Array 1 39774-40230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39774 29 100.0 32 ............................. CTGGAGCGCGTCACGCGAGCTGCACCATCGGC 39835 29 100.0 33 ............................. CTGCTCAAGCACGTCTGCGACGCCGGGAACAAG 39897 29 100.0 32 ............................. GACCATGACCGTGACCACCGAGCAGACCCCCG 39958 29 100.0 32 ............................. GTCGAGGTGACGCTCAGGAAGTTGCTGTACTC 40019 29 100.0 32 ............................. AACGGCATCCAGATCGTCGGCAGCCAGGGCGC 40080 29 96.6 32 ..........................T.. AGCCAGACCCTCCGGGACATCGCTGCTGCTCT 40141 29 93.1 32 .......T......T.............. GTGCAGCAGACCCAGACCGCGTATCCGAACGT 40202 29 86.2 0 .................A.......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.0 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGGCCTCTGGTCTCCGCAGAGGTACTGGCGGCGGACCCGGACTGGGAGGGCCCGCCGCTGCGCAACGAATCGGTCGGCGCGAAAGTCCTCGGATACGGCCTCTTCGTGGCCGGCCTCGTGGCGGTCGGAAAGCTGCTCTCTCTCATGAGCTTGCCTGAGCCGCTCACATGGCTCCTCCTCGGCCTCATGGCCAGCGCCGGTCACGGTGCACTGAAGCACTGGCTGCCCGTGCCGGCCCTCCCGACGGAACTGCTCTCCGGCCCTACGGCCACTCCGCCGCACCCCGAACCCGCCGCCGACCGCGCGGGCGCAGGACAGCTCCGGTGATCACCGATCGGGGGACTTGGTGGCCGAACGGCGAGAAGCACCGGAGTACCGTCGGCCTTTCATTCCCTAGTGGGGGCGGCTGGTGCCGCATGGGTACTATGTCGCGATTGCCTGATTCAGTCAAAGTGCTTACGAACGGCCTTCTGCTCGCTTAAAATCCCAGGTCACGAAGC # Right flank : GCCACCGCGCCCCTACAGCCGTTGCACCCCCGCTTCGGGGCCGGCCTCGAAGCGGGGCTCGGTTCCTAGCCTGGTGGGATGACGAGGACACCACCGAGCCAGGCCGATCGGCGGCTCATCCAAGCGTGCCATGACCGTGAGATCCCGCTGAAGGCGTCCCGGCTCGAGGCCTGGCGGACGCATGGTCTGATGCGCCCGCCCGAAGCCGTCTTCCTGGGCGGCCGCCGCGGGTCCCAGCGCGTCTATCCGCCCGGGACCCTGCTGCAGGTCCTCTGCCTGGCCGCCGTGTGCGACCAGCTCCAGCCGCGGATGCCCCCCGAAGACTTGATCCTCCTCGCCTTCTTCGCCGAGATGCCCCTCCCCTCTCTTCCGGGCCGGCCACTCAGGGTCGCCCTCGCCAGGGCGTACTTCGGCGCGCGCTTCCAGAGGCAGGCCGAGGAGCAGCGCGCGTACGAGGGGGTGCCCGGTGAGTGGCGGGACGAGGTGCAGGCCGACTACAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52826-53465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52826 29 100.0 32 ............................. CTCGAAGGTGAGCGCGTGAAGACCCTGGCCGC 52887 29 100.0 32 ............................. GGGTACGCCTGCATCAACCCCGCCCAAGACGG 52948 29 100.0 32 ............................. GCGCCCTTGGACCGCCGGGCTGCGACGGTGCG 53009 29 100.0 32 ............................. CGCACCCCGGTACACGTGCCACTCAGCCGCTA 53070 29 100.0 32 ............................. ATCATGGCCACGACTGAAGAGCGCCTGCGGGA 53131 29 100.0 33 ............................. CGACGTCGCCCGCTCGGGGTACGCCGCTTCGAG 53193 29 100.0 32 ............................. TTCGCGTCTTCCTCGAACAGGCCGGTGTCCTC 53254 29 100.0 32 ............................. ACCCACCGGAAGGCCCGACGATGACCGACCGC 53315 29 93.1 33 ............T...............T GTCCAGCAAACGCAAACGGCTTATCCCAACTGT 53377 29 89.7 32 .............G..T.........T.. AAGGCCCAGTCGGCGGCCATCAAGTGCCTGCT 53438 28 82.8 0 .....-......TG..........G...A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GAGCCGCAGGTAGTAGTCGCTCTCCGGGGTGGCCGTCTGGAGTCTGCGGACGATCTCGACGAGCTCGTCCCGGGTGATGTCCGCAACCATGGGGCGGGCTGGCCGGGCCGCCTCCCTCACGAACTCCTCCATGCTCCTACAGCTCAATGCTAGGGCCGTCCTCGTGCGGCGGCCCGAGCGGCTGCTCTGGGGCGGTTCGCTGTTCTCCGTGGCGATATGCCGGGCCCTCCGCCGTCTTGAGAGAAGTCGCTGAGCCTGACGTGGCTGAACCAGTCCTGCCTGGAGTTGGGCGGCTCCGCGGCTCGTGCACGGCGCCCGGGGCCGGTCGTCGACCGGTTCCTGTGATCCGGCTTGCCTCGCCGGCTGGCAGCCTGGGTGCCGCACCCTCTTACCTCTCTGCTCAACGACTGACGCCATTGGATGCTATGCCGCAATTGCCGGATTCGCTTAAAGTGCCTGCTAACCCTCCACATCCCGCCTAGAATCCCAGGTCACGAAGC # Right flank : AGGGAAAGCCAACGGTCGGTCACCCGCCACGACGTCGGCGAGACCGGCAAACGCCCTGAGCCCCCAAGGCCATCGGCAGGCCTGACAGATCCTGGTGGACGACGAACAAAGTCAGCCGGTGCGGCCCGCGGCGGAGAGGACGGGGTCGGTCGGTTCGAGGGCCAGGTAACTCTCGGCCGTGGCGGCTTCGAGGAGCAGGGGCTTGTCCGGGTTGTCCACGCGTACGGGAAGGGGCGAGCCCGTGAGCCAGCTGCCCTCCGGGTGTTCCTCGGCCTGCCGGAAGGCCGTGCTCACCGCCTCACGAACGCGCGTCCGGTACCGCTGCTCCTGCTCGTAGTGGGCTTGGCGAGCCCGGCGCGCGTACTGCTCGCGGACCTCGTCGTCGTCCTGGTTCTGATCGACGAGGGGGCCGTTCAGGCGGGGGCCGTCCGTGAGGTCCACGGTGTCGGGCATGTCGGTCTGCTGGAGGTGGAGGGCCGCACAGGCCGCGTAGAGGCGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 75661-74779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75660 29 100.0 32 ............................. ACCCGTGTCTCACGTGGCTCACTGGTCCCGGT 75599 29 100.0 32 ............................. AACGGCTGGAAGGCGCCGCTCGGCAGGGCCAG 75538 29 100.0 32 ............................. TCGATGAACTCGGGGGAGACGCCGAAGAACGA 75477 29 100.0 32 ............................. TCCCGCCGAGATCACCAATCCACCGAGAGCTA 75416 29 100.0 32 ............................. CAGGCCAACTTCGACGGGAACACGGTCTTCTA 75355 29 100.0 32 ............................. GCGAGCTATACCCGTACAGAGCTGGAGAGTGT 75294 29 100.0 32 ............................. GTGGAGGCCGCGAACGACAAGCTTGCCGCGCA 75233 29 100.0 32 ............................. GTCTCAATACAGATCATGCCTCTTGACCGGCC 75172 29 100.0 32 ............................. GGGACCCTGATCGCCAGGTGGACCCGGACCGG 75111 29 96.6 30 ............................G GCGCGGCTGAAGAAGGAGAACGACGAGCTG 75052 29 100.0 32 ............................. CCGGACCCGGTGTTCGTGCAGCCGTTGCCCAT 74991 29 100.0 32 ............................. GCGGGCTGGGGGGCCGTGGAGAAGTACAAGGG 74930 29 100.0 32 ............................. CACTGAGCGTCACACAGCGATTGCGGTGAGGG 74869 29 100.0 32 ............................. TCCCACGGGCTGCGGAATCTGGCGGTGGCGGC 74808 29 96.6 0 ........................C.... | G [74787] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGGCCCACCGCGGGGTCGAACACCGCCTTCGGGCCCTTGGCGTGCGTCCACGCCCCGCCCGTGCGGGAAGGTACGGAACCGCTGGTTCCACGGGCCGTCCTCGTAGGGCGGTAGCACGGAGGCGGCGTCCCGGATCTCCCACACGTGGACGTAAAGCTGCCGGCCTGCCGCCGCTCCGTGTACCGCTTGACCACCGACGGGTCACCGATGCCGAGCTGCACGGCCAGGCGCTCGACCACCGGCCACGGCACCGCGAGCAGGCCCTCCAGGAACAGCCCGACGTACCGCACCATGCACATCTGGGGCGCGAACCCCAGCAGCAAAGTGGATGACTGCGCCAGGCAACCATGATCGTTCTCGCCGATGCCCACGGTACTGGTGTTCCCCGAGGCCGCTCTACCCAACGGACTTCGGAGCTGGCAGAAATGCCCCATAAGCCCGATTCTCTGTAAGTGTTTCAAAATGAAGGGTGGCCCGCCTAAAGTGGCAGGTCACCGAGC # Right flank : CACAATCTCGCGGGCCGAGGCCGATTCCAGCGCGTACTCTCGGCTCTGGCGGTCCACGCAAAGGCCTAGGAATCTGTCAGGGCGGTCAGCTCAGCGCCTTCTCGATGGCTTCGAAGATGTCGGCATCGGTCTCCTGCTGCCACGACGGGAGGTCGGGCCAGTCAGCCACGTAGCCTGGCTTCGGGTCCTCGAAGTGCTCGAACATCTGGGCGGTCCAGCACGTCGCGACGAAGCGGCTCTTCTGCTCGCGGGTCAGCCGGGACGTGGCGCCACCGCTGATCTCGATGAACTGACGGACCTGCTCATACACAGAGCCCGCGGCCTTCCGCTCCCACTGCGGCGTGTCCGCCCACGGGGTCACGTAGCCGGCCTTCGGCTCGCCGGGAAAATGCTGATGCACCCCCGCGATCCAGGCTTCGCGGAACAGTCGTGCACCTTCGGTCTGCGACATCCCAACCCCTCTCATCACGGCGTCCTCAGTGTGGCGATCTCCGCCCCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 91299-91076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 91298 29 100.0 32 ............................. CCGGTCAGGGAGTCGGCGCCGAGCCGGGCGGC 91237 29 100.0 32 ............................. CTCTCGTTCGCAAGAACCTTCGGGGTGCCCAG 91176 29 96.6 43 ........................C.... CTGGCGAACGACGCTGCTCGACTGCTCATGGGCTGGGCCACCG 91104 29 93.1 0 ...........A..T.............. | ========== ====== ====== ====== ============================= =========================================== ================== 4 29 97.4 36 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : ATCGTCGCCGTGCTGCCGGCGCTCGCTCTGCTCACACTCGGCGTCCTCACCCGGTCGATGCCGGGTGAGCGCACTCGCAGGCCGGCTCGCCAACATCTCGGCGACCGGTGATCAGCTCCCAGCGAGCCCACCCACCATCCGCTACCGGGAGCTGGACCCCACCTGGAACTTCGATTTCGATGACCACGACGAAATGACCCGCCGACTGCCCCGCTTGGCAGCTCTCGATCTGGAGTAAGCGGAAGCTCGCATTCACAAGACGAGGTCCAACAGCAGAGAACGAGACTCCCGGATCACTGTCGGTCATCTCATCGGACCATGCACACGCCTCGGCTGACGAATACGCGACACCTCAACATGCGCGCCTACCAGTCCTGAGGCCGAACAGCCCTGGCCCTACCCACCAGAGTTCGGAACTGGCTGAAATGCCCGACAAGCCCGATTCTCTGCAAGTGCTTCAAAATGAAGCGTGCCCCATCTAAAGTGGCAGCTCACCGAGC # Right flank : ATCGGTTCCCTGATCGTGAGCAAGATCAAGAGCTGCCCCCCGGCAGCCGCGGGGATCCCGGCCCTGAACTCGTGAGGGCTCAGGGCCAGTGCACCTCGCGTACGAACCGTGGCAAGACCCGAGCGCACCGGGTGCCGCAGCTGTTGCCCGGCGTCGCGGACGTGCAGGTGGCGGGGAGGGAGGTCGCCGAGTGCGGCGGGGACGTGGGAGACGTGGAACTCGTACAGCTCTACGAGGCGCCAAGGTCTCCGACGGTGTCCGGCTCCCGCCCGTCCGGTTGCCGTTGGCAGTACGTCCAGGGAGTGAGCGGCGAGGCCGAGATGGCCTCTCGGCCTGTCGAATATCCCAGGTCGATCCGCGCGGCCTGGTCGAAGGAGAAGTCGACTTCTACGAGCCGCACGGCAGCAGCCAGTGCCTCAGGCAGCTCGGAGAGCAATAGCGGTTGTGTGGGCACGCCGTATCGGCTGTAGCGGTCGTCGTGCTCCTCGTCCCAGGTGAAC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 100390-100115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100389 29 100.0 32 ............................. GAGACCGGCGCCGCGTGGCTGCGCCCGGGTGC 100328 29 100.0 33 ............................. TGCGCCTTGTCGCGGGCGGCCTTGTCGCGGATG 100266 29 100.0 32 ............................. CACGACGACAACATGCTCCTCGGCTCCACGGG 100205 29 100.0 32 ............................. ACGGGCTCCGGCAAGACCACCCTTGCCCAGCA 100144 29 89.7 0 .........C............C.....G | G [100119] ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGAGCCATCCCAGTGGAGGGCCATCAACGCCCTGGCCAAGCGCGCAGGCCTCCCCCAGCGCAAGGTGGGCCCGCACGCGGTCAAGCACACCACCATCACCCACGCCCTGGCCCGGCCGGGCGCCCGGCGCGACAGGATCCAGCACTGGGCCGACCACAAGGACCCCCGAACCACCGACCGGTACAACCGACGCAGGGGTGCGCTTGACGGCAGCCCCGGGTACGAGGCCAGCGCCGATCTCGCGGAGGAACTCGGCAACTCCGACTACAGGAGTGAATAGCTGCACGGGACCGGATGTGGTGCTGAGTCGCGGACCGGCAGGCTCGTGGCGGCCCACCGTCTGGCCTCGACTCATGCGCGATCCCATGAGCGGCCACCCGGTCAATATCCCTGCCCCTACCCAGCAGAGTTCAGAACTGACTGAAATGCCTGACAAGCCCGATTCTATGCAAGTGCTTCAAAATGAAGCCTGGTCCATCTAAAGTGGCAGGTCACCGAGC # Right flank : AACAGCCAGTCAACTGGCCCGTATCCCAGCCTGCCCGCCCCTACTCTGGGAATCCCAGGCCGCGAAGACGGAGAGGACCCGGTGCGCACGCGAAGGCAACTGCTCGCGAACCTGGCGGTCACCGCGGCCGCCGCCATGGGAGCCCCTGTCGCCGGCGCCACCCCGGCCAAAACCGAGGAAGCGCAACTCGGCGAGACGCTCGTCGCAGGGCTGCGCGACGCCATGCTGGGACTCGGCCGCACAGCCCCCGACGCGCCCCTGGACCTCCTCGCGGCGGAACTGCACCGCGCCTCAGCCGACTTCAACGACTGCGCGTACTCCAGCCTCGCCCTACGGCTCCCACGCCTGATCTCCGCCGGGCACCAGTCCACCAGCGCCAGCGACACCTTCCCCGTGCTGGCGCAGGCCTACCTCCTCGCGACGCGCATCCTCATCAAACTCCACGAGCCGCAACTCGGCTGGATGGCAGCCGACCGCGCCCGGCAGTTCGCCGCCGCCAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 126508-125504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFT01000022.1 Streptomyces xanthophaeus strain NRRL B-5414 contig16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126507 29 100.0 32 ............................. CATGACGGGTCCACGCTGATGGACGACTGGCT 126446 29 100.0 32 ............................. GCAGAGCTGAAGCGGGAACTGGAAGAGCTGAA 126385 29 100.0 32 ............................. GCCCGGGTAGCCGAAGACCGCAACCTCGCCTC 126324 29 100.0 32 ............................. TCGACGACGGTGTGCCCATGATGTGGCTGGAC 126263 29 100.0 32 ............................. CGGCCAGCCTGAACGCCGATTCAGCCACCCTC 126202 29 100.0 32 ............................. GCGGACCGCTGGTCAATGAGCAGGACCAGCGT 126141 29 100.0 32 ............................. GCCGCGACCGGCGGCGGCGGCTGGGCAGCGAA 126080 29 100.0 32 ............................. AAGCAGTAGGAGGAGAGATCATGGGATACGCG 126019 29 100.0 32 ............................. TTCAAGCTCGAAGAGGAAACGAAGGACATCGA 125958 29 100.0 32 ............................. ATCTGGGAGGCGAAGGGTTCGAGGGCGGCGTC 125897 29 100.0 32 ............................. GTGACCATGTCCGACGTCCGGGCCCGCGTGGC 125836 29 100.0 32 ............................. GCGTCCGACCGGCCCCGCTGCTGTCGCCCTCT 125775 29 100.0 32 ............................. AACTTGGCGTCGGGGTCGAAGGGTGCGCTGAG 125714 29 100.0 32 ............................. CTGGAGGTGGCAGCGTGACCCGACCGACCGCA 125653 29 100.0 32 ............................. GAGCCGACCGCCCAGGCAGTTATTCGGGCCCT 125592 29 89.7 32 ............T............A..T GAGGAGACTGGTGACGGCCGGATCTTCGCCGT 125531 28 86.2 0 ..............T.........-.G.T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CCCGCCGGACTGCCGCGCTCGCGGGGGAACAGGGAGACCGCATCCAGCGTCTCGGCCAGCGCGCAGCCGCAGAGCTGCAAAGGCGGGACCAACTCCCATTCGCCCAGCGCGAGCAAGAGGCCGGCATCCGACACCAGATGCAGCCCCTCGCCGAGCCCCGCCCCCCGGCGAGCCCAGTGCCGACTCCCAGGATCGAACCGCCAAAGGGGCAAGCCCAAGCCCGCGGCCGATCTCTTTGACCCGCACGCCGCGGAGCGGCTCGTACGCATCGCGATCCGAACGGGACGGCTCTCGCCGGACGAATCCGGCGACTGCCCGCCTCCCTAAGACGTAGCGCTGTGCCGAAACATCGTGCGGTCCGTGCGCCACACAGTCGCAGACGGCAGGGCGAGCAACTGCGCGGCAATGGATCGCATTCACCAGATATGACCGAAAGGCGAGTATCAGCGGAAGTGCTTCAGAACAACGTGTAACCCATCTAAAGTGGCTGCTCAGCAAGC # Right flank : GACCGTGTCGGTTGGTCAGGCTGCTGCCTCGTGCCGCGGCGGGGAACCGTGTTCGAGGCGGCCCACGGCGGAATTGATCAGCCCCGAACCACCCGCCGGGAGTCCGGCGCACCGTCCCACCAGGCAATATTTGGCATACTTATTGTCGAAACCTCCTACAGTGAATGGGACTTGGTGACGTCGTCGCGCACGGAGGTTGTTTGTGCTGGATCTGCCGTTCGATCAGCCCGGCCGGTTCTGGCGCGGCAATCTGCACACCCACTCGGACGAGTCCGACGGTGCGCTGTCCCCGGCGGACGTGGTGCGTCGCTACCGGGAGGCCGGTTACGACTTCCTGGCCGTCACCGACCACTTCCGGGCCGAGTACGGCTTTCCCCTGACGGACACCCGGCCCCTGCGCAGCCCAGACTTCACCACGCTCCTCGGGGCCGAGCTGCACGCCCCGCGCACCGAGGCCGGGCCGAAGTGGCACATCGTGGCCGTCGGGCTGCCGCTCGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //