Array 1 311610-307434 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPU01000003.1 Moraxella catarrhalis strain NCTC3622, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 311609 28 100.0 32 ............................ GATTAATCGGCTAGATAGTGAATTAGCTGGCG 311549 28 100.0 32 ............................ GTTTATTTATGAGATAGGCTCAAGATTGGGCG 311489 28 100.0 32 ............................ ACAAAAAACCCAACCGAGCAAATCAAAGCATT 311429 28 100.0 32 ............................ AGTCGCTCAGTAGCGAGTTAAGTTAAGTTAAG 311369 28 100.0 32 ............................ CAGATAACTTCCCCATCATCATTGCCAAATTG 311309 28 100.0 32 ............................ ACATTACACCTCTTCTCAGACGGAAATAATTA 311249 28 100.0 32 ............................ TCTTTGTCTGAGTCTCTCTCTAACCATGTGCC 311189 28 100.0 33 ............................ TTATTGATTATTACATTTCAGCGTTGAGATTGC 311128 28 100.0 33 ............................ ACAATCGAACAAAAAATTAAATATACAGTTTTA 311067 28 100.0 33 ............................ TCTTCTAGTTCTTCATCTAAAAGAACTTCTTCT 311006 28 100.0 32 ............................ ACCTTTAAAAGGTTCAGCTGTTAGCTTATCAT 310946 28 100.0 33 ............................ GTTTAAATACACTCCTGTTGGTATAGTTATGCC 310885 28 100.0 32 ............................ AAATCAGACGGCAACACACCGCCGTCAGGGTG 310825 28 100.0 32 ............................ TTTCTCTCCTATAGAGTTTAATAATTAAAGTT 310765 28 100.0 33 ............................ ATTATTCAGTGTTTCGCTAATGCGGTAAGTTGC 310704 28 100.0 31 ............................ CTTATATCATCAGTGTCTTCTAGAATTTCTA 310645 28 100.0 32 ............................ TTAAATAGTCTGACAGAGCAGGGCAAATATTA 310585 28 100.0 31 ............................ TGTTTAGAGGAACAATACTGTCCGTATTTGA 310526 28 100.0 32 ............................ GCGGTATGAAGCAGCGTGTGGGCATTGCGCGC 310466 28 100.0 32 ............................ ATAGTGTTGTAATGTCTGTTACCACATCTTTA 310406 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 310346 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 310286 28 100.0 32 ............................ TGTGATATACTCAGCGTGTGCTTTGGCTTTTT 310226 28 100.0 32 ............................ TACCAGCCAAAAATAAGCGGCTCAATGAGTTT 310166 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 310106 28 100.0 32 ............................ GTTTGCCAGTCGCCTGTTTTTGACCCTGACCA 310046 28 100.0 33 ............................ CAAGGTTTAGAAAAGGAACTTATGAGGTTTACT 309985 28 100.0 33 ............................ AAGCTCTTCTTGGATTTGACATTCGTGGTCAAA 309924 28 100.0 32 ............................ TCGCTTGAGCCATCTGAATTAAGTTCGATATC 309864 28 100.0 32 ............................ GTACTTAGTGTTTGACTCTCCGAAAATTGAGC 309804 28 100.0 32 ............................ AAACCCAAGCAGTAGCAAAGATAATAGCCGTC 309744 28 100.0 32 ............................ AGCGTCAAACGATACTGTATTGCTTGGTAATT 309684 28 100.0 32 ............................ TAGAAATCTTTCTAGTCTAGAAAGTTTAGTTC 309624 28 100.0 32 ............................ AAAAATCATCATGAATGTCTTGCCATTTTAAA 309564 28 100.0 32 ............................ GAGCGTATAACGCCAAGTGCCGAACAAATACA 309504 28 100.0 31 ............................ AATTTGGGGTTTTTTATTTGATACTATCTAA 309445 28 100.0 31 ............................ TCTGCTACTTTTTTCATTTCATTGTCAAGAG 309386 28 100.0 32 ............................ ATAGATTTTGGTAGCCATATCAATGTAAACAT 309326 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 309266 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 309206 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 309146 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 309085 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 309025 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 308965 28 100.0 32 ............................ CCGTACTTCACAACGTATTCTTTTGCTAAAAC 308905 28 100.0 32 ............................ TCAATCATAGCTTTATCCATATCATGCTTACG 308845 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 308785 28 100.0 32 ............................ TGCTTGTAGATAACGCTTGTTATAACGCACCA 308725 28 100.0 32 ............................ AATGACTTTCCAAAACTTGCCATCTCTTTTGA 308665 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 308605 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 308545 28 100.0 32 ............................ CTGTTTTTGTAGATTAAACGCTTAGCTACATT 308485 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 308425 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 308365 28 100.0 33 ............................ AGTAGTAAATAGACTGATAGCATCAGCATTAAT 308304 28 100.0 32 ............................ CCGAAAAGATTAGGGAAATAGCTTCCCACTTT 308244 28 100.0 32 ............................ AAAGACACGCACATGACAGGCGTATCACAAGG 308184 28 96.4 32 ..........A................. AAGGATTTAACTTTATACTTGTTACTGGTATT 308124 28 100.0 32 ............................ AGTAGGTACAATCTTAGCAACTGACGCAGTAG 308064 28 100.0 32 ............................ ATAACCTGCTAAAGTCGTTGGCTTATTGGTAA 308004 28 100.0 31 ............................ AACTGTGCGTCAGTCAAATCATCCGCATTAA 307945 28 100.0 33 ............................ CTTGTTACATCTGATACTAAAACATCTTGAAAA 307884 28 100.0 32 ............................ AATAGGCAAGCTATCCGCATTGCCCTTTAAGC 307824 28 100.0 35 ............................ ATTAACACCGTCCGCCAGCTTGGCGTTGGTGGCTT 307761 28 100.0 32 ............................ TCTTCAACGGTTGCTTGGGTGATTAAATAGCT 307701 28 100.0 32 ............................ ACATGCTTCTACTGCATTATCTGCCCATACAG 307641 28 100.0 32 ............................ ATTTCGTCTTTATCTTCGCTATCTGGCATATT 307581 28 100.0 32 ............................ GTAATGACTTCCCCAGTCTTGATATCAAACGG 307521 28 96.4 32 ..................T......... GTCAATGCGACTGTTTGACAGCTTGAGCTCGC 307461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 70 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGGCGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATTACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //