Array 1 85696-88567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFAZ010000004.1 Streptococcus uberis strain GCPRG124 Contig_4_197.685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85696 36 100.0 30 .................................... AGGTTACTCATTTCGCTGTCTATCCACTCT 85762 36 100.0 30 .................................... TAGTCGTGAGTATGGCACAGCACAAAACAC 85828 36 100.0 30 .................................... TCTCTCCCAGTTATCTGTAATAGGCATTTC 85894 36 100.0 30 .................................... CACGGAATGCTAATAGTGAGTGAATCAAAA 85960 36 100.0 30 .................................... CATATTTATCTTACACTTGTCTAAAATGCC 86026 36 100.0 30 .................................... CACTCAGACAAGCAAAATGATTTATGATGT 86092 36 100.0 30 .................................... TGGATGTTTGATTATGATGATGACAAGTCT 86158 36 100.0 30 .................................... CTTGCTCTTGTAAGTTCTCCAGCTTTCTGT 86224 36 100.0 30 .................................... AGAATACCAATTGCTACAGCGCTCTCTACT 86290 36 100.0 30 .................................... AGCGTAGACATGAAGAGTTTGAATTGCAGG 86356 36 100.0 30 .................................... CAAACACAACAGCCCAAATATTCTGGTTGA 86422 36 100.0 30 .................................... ATTACCAGATGCAACAGGCAATACGCACTA 86488 36 100.0 30 .................................... CAAGTTGAACTAATTCACCCTCTCCTTGTA 86554 36 100.0 30 .................................... ACAATTGAACAAGTAGACGGAACAAGTTCT 86620 36 100.0 30 .................................... TTTCTAAAAAGAACAAGAATAAGAAAAATA 86686 36 100.0 30 .................................... CATGAGCCTGAAATGTATCTGCAAGACGCA 86752 36 100.0 30 .................................... CATGAGCCTGAAATGTATCTGCAAGACGCA 86818 36 100.0 30 .................................... CAGAAAAGAAGATGGAGAACCCCAATTTAA 86884 36 100.0 30 .................................... CAGAGGGACGGAAAGCCGGTCAACAATTAC 86950 36 100.0 29 .................................... ATGCAACTTGAAATCGATAAGCTTAAAGC 87015 36 100.0 30 .................................... CTAAATAATTAACTTGATTAACTTTATCAG 87081 36 100.0 30 .................................... GTTGATGATGAATATATTTACGAATTAGCA 87147 36 100.0 30 .................................... TCTTTATCAGTCGTAAACGTATGTACATCT 87213 36 100.0 30 .................................... CTCTGTTCATAAGACCCCTCAATTTATGGT 87279 36 100.0 30 .................................... AAAAACGATTGAATGGCACAAAGACGAGGA 87345 36 100.0 30 .................................... AGTTGAGTACAGGTTTAAGCTCTGGTTTCA 87411 36 97.2 29 ..............................A..... ATCGAACACTAATAAATACTAACTAACAA 87476 36 100.0 30 .................................... TGAATTACTTTGGTTAGTGAATCAAGTAAA 87542 36 100.0 30 .................................... TCTATAAGTGGCTGGAAAGCATGGGTAATG 87608 36 100.0 30 .................................... GATGATCTAATCGCAAATAAAATTTCTCTT 87674 36 100.0 30 .................................... ATTTCTGTGCTTTCGACATCTATTTGACCG 87740 36 100.0 30 .................................... AACACGCATTTGATTAATATCAAGACCAGC 87806 36 100.0 30 .................................... TCTTTCCTTCTTTAGTTTTTCTATTGCTCG 87872 36 100.0 30 .................................... ACAGGGACATTTGTACCATATAGATCTATT 87938 36 100.0 30 .................................... AAGCAAGCGATAATTCCAAATAGATTTATC 88004 36 100.0 30 .................................... AATGATGGAGCTTGCGCTTGTGCAGGTGCC 88070 36 100.0 30 .................................... GGTGAGAAATCTCATACGCTCTCAATTCAA 88136 36 100.0 30 .................................... ATAGTAACCCAGACAACCCAAACCACTGGC 88202 36 100.0 30 .................................... TTTATCTTCTTCAACATGCTTGGTTGATTA 88268 36 100.0 30 .................................... TTTCTCAATTGCTACTGTGTTGTCTGGCAT 88334 36 100.0 30 .................................... ATGATTTAAAAATTGCATTAAGAATAATTA 88400 36 100.0 30 .................................... CTTTGACACAGTATGAATTATCTGCGATGA 88466 36 100.0 30 .................................... TGATTAAGTACATCATTAGAGGCGAGAGAG 88532 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : TAGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCTTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGGTGCTTTAAACCCTATTAAAATAAGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //