Array 1 123435-122858 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259704.1 Streptococcus sobrinus W1703 Scaffold411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 123434 28 100.0 33 ............................ TAGTAGTTCAATGGCCCAGAATAGATTACAAAA 123373 28 100.0 33 ............................ CGCTTTCGGCTTCCTGATGAACCATACAAGTTA 123312 28 100.0 33 ............................ CTTGTTTAGCCATGCTTACCTCCTTTTAATAAT 123251 28 100.0 33 ............................ CTGTTTCGCAATTGACTGATGAGTAAACCAGTC 123190 28 100.0 33 ............................ TGAGGATTGATTAAGTCAGCAACATCTTCTTTA 123129 28 100.0 33 ............................ GTGCTGTGACATTCGTCAGTTGAATAATTAAAC 123068 28 100.0 33 ............................ TTCCAAGCGTTCTTGGATTTCCTGCTGATTAAA 123007 28 100.0 33 ............................ TATTTCCTCTCGGCCAAAGCAGTGAAACGGTTA 122946 28 96.4 33 ..............T............. TGGTTTTGGGGATGCTAACTGGTACGAATACTA 122885 28 78.6 0 ..............G.....T...GCAT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 GTTTTACCCGCACACGCGGGGGTGATCC # Left flank : | # Right flank : AGATACTGGAATCTGAGAAATCTTGGTGAAAAAATTAATTTAATTTAGTGTCGTTTATTTACTTGTTAGGCGTGCCTAATTTTTGCTTTTCTGTTATAATGAAGGCAAGTAAAAGAATAGAAAAGAGGATTTCTTTTGGAAAGCCCAAAGAATAACTATAGAGCAAATAAGGCCTCTTTGAGCGAGGTTAATCAGAGTGTTGCTGTTCCTGAGACAGCTTCATTTTGGCGAATGCTCAAGGCCTTTATTGGACCGGGTGCCCTAGTAGCAGTCGGTTATATGGACCCTGGAAATTGGATTACCAGTGTGGTTGGTGGTGCTTCTTATAAGTACCTCTTGCTGTCGGTGGTCTTGATTTCCTCCTTGATGGCCATGCAGCTGCAGCAGATGGCAGGGAAACTTGGCATTGTTACCCGTCAGGATTTAGCCCAGGCAACCGCTAATCATCTGCCAGCCTGGTTGCGTTACATCCTATTTGTCATTATTGAGTTGGCCCTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 560-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259696.1 Streptococcus sobrinus W1703 Scaffold336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 559 24 100.0 37 ........................ TGAAACCCTAAGCCAAACTCAAGTGGATAAGATGTTT 498 24 100.0 37 ........................ TAGTTAAACTCCTCATGTTCAACGGGTTTAACCGTTT 437 24 100.0 37 ........................ CATAAGAGTTCTCCTTTTCTTTTAGTATTTCACGTTT 376 24 100.0 37 ........................ CAACTATGCAGAGAATATTCAAAACTCTGCTCAGTTT 315 24 100.0 37 ........................ CGACGACTGATTGCGCATGACTTTCAAGTCCTCGTTT 254 24 100.0 37 ........................ TATCAAAAAAAGTGTTGACACATAAAAAACGAGGTTT 193 24 100.0 37 ........................ TAATTTGGTCGCCGGCTTTAAAAGGATTTGTTAGTTT 132 24 100.0 37 ........................ TATTATATAACAGTAAAGAATATGTTTTTTTTAGTTT 71 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 9 24 100.0 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAACATACTATCATAGAAATTGCTGCTGTTAAAGTTAGTGGCTTACAGATAGAAGATTTTGACTATCTTATAAAATATGATAAAGTTTTACCGAAAAATATAGTCTCTCTAACGGGAATAAGCCAAGAACTTTTAAATCAGAATGGAAAAGATATTCAAGTTGTACTTCAGGAATTTCTAAATTTTATTGGAGATTTTGACCTTGTTGGTTATGGAGTGGGATTTGATATTAAGTTTATCAATAATGAGTTAAGAAAATTGGGCTATCCTTTATTGGAAAATAAAGTACACGATTTGATGAAATATGTTAAAAACGAAAAGTTGTTTTTAGATAATTACAAACTTCAAACAGCCTTAAAAGTATATGGAATTGAAGGAGAAGTGCCTCACAGAGCTCTCCCGGACTCTCGACTTATCTATCAGCTGTCTACCAAAGTGAATAAATTTTTGAAAAGGATCAATCAGAAATAGCGGTTTTATTGGGATCTTTTAGTGTTT # Right flank : CCGAAAAAGGACGTCTACAGCAGATGGGGGTTGAGTTTTACCCGCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //