACTGCGAACGCGAGTCAAAGCACAGAGGCTAAAACGGATCAAGCGATTAAAGCAGAGTCCAATGTTCAGCTAACAACCGA # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //