Array 1 196006-196153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083623.1 Bacteroides fragilis strain FDAARGOS_1512 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 196006 26 96.2 35 ...................T...... CATGATAAAGGTACATAACTCAAGCCACAAAAAGC 196067 26 100.0 35 .......................... CCTTGCTTATCAAACAAATACTTAGTATTTTTGTT 196128 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 36 TCAAATTCACAATATATTGGGAATTT # Left flank : TACCGACACCGGGGAAGTAAACTCCATACTCAGGCTGTCGGACTATGGGAGGAAGGGAACGACGGTATGGAAACTGATTGCCAACACTTGCTGGAGCGACATCGGAGCCAAAGGAAGATACCTGATAGCGGCGCTAAACAAGACGAAAAGAAGGTAGCAGAGAGTGTCAGTCCCCTATTTGTAGTTGACAAAAAAGCAAGTATACAGGCTTTTGACCAGAAAAGGATTCAGTGAAACAAAGAAGTAAAAAGTGTGCTTAACGAACTAAAACACAGTGTTTTTAAAGCACAAGATTTCTCTCGCCCAAAGCTTTGTTTTAACGCTACGTTAAAGCTTGTTCTTTAAATGCAAATAGCAAGTGTTTTCAATGCAAAAGGCTTGTTATTTGCACACAAGAATAAAATAACGGAGAAATGGAGTTAACAATGTTAATTGAGAAACACTCTACAAACAAAAAGAAATCTCTGTCATTCTAAAATCAAAAGTACAAATAGCCGTAA # Right flank : TGAAACAAATTGGAATACAGATTCGCCAACGAAGAAAAATGTTGGGTATAAATCAGCAAACACTTGCCGATTTAGCACAAATCAGTATCAATACTATAACAAAAATTGAAAATGGAGAAATAAATATTAATTTTCAAAAGCTCTATGCCATATTGGAGGTATTAGGATTAGAACTTTCTCTGAAAATTAAAAATAAGGAGGGACATCTATGAGACAAGGAGTCGTATACTTGAATAAAGAACGGGTAGGCATTATTACGGAATTATCTTCTAACGAATATAAATTTCGCTATGATGACGAATATTTCAATGATCCATCAAAGCCCTCCATAAGCCTGACATTGACAAAACAACAACAGGAATATACTTCCCATTATCTATTTCCTTTTTTTGCCAACATGCTGTCAGAAGGGCACAACCGCATCGTTCAGGCAAGATTATTGCAGATTGATGAAAAAGATGATTTTGGTATTTTATTAGCTACAGCACATACCGACACGG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAATTCACAATATATTGGGAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1632157-1630119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083623.1 Bacteroides fragilis strain FDAARGOS_1512 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1632156 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1632079 47 100.0 29 ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 1632003 47 100.0 30 ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 1631926 47 100.0 30 ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 1631849 47 100.0 30 ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 1631772 47 100.0 29 ............................................... AGAACCATCACGAATCAGATTCCAATACT 1631696 47 100.0 30 ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 1631619 47 100.0 29 ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 1631543 47 100.0 30 ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 1631466 47 100.0 30 ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 1631389 47 100.0 30 ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 1631312 47 100.0 30 ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 1631235 47 100.0 30 ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 1631158 47 100.0 29 ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 1631082 47 100.0 30 ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 1631005 47 100.0 29 ............................................... TAAGGATAGGAATATTCAATCTTATACAG 1630929 47 100.0 29 ............................................... GCATAAAGAACTGGCATATTACCACTGAC 1630853 47 100.0 29 ............................................... AACAGAACTATCAGACACTATCTCTGAGT 1630777 47 100.0 30 ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTA 1630700 47 100.0 30 ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 1630623 47 100.0 30 ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 1630546 47 100.0 30 ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 1630469 47 100.0 29 ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 1630393 47 100.0 29 ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 1630317 47 100.0 29 ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 1630241 47 100.0 29 ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 1630165 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : TTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 3294781-3295324 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083623.1 Bacteroides fragilis strain FDAARGOS_1512 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3294781 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 3294844 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 3294909 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 3294975 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 3295038 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 3295101 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 3295166 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 3295229 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 3295295 29 93.1 0 .........................G.C. | A [3295319] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //