Array 1 510181-511737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJI01000002.1 Listeria monocytogenes strain FSL L7-0415 NODE_2_length_517187_cov_41.473391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 510181 36 100.0 30 .................................... TGGCTCGGAATCATCCCGAACTGGTCGGAT 510247 36 100.0 30 .................................... ATAAAGCAGTTGTAAAAGCTACTGAACGAT 510313 36 100.0 30 .................................... ATGACGTTTTCGCTTACAGTCATCATGGCA 510379 36 100.0 30 .................................... AACGAACAAATTAGCTTTACTAACCAAATT 510445 36 100.0 30 .................................... TTTCCCGGCAGTCGTCGTTACAATTAACAA 510511 36 100.0 30 .................................... CTTCTTTCATGTTTCAGTTGACTACTTACT 510577 36 100.0 30 .................................... GGAACACTTTATCTATTTCAGATATTTTTA 510643 36 100.0 30 .................................... TCAAACAAGGTCATTGGCTGCATATAGGCA 510709 36 100.0 30 .................................... ATTGTTGTCTGCGAGCGCCGTTGTGGTAGG 510775 36 100.0 30 .................................... CAAAGATGAGTCGAGTCAAGATTTGATACA 510841 36 100.0 30 .................................... TACACGGAAATCCGGAATTGCTGGAGGGAA 510907 36 100.0 30 .................................... TAATTCTTCACATTGATACAAATACATAGA 510973 36 100.0 30 .................................... TAATTGCCGCAAAAGAGAACGAAGCCGAGT 511039 36 100.0 30 .................................... TAGTTTTATGATGACTGCAAAAGATGCAGC 511105 36 100.0 30 .................................... ATTTGCAGCCCGACTGTCCTTCGTGCGCCA 511171 36 100.0 30 .................................... AACAGCAAACTGCCAATATATGTTGCCTCC 511237 36 100.0 30 .................................... TGAGGAAACAAAAGAATGGCTGATAGAAGT 511303 36 100.0 30 .................................... TGACGATGGGTCTGATAACACTGAAGAGCA 511369 36 100.0 30 .................................... AACAGGAAAAGAAAGATATGTGCGTGTTCA 511435 36 100.0 30 .................................... ATCGGATTTAGCTTATGAGATGACAGATAT 511501 36 100.0 30 .................................... TTTGTTGTCATACCAAGCTAGTTTAACACC 511567 36 97.2 30 .........................A.......... CCTTTGATATTTATTTCAACACACATGAAG 511633 36 100.0 30 .................................... CGAAAGTGATTTTGGTATCTCTGACAGTGG 511699 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [511724,511730,511733] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTAAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 171701-172828 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJI01000001.1 Listeria monocytogenes strain FSL L7-0415 NODE_1_length_1318109_cov_29.055953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 171701 29 100.0 35 ............................. GACAATGCATTTTCATAGCAACAACAAACGATAAC 171765 29 100.0 36 ............................. ACGGTTGAATTTGCTCCGTGCAGATTGTCATTTTGT 171830 29 100.0 36 ............................. TTGTTTATTTCCAACAAAAAAACACTTGCCGTTTTG 171895 29 100.0 35 ............................. AAGGAACTGTGCTTGTAGAATGCGGGCATCTCTTA 171959 29 100.0 36 ............................. GAATTCAGTCGCGTGTTATCCCAGACCGGAATACGT 172024 29 100.0 35 ............................. ATAGTTCCGGATTCACTTCCAAAATAGTTGATTCG 172088 29 100.0 36 ............................. AATTTTACATATCTAGCAATTAGCGGTTGAGTAGCA 172153 29 100.0 36 ............................. AGAATTTATAGTCAAGCAATTCACTGAGGGCTCAGT 172218 29 100.0 36 ............................. TTTTCCATCATTATCGCCCGCCAAGATAATTCGCTC 172283 29 100.0 35 ............................. CGCTATTTATTCCTTGAAAACGATAAAGGGTTACT 172347 29 100.0 36 ............................. AAGGCAGATTTCAAAACAACGCCTGTGCAGATGTAC 172412 29 100.0 37 ............................. CTGCTTGCTAAGCCTCTAAATGCCATTACCAAACCAG 172478 29 100.0 35 ............................. GAATATGCCTCAATAAATTTTCCAACTTCGAGAAT 172542 29 100.0 34 ............................. GAGTTAGTTGGCCAGAACTGTATAGGAGCGGTAG 172605 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 172670 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 172735 29 93.1 37 ..C...........A.............. AATCGTCACGATGTGAAAGTCATTGATAGCGCGCCAC 172801 28 79.3 0 A.....A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 98.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCTACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //