Array 1 59102-57170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000021.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 59101 29 100.0 32 ............................. GTCGCGATCCCGGCCGCGACCCCCTGAGTCGG 59040 29 100.0 32 ............................. CAGTGGCCGGGGCCGCAACAGGCTGACGGGCG 58979 29 100.0 32 ............................. GCCATGACCGACCCAACGGAGACCCCTCGTCG 58918 29 100.0 32 ............................. GAGGGTGCCGGGTTCACGACGGTGGTGTACGA 58857 29 100.0 32 ............................. CTCCTTCTACAGCGAGGAGGAACTCAGGACGT 58796 29 100.0 32 ............................. CGTTCGTGTCCGGTGTCGCGGGTGTGCTCGGC 58735 29 100.0 32 ............................. CAGGAGAGCCGCCCCGAGCTTGGGGTCGCGGT 58674 29 100.0 32 ............................. GTCAACTGGTTCGACGCGAACTCCGACTACCT 58613 29 100.0 32 ............................. GCGTCCGCGATCGTCGGCAGCACCGGCACGAG 58552 29 100.0 32 ............................. GCGCCGTCGTTGTTGTCCATCGTGAGCGTGCA 58491 29 100.0 32 ............................. AGGATCTCCCCCGAGCACACAGCGGGACCCGA 58430 29 100.0 32 ............................. GCTTGCAGAGAGTACCGGCGTGGTGACAGGAG 58369 29 100.0 32 ............................. GTCGATGCCTGAGGAAGAGCCCTCCGGAGCGG 58308 29 100.0 32 ............................. GAGGCCGGAGTCGACCTCGCGGGTGTCCGGCT 58247 29 96.6 32 ............................A TCGTCGGCCAACTGCTGACCGAGGCGCAGTTC 58186 29 100.0 32 ............................. TACGGCCCGCTGCTGAGGATGGGGCTCCGGCT 58125 29 100.0 32 ............................. CGGCCGCAATCGCGATCGAGCTCGAGCGCATC 58064 29 100.0 32 ............................. GCGTCGACCGGTGTCGCCGTTGGTCCGGTCCG 58003 29 100.0 32 ............................. TGCGGGTCGGCCATGGCCTCGCCAAGCTGCAC 57942 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 57881 29 100.0 32 ............................. GACGACCAGGAGCCGAGCCCGTGAGCAACCCG 57820 29 100.0 32 ............................. CAGCGGCAGGAGCCGTCCGCGAGGGCGGCGAG 57759 29 100.0 32 ............................. GATACGCGAGGGCGCCACCTCGAAGGCGACGC 57698 29 96.6 44 .......................A..... TGTCCCTTGTGGTCCGCAAGCACCTTCTGAGAGGCCTTCGTGCT 57625 29 100.0 32 ............................. CAACGGCGCGTCGACTCGCTGAGCGTGCCCCC 57564 29 100.0 32 ............................. TGCGTCACCGTGCCGTCCGTAGCCGTGTGTCA 57503 29 93.1 32 ...........G.T............... ACGTCAACAACACCGGCGGCGCGGCCCCCGGC 57442 29 96.6 32 .........T................... AACGCCTTCTGTGTGTCCTCGGCCTTCGTGCC 57381 29 96.6 32 ...........G................. GTGCCCAGCACGTGCTCGGGGTGGGCGAGGAA 57320 29 93.1 32 .................A.......C... TGCCGCAGTCCGCCGGGCGGGTACAGGCCGGT 57259 28 96.6 32 ........-.................... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 57199 29 96.6 0 ...........G................. | C [57174] ========== ====== ====== ====== ============================= ============================================ ================== 32 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCACGACGGACCCGACGACTACGGGGATGCGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACGCGCTGGCTGCTGGAGATCTCCGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGGATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCGGGACAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGTACCCACGACCACGCCTGGCACCCGACCGACCACGAGGGCGTCACCCTGATCCGCCGCCCCGACCCGAACGCACCCGCTCCCGGCCCAACTCCCCAGAACGGTCCACCACCTGGCTGGAGCAGGGCCGCCAAACGCCGACGCTTCGGGAGGGGCTGATACACATCGAGCCACTTATGCCCTATTTGCCGGAACCGAAGAAAGTACTCGGAAACGACCCCCAGCGCCAGTAAAGCCGCAGGTCACCCAGT # Right flank : GAACCAGTCGCGCCCGACGTGGTCTCCCTGGTCTTCGCCGGACCCTCGGACGCGGGGCTCTGAGCCTGTTCGGCCTTAGGTCACATACCGGTACGGACACCGTCGCCCGGCTGCCGGTGCCCGGCCTGTTCACGGGTCTGCCGGGCTCGCAGTGCGCTCTGTCGCTGCTCCTGCTGCAGCGCCGCAGTGCGGGCCGCCTCGTCGGCCGCGTGCCGCTGTGGGGCCTGGGCGCTGGTGTGGCGGCGCACCTGCTGCTCGGCCTGGAGCTGCTCGGCAGCCTCGCGCAGATCGCGGGCCTTGGTGTGCAGCGCGACGGCCTCGAGGCGGGCCTGCTGGGCGGCTTCGGCGCGGGCCGTGTCGATCTGTGCGGCCAGCGTGGGCAGGTGGGCGTGCATCGCGGCGAACCGCTGCCGCATGACCGCCGGATCGTCGGGGGCCTCGCTGAGCGCGCCGTGGGCGCGGAGGGCCTCGGCGTACGGGGAGGTGCGCAGCGTCTGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68808-71703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000021.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68808 29 100.0 32 ............................. GCGGGAGCCGCCGCGGGTGGGTTCGTCGGGGG 68869 29 100.0 33 ............................. TCGACCCCGGCCGTCGCCGGGGTGAGCCCCCAG 68931 29 100.0 32 ............................. GTCGGGGCCGCGGCCGGCGGATTCGTCGGCGC 68992 29 100.0 32 ............................. CGGGATGAGTGCGGCCCACGCGACGAGGGCGA 69053 29 100.0 32 ............................. GGGAGAGCGGTGCCGGGGCGGGGGATCTCCAG 69114 29 100.0 33 ............................. CGACCCGACGAGCATCGGGCAGGGCGGCGGGGT 69176 29 100.0 32 ............................. TCACTGAGACTCGGAACGGCTCGGCAGGACTC 69237 29 100.0 32 ............................. GTCGCGGGAGATCCGTGCGAGTCTGCCCATGC 69298 29 100.0 32 ............................. TTTCCCTACTAGATCAAGCCGCCCGCACCGCG 69359 29 100.0 32 ............................. AGGGTCTCGCCCCTGAAGACGCGGTCGAAGAT 69420 29 100.0 32 ............................. AGCGGCTCGTACTGCCAGATCAGGCCTCGGAG 69481 29 100.0 32 ............................. GCGGCGACCGAGGTGGCCCCGCTGTGGTCCAA 69542 29 100.0 32 ............................. CTCGCGATCGGCGGCGAGCACGTGACCGCGTG 69603 29 100.0 32 ............................. CTGGCCAACTCCAGCGACCCGGCATGGGACCG 69664 29 100.0 32 ............................. GGTTGTCACCGAGCCGATCCATGACCTCTACC 69725 29 100.0 31 ............................. AGCGGCGCGAGCAGCAGGGTAACTGGACGGC 69785 29 96.6 32 ....................A........ AACTTGAAGCCTTCGACCGACAGACCGAGCTC 69846 29 100.0 32 ............................. TCGATCCCGAACAGCCAGGCGCCGCCGGCCAG 69907 29 100.0 32 ............................. TCCCGGTACGACAGCGGCGGAGTCTCGCTGTC 69968 29 100.0 32 ............................. GGGCCGTCGTCCTGCTTGCAGCGGAGGCAGCG 70029 29 100.0 32 ............................. AGCCACACGACGCGCAGCCGGTCACGCGGGTG 70090 29 100.0 32 ............................. TCCTGCACCTCGTCCACGTAACAGAGGTCACC 70151 29 100.0 32 ............................. GAAACTCCGCAACTCTCGGACATTCGTGGGAA 70212 29 100.0 32 ............................. GCGTCCGCGCGGTCCTGCGACCAGCGCGTCTC 70273 29 96.6 33 ............................A CGCCTCGAACGTGTTGCTGTATCCGGTCTGGCT 70335 29 100.0 32 ............................. GCTCGCGATTGCGTGTTCGAGATCGAGTCCGC 70396 29 100.0 32 ............................. CGCCTGCGATTGCTGGGGTGTGCATGTGCGTG 70457 29 100.0 32 ............................. CACGAAACGGCGTCTCTGCTGTCTGGTAGAGG 70518 28 96.6 32 .....-....................... TACGACGACATCCGGCTCGCCCTCCAGGCCAG 70578 29 100.0 32 ............................. AACGGCGACTCCCTGTCCCCGATCGTCAAGCT 70639 29 100.0 32 ............................. TCGACCAGGGGCACGCCGCCGAGGTCGTGCGG 70700 29 96.6 32 ..............T.............. GGCGCGTCACACCACGGGCCTTCGCCGGCCAC 70761 29 96.6 32 .........................G... ACCCGGCCCGATCGGTGCTTGGATCGACCCAG 70822 28 96.6 32 ....................-........ GTTGCTTTCGGCACGGTCACGATCACACCGGT 70882 29 100.0 32 ............................. ACCGGCGAGATCACCTACAACGGCCGCACCTA 70943 29 100.0 32 ............................. CACATCCAGCTCGGCTCGACGTCCTCGGACTT 71004 29 100.0 32 ............................. GGCTGCTCGGCGATCGTCAGGGAGGTGAAGAA 71065 29 100.0 32 ............................. CATTCAGGGCTTTTGAGGGTCCAGCATCGGCT 71126 29 100.0 32 ............................. ATCACGGCGGCGCCCTCCTTCCTGGTCAGACG 71187 29 100.0 32 ............................. CCGATCCCGCCGCCGTCGACAGCGACGCGCCT 71248 29 100.0 32 ............................. GCAGGGCTCGCGGCAAACGCGGACGCTCGCTC 71309 29 100.0 32 ............................. GGGGATGCCGGCGGTCTCGGCACGGCGGATAC 71370 29 100.0 32 ............................. GAGGCGGGCGCCCAGTTGCGGCGACCTCGAAT 71431 29 100.0 32 ............................. CCGCTGCCCGAGCTGCGGGACGTGTACGAGAA 71492 29 96.6 32 .................A........... CCGGCCGGCGGGGGCGCGACCCTCACCTACGG 71553 29 100.0 32 ............................. CAGATCACGCACGCGTCGGATGCGTGGCTGGC 71614 29 93.1 32 .........................C..T GTGCCGGGCGTTGCTGCGAGCCCTGGGACAGT 71675 29 82.8 0 .........A...T...A.A..G...... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCGGGAGTGGCCTTGCCGATGTCGTGCACGCCGGCAAGCCATACGGCGAGGGCGCGGGCATCCGGCTCACCCCGCGGCAACGCCCCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCATCGGTCCCACAACAGGCTGGCCACCGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCGTCGGTGTCACGATCATGCTTGGCCCACACCGACCGAGCCGGCCCCCCGAGCCGACGTAGCAGGCCGGAAGGGGCACTCCCCCCATTGCTCATGAAGGATTGATACAGGGAGAGCCCGGCTCCGCACACCAAAATGGGCAAACAGAAGCGTTTACAGGAAGACAGCACTCCCAAGAAGTACGGTGATCGGCTCACCATCGATCCATTGAGAAGCACCTCCGAGACTGAAAAGCGCCGTATGGCCTATTTGCCGGAATCTGCACAAGTCCCCGAAAGCACGCCTTCCCAGCAATAAACTCGCAGGCCAGACAGT # Right flank : CTTCGAGTCTGTTTGACAGCCGTTGGGGCAGTTGATCATTTTTCCCCGCATCTGAAGTACGGGCATTGGGGTTCAATCTCGTTCTGCCTTGATCCATTTATGTCAGGTGGCGGCCATCCTCTGCGCAGTGTCTGTCTTCCAATATGCGAGTCGTATAACGGCGTGCAGTCTGTACTCATGTTCAGCAGTAAGCACTGCACCCTTTCCGCGAGGCGACTGCACGCGCGATGGGCGAGCCGCCCTTGGGTGACCTTGTGTGCATCCACCTCCGGACTCGGTTCCCCGGGGCTTGCGGGGATGGCCCCATGCGGGTCGTCATCCAAAATTGCTCCCCGCGCATGCGGGGATATGACCAGAGAAGTAACAGAATGTGCTGACCTGCAAGCTGGTGGTGAGTGGCGCTGGTCCGCTTCGGCACCCGATATCAACCGCGCTGCTGGCAACTGGTACCCAAGTTGGTACCGCCCCAGGTACCCTGCTGGTATGCCAGCACTCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7058-4896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000036.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7057 28 100.0 33 ............................ GACTGGTCCCCTTTAGTAATAAGATCAAGCACC 6996 28 100.0 33 ............................ GGAGCTCGCCCGGCTGCGGGCCGACGTCGGGAT 6935 28 100.0 33 ............................ GCTCAGCGGCTGGTTCTTGACGCGCCAGTAGCC 6874 28 100.0 33 ............................ GCCAGCACAGGGGAACGAATGTTGCCCAACCGA 6813 28 100.0 33 ............................ GCCGTCCGGGCCGGGCACGGTCCGCCCTTCCAG 6752 28 100.0 33 ............................ GACCCCACCGGGCCCGGCTGGCACCGCCTATGC 6691 28 100.0 33 ............................ GCTGGTCACCTTGGCCAGCCAGTGCTTCCTGCC 6630 28 100.0 33 ............................ GCCCTCAAGAGCCGACGCCCGGAACTGTTCGGC 6569 28 100.0 33 ............................ GACACCGGCTGGGGTACACCCCCCACCGACCCC 6508 28 100.0 33 ............................ GAGCATGCTCGGCAGCGTCAAGAGCGCGGCCAG 6447 28 100.0 33 ............................ GACGGCGGCCTGATCATGGGTGAGGGCGTGCTG 6386 28 100.0 33 ............................ GGCCGCGTCATCGGCGGTGGAGTCTGTCAGCGA 6325 28 100.0 33 ............................ GTTCACCACCCGCTACCGGGCGACCGGGACGGT 6264 28 100.0 33 ............................ CTGTTCAGGTTCGCGGGCACCACGAGGCCCGGT 6203 28 100.0 33 ............................ GCACGAGAGCGACTTCCTGATCCTGCCGAATGC 6142 28 100.0 33 ............................ GTCCGGGACGACGCTGCTCGACGAACGGCCCGG 6081 28 100.0 33 ............................ GACCCCCTCGGCTACGGGGTGGTGACCCGATGA 6020 28 100.0 33 ............................ GTCCGCAGGACCAGCGGCGCGACGACGGGCGGC 5959 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 5898 28 100.0 33 ............................ GTAGACGACGGTGAGCGGGCCGACGTCGGCGCG 5837 28 96.4 33 ....................A....... GCCGTCCTCCTCGACGACGCCGTACAGCTTGTC 5776 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 5715 28 100.0 33 ............................ GGAGACCCCGGCCGACGGCGGGGTCGTGCAGAA 5654 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 5593 28 100.0 33 ............................ GGAGACCCCGGCCGACGGCGGGGTCGTGCAGAA 5532 28 100.0 33 ............................ GCTGTATCTGCGGATCGATGACAACCTGCGGGC 5471 28 100.0 33 ............................ GATCGAGTTCGGGGACTCCGTCAGCGAGGACCC 5410 28 100.0 33 ............................ GGCGCGGAAGAGCGCGTTCTCCAGCGCGTAGCG 5349 28 100.0 33 ............................ GACGGTGCGCAGCGCACTGGGTGAGCTGTACGC 5288 28 100.0 33 ............................ GAATTCGGCGGCCTGGATCGTCTTCCCGCCGCG 5227 28 100.0 33 ............................ GGCGGCCGACCTCGCCGAGACGGTGAAGGCTGA 5166 27 96.4 33 .....-...................... GCGGTGCGGGGGCGGTCAGAAGTCCATGCCGGG 5106 28 100.0 33 ............................ GGCGTGTACGGGGCGCTGCAGTTGCACGCCGCG 5045 28 100.0 33 ............................ GATCGCTCACATGGGCCTGGGTACGGCCAGAGT 4984 28 100.0 33 ............................ GGACTGGCCGAACTCGCGTACCAGCCACCATTA 4923 28 92.9 0 .....................A..C... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.6 33 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : GCCCAGCTCCGCACTGAGGTACTGACTGCCGTGCCAGGAGCAGAACTGGAACCCTGACAGCTTGCCGATGTCATGCAGACCGGCACACAGACCGACGACCGCCCTCGCACGTTCCGGCTCGCCCGCCAGCCGCATCCCCTCGGCGATCCGCACACGCTGGTTCTCGGACAGGTAGACATCCCAGAGGTGCAGCGCCATCGCGGCAGCGTCCAAAAGGTGCCGGATCAGCGGATACGGCGGCAGCCCCGAATCCAAACCTCTCGACTTCCCCCACACCGACTCATCCGGAGCTTCCCACTTCCCCGCCACCCTCGCCCCCTCACTCCAGCCAACGGATCGTGCCCCGCTGCTGAAGCCGGAATTCAATCACCTTCCACTGACAACACCGCAGCCATCCAGCCCCGATAGGGTTACAACATGCAGTCCCACCGGTCGCGACACAGAGCGCCCTTCAATGCAAAGGAAAGGCAAAGCCCTTCTTAAGCCGCAGGTCAGAAAGA # Right flank : GAGACTGCCGTCCTGGTCGGAGATTAAACTGCATCGCTACCGCACGGTGGGCGATGACGCGCACTGACATCGGATGCGTGCACCGAATGCCGGAATGTCCTGCACTTATCTCCGACGGCGGCGCAGGCGCGCGAGCCGCCACGGGTTCGGCCAGCTACCAGGAAACTGCCTTGAACAGCGCCGCACGCAGCCGGAACGCGTCCGCGAGCTGCTGGAGGTATTGCAGGCGCTCCAGCGGCAGGGACGGTGGGATCGGGACAACCATCGGATCCCTCCCGCTCCCGGCCCGCTCCGGGATCGGGCGGCCGATCACGTCCCGGCGCATGGCATGGGAAATTCGTCGTCCGTCCCACTGGACAGTTCCCCGCCGTCACAGCTGGATGCCCTGGCCGGGCCGGGCTGCGGGTGCTGCTCGTGTTCCTGGGGGTGCGGGTCGGCGTCCAGAGCTGAGGGCTCCCGATCCTCGATGGCGCGGATGATGGTAGCGAGCCGCGCCAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16448-19837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000036.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 16448 33 93.9 28 ..............................T.A CCGTCAGCCGCAACCTGCGCCGCAACCT 16509 33 93.9 28 .............................T..A GAAACCCGTCTCTCCTGCCCTGTCGTTG 16570 33 90.9 28 .............................T.GA TCGGGGTCTTCGGGGCGGGCATCTGGCC 16631 33 90.9 28 .............................GA.A CCAAGGGCAAGAACGTCGTCATCACCGC 16692 33 97.0 28 ................................A CGAGACAGGCGACAGTGGCGGCAGCAGT 16753 33 90.9 28 .............................AA.A GGACGTGCAGGTGGACGTGCCAGCCGTT 16814 33 93.9 28 .............................G..A GGGACTTGGCCTCCAGCTCCACCGCGTC 16875 33 97.0 28 ...............................G. CGTGCGCCGTCTGCACCGTGAGGGCTAC 16936 33 93.9 28 .............................A.G. TCACCACCCCGGAGCCGGGCGTGGTGAG 16997 33 87.9 28 .............................TGTC AGGCTCGGGTGTCAGGGAGTGTCAGGGC 17058 33 90.9 28 .............................AT.A CCGCCCTCGAGAACGGCGAACCCCCCGC 17119 33 93.9 28 .............................T..G CGGCTTCTACGGCCCCGGCCCCGCCCCC 17180 33 97.0 28 .............................T... CGAGGGCCTTGCGGGCGCCGGCGCGCTC 17241 33 87.9 28 .....................A........GGG TCGAGGAGCTGACGGGGATCACCCCGAA 17302 33 97.0 28 ................................C GCCCGCACCTCGGCGAGACCGCCACCTA G [17324] 17364 33 93.9 28 .............................AT.. TCGGCAGAGAGCCCGCTCTCATCATCGC 17425 33 93.9 28 .............................A..A GGGAGCACGGAGCGGCGGTGCCGTTCTG 17486 33 90.9 28 .............................G.AG AGATCGCTGCGGAGCGGAAGGCCAGGGC 17547 33 90.9 28 .............................A.GG CCAGCGCACCCGAGGGCGAGCGGAACCG 17608 33 90.9 28 .............................AT.G GCGCGTCATCACCCTGCCCCGGCCCGGG 17669 33 90.9 28 .............................GA.A TGGGCCACACCCGCCCGGCCGAGCGCGA 17730 33 93.9 28 ...............................TC GGTGCCCGGACGTCAGGGGGAGGGAGGC 17791 33 90.9 28 ..............................AGG GTGATCCGAAGGCGTACCCGTGGGAGAG 17852 33 93.9 28 .............................G..A CTTGGTGAAGGGCCGCCAGGACTCCGAG 17913 33 87.9 28 .............................ATGA AACGGCGCATCGCCGAAGCGCTCAAGTG 17974 33 90.9 28 ..............................GTC CGGCATCCCGCCGGCGACAGTCTCACGA 18035 33 93.9 28 ..............................GG. TCGAGCGTGCGTGGGGGTTCGCGTTCGT 18096 33 90.9 28 .............................T.GC GGACGCGGACCGCGGCCTCAACGGAGTC 18157 33 93.9 29 .............................TA.. GGCCGGTGATGATGTTGGGGCCCGGCCTG 18219 33 100.0 28 ................................. CATGCCCAAGCACATGGACGTCGGCCGC 18280 33 100.0 28 ................................. CGGCTACACCCGGCTCATCACGTACACC 18341 33 93.9 28 ...............................GA CCATGGACGCCAAGGGCGGCATTGACCC 18402 33 100.0 28 ................................. CGTACCAGAACCACCAGTTCAAAGTCAG 18463 33 97.0 28 ................................G CGCCGACCAGGCGCAGATCGACCTCGGC 18524 33 90.9 28 ..............................AGC CAACTGAGTAATGGTCTCACCCTCGGCC 18585 33 93.9 28 ...............................GA GATCGCGACGCGCGACCTGATCGCCACC 18646 33 90.9 28 ..............................ATG CCCACCTCCCCCGGAAACGCCTCAGGGC 18707 33 93.9 28 .............................A.A. CGCCCGCATCACCGGCATCCCCGTCCAA 18768 33 90.9 28 .............................T.GC GGAGCCGGGCGGGGTTGCGGCGGACGAA 18829 33 90.9 28 ..............................GGA TCATCACCAAGATCAACAATGCGCAGGG 18890 33 87.9 28 .............................ATGC CCGAGCCCGAGACGATCCCCCTGAGCCC 18951 33 93.9 28 ..............................T.G TTCGCCAGGTTGTTGTCGAGCTCATCGC 19012 33 90.9 28 .............................A.GG ACGAGCGGGTCACGGAGGCTGTCCTGGC 19073 33 93.9 28 .............................T..G AGTCCGCGAGCGGGCTCGAGGGCATGGT 19134 33 93.9 28 .............................G.G. GCTGCGGATCGTCAGCATCGAGAACACC 19195 33 90.9 28 .............................GG.G GGTGTGCCGGTGGGTGTGACGGCCAGGG 19256 33 90.9 28 ..............................TGA TGGACAGGACCAGGACGAGAGCGCCGTA 19317 33 90.9 28 .............................GA.A GCGCCCGGTGGACGATCGCTCCGGATGC 19378 33 93.9 28 ...............................TC GCTCAAGTGGCGCCGGGAGATCGCCGCG 19439 33 90.9 28 ..............................GGG ATGCCGAGGACACCCGGCCGCCGACCCG 19500 33 90.9 28 .............................AA.A AGCCCAACACCTCGCAGACCTCGCTGCC 19561 33 90.9 28 ..............................TGC GGCGGGACGGCGGCGTGCGACCGGAGGA 19622 33 87.9 28 .............................AAGC CCAGCTTCCCGCCTGTCGCGTCCAGGTC 19683 33 87.9 28 .............................GAGC CCGACACGGACAAGTGGCTGGCGGCCGG 19744 33 90.9 28 .............................AT.G AACAGGGCGGCCAGGCCCGGGTGGACAC 19805 33 84.8 0 ........................CA....GTC | ========== ====== ====== ====== ================================= ============================= ================== 56 33 92.5 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCT # Left flank : CGTCCAGGACGTCCAGTCCCTGCTCACCCCGCCCCACACGACCACCCCCGACGACGACACCGACGAGGAACACTCCGAACGGCGCGACGTACAGATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTCCCCGCAGGCGTCAACTACGCCGAAGGAGGCAACTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTGCCCGGCATCTTCATCGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCGAAGTCGTGGGCAACGGCGCCGCCCTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCGTCCGCACCGCAGGAACTCGACGCCGGGTCCCTGTCGACTTCGACGGCCTTACCCTGATCCGCATGACCGCCGCGCCAAAAGCAAAAGAAACGCAAAGCCCCTCTTAAAATGCAGGTCAGGAAGT # Right flank : CCGAGGTCGTGGCTGGCGTCGGTACGGAAAAGCGTAGGGGCTCCGGGGGGCTCTGGTTGCTCAGAGACCTTGAGCGCTGGATGAGGGCATGGCAGCGCTCACCCGCGGGGACCTGGCGCCGCGTCGTCGGTGGAGTGTGGTCAGCCGTGGTAGGTGATGTAGCCGTTGCCGTCGCGGTCGTTGGCCTTCTTGGTGTAGGCGTGGACGTCGGCGCGGGCGCCGGAGGGCTTGTAGAAGTAGATGGTGTCCTTGTCGTTGTTCCAGATGAAGTTGCAGTTCTGGCGGTAGACGACGTTGCCGGCGTCGGAGTCGGTGCCGCGGCCGCCGCGCAGGTGGACGTAGTCGCCGGGCTGCAGGGTGTGGCTGTTTTTGAAGGTGAACGTGTTGCCGGCGGCGTCCTTGACCTTGTAGCCCTTGAGGTTCACGTTCGTGCTGCGCGAGTAGTTCTTGATCGTCAGGTACTCGTTCTTGGTGTTCCCGCCGGAGCACTTGTTGGAGTC # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 15904-18311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000030.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15904 29 100.0 32 ............................. CTGGACCCGTTCGCCGCCGCCATGTCCGAGGC 15965 29 100.0 32 ............................. GTCGACCGTGCCCTGCACCAGATCGGCCGCCA 16026 29 100.0 32 ............................. ACGCTACGAAGCGCGCGAAACGCTGTGGGAGG 16087 29 100.0 32 ............................. CGGGACCGGCTGCCGTTTGCGCCAGACCTCGA 16148 29 100.0 32 ............................. GGCGCCGTCGTCGTCGACCTGTACCGCCCGGC 16209 29 100.0 32 ............................. GCGGGCTGCGCGTTCGAAGCGGGGGTGATGGT 16270 29 100.0 32 ............................. TACACGCTGGACGGCGCGCCCTACGTGCCGAC 16331 29 100.0 32 ............................. GGGTTCCCGCCGGGGATGACTCCGGGCCGGCT 16392 29 100.0 32 ............................. GCGGTATGGTCGGCGCCCTTCACCAGCACCGG 16453 29 100.0 32 ............................. TCGCCTGAGCACGCCGCCCGCGTCGCCGAGCT 16514 29 100.0 32 ............................. CTGGGCGACGGCGAGGACCCGTGGCCCGAGGT 16575 29 100.0 32 ............................. TCGGGGTTGACCTGGTCCATCGAGCCGTCCGC 16636 29 100.0 32 ............................. GTCGACGTGGTCGGCGTCGACCTGGACCGTGG 16697 29 100.0 32 ............................. GATCGGGACCGCACGCCGGGGATGCCGGTGAC 16758 29 100.0 32 ............................. CATCTGCTGCCGATGGCGACGTCGTCGATGAG 16819 29 100.0 32 ............................. GACAACTTCGACGAGTTCCCGGCCGAGGAGAT 16880 29 100.0 32 ............................. TCCTACAAGGCCGTGGACCAGGACGTCCGCGT 16941 29 100.0 32 ............................. CCCCGATGAGCGTCACGATCCCCGGAGCCCTC 17002 29 96.6 32 ..............T.............. GCGACCGCGCGGGACCAACGGCTCTCGTACCT 17063 29 100.0 32 ............................. ACGACGCGGGCCTCCGTCGGCGACTCGACCGC 17124 29 100.0 32 ............................. TCGATTCGCTCGATCGCGGCGATCATGCCGTC 17185 29 100.0 32 ............................. GCGGCACGCGAGTACCGGCCCCGCCCCAAGCG 17246 29 100.0 32 ............................. CCCCAGAACGTGGCGGCGTTGGCGGCGAGCTG 17307 29 100.0 32 ............................. AGGGGCGGGTCGTCGTCGCCCTGGATGCGGAA 17368 29 100.0 32 ............................. GCGACGGTGGCCGCGTTCGTGGCCGCCGTGCC 17429 29 100.0 32 ............................. CACAGGTCCACCTGCTGCACGTCGATGTCCCG 17490 29 100.0 32 ............................. CACCCCGCCTACGCCCTCGCCGCACGACTCGG 17551 29 100.0 32 ............................. GGGAAGCGGTACCGGCTGGAGACCGTACGCCG 17612 29 100.0 32 ............................. CCGGCGTGGGCGGACAGGCCCGTCGTGCCGAT 17673 29 100.0 32 ............................. GACACGGGGGCGATCGTCTCGCCCTCGATGAG 17734 29 100.0 32 ............................. CGTCGTACACCAGCACCTTCTGGCCGACGTTC 17795 29 100.0 32 ............................. CAGCTGTGCCAGCGGAACAGGACCTCCGGGCA 17856 29 93.1 32 .................A..........A CGGGTGCGGGGCACCAACTTCACCGCCGGCCG 17917 29 100.0 32 ............................. AGCGTTGCCGACACCATTGGGCAGACGACGTC 17978 29 96.6 32 .........................C... GAGGTGACGTACGGCCGGGTCTTTCCGTTGGC 18039 29 93.1 31 .................A.......A... GTAGGGGTCTCGTTATACGGCGTGTAATTTC 18099 29 89.7 32 .C.....................AA.... CGGTTCGGGTAGACCCCGCAGTCGAAGAAGAC 18160 29 96.6 31 .........A................... GGGCCGTACGACTGGGTGAAGGTGTTGCGCT 18220 29 79.3 32 ...T.A..T......A.A.........T. AAGCCATCGCTGATGGTGAGGATCTGCACCAC 18281 29 82.8 0 ............A.T.......A...A.G | GC [18303] ========== ====== ====== ====== ============================= ================================ ================== 40 29 98.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGCGGAATCCGACACGGCTGGCCCTTTCGGTGGAGTGGTGCGGGCGAGGAGCAGGTACGGCTGAGTGCGATGGACGAGTGAGGAAGAGGTCGGCCGTTCAAGGCTATGCCGTGTCCGGCGGGAGCAATGCGCCTGCCGTCAGGCCGGCGGTCAGGAGGCCCGTGTACTCCTGAGCCAGGTCGGCGGGCCGCGGCGCGCAGTTCGCCTGTCGCCGGTGCCACCGGGTGATGAGCGAGCCCCGAGCGCCGAAGCGGTATGCGCCGCTGCTGCTTCAGGGTGCTGTCGAAGCCGGGGTGGTGGGAGACCGACGACCGCTGGTGACGCGCAGCGTCCCGTACCGCGGTTCTTCGGCTGCGTAGCAGTCCCGTTGGTCCGCCGGTGACTGTAGCGTGGTTCGGCGCACCCAGAACCGGAGCCAGGATCTTAGGCGTCATTTGTCGGAATCTGCAAAAGTCGCCGAAACCGTGCTCGGCTCGAGATAAACCCGCAGGTCAGCAAGA # Right flank : GCGATCAAGGTTGAGCTGCGGCAGCGGTGGCAGTGGGTGGAAGCGCGGATGAGGGAGTCGGAGCCGGAGCGGGCATGGACCCCTGGGTGCGGAGTGCGCTGATGGGTGAGAACTCTGGTGCGCGAGCCCCGGAGACGCCACTCGCGGGGGCCGACGGACGGGGGGAGGGACCACGCAATGGCGAGAACGGGGATCGAGCGCCGAATCGCAACGGCCTGACGGATCCTGCAACGTCGCCGGACCGTTCCCACGTCGGCAGGGAGAGCTTGCCGACGCGGGAACGCTCCTTCCAGGCATCGTGCGCTGGGTGACCTTCCTCTGCGCCCGGCCGGCGCATCGGCTTCTCAAGTCGTCCCGCTTGGCGAGTTCCGCACGATCGGCTTCGCGAAGCCTCTCGCTCTGCTAAGACTGATCTTTCACGGTCGTGATCGCTTCCTCTCCCGTCGTGGTGTTGCCGGGGAGGCACGGCCGGTTCTTAGGGGGAGGGAAGAGCGATGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29531-30777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000030.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29531 29 100.0 32 ............................. AACAGAGTCGACCGGAGAGGGAAGTGGGTGCC 29592 29 100.0 32 ............................. GTGACCATGGCGGCCACGAGGGCGCGTTCGAC 29653 29 100.0 32 ............................. GCGTCGGACGCCTGGCTGGCGGCCTGGTTGGC 29714 29 100.0 32 ............................. AAGGACACGTTCAACGACAAGCACTGGAAGCC 29775 29 100.0 32 ............................. GCGCGCGGGGTGCCGTCAGGGTCGGTCCAGGT 29836 29 100.0 32 ............................. GACCGCGGGTGCAAGGTCGACGTCCCCCGGCC 29897 29 100.0 32 ............................. GTCGCGCGACTTTCCAAAAGTGCAGGTCACGC 29958 29 100.0 32 ............................. CCTGCGTCGTCCCCGCGAACTCCGAAGCACAG 30019 29 100.0 32 ............................. CATGCCGGGGGCGCCGGGACAACCCCTCAGAG 30080 29 100.0 32 ............................. CAGAAGTCGGTGATCTCGATGTCCCGCAGTTC 30141 29 100.0 32 ............................. CCGCGCGGTCATCGTCGGCCCAACCCTCCGAC 30202 29 100.0 32 ............................. GACCTCAACGACGCCCGCAGCAAGCAGGCCGA 30263 29 100.0 32 ............................. GGCCGCAGCGCCACGGACTTGCCAGCGCCGGA 30324 29 100.0 32 ............................. GACAATCCGCAGGCCAGCCTCGCGACCGTGAC 30385 29 100.0 30 ............................. GACCGCGCCGGTCTGGTTGGCGTAGCGCTC 30444 29 100.0 32 ............................. CCTTCGATGACCGCGGGCAGCGCGTCGATGTA 30505 29 100.0 32 ............................. GGTGGCCCGCTTTGACGGAGCCACGCCCGCCT 30566 29 100.0 32 ............................. CCGTTCTCCACGGCGGCGAGGTCGTCGATAAG 30627 29 100.0 32 ............................. CTGTACCGGGGCGCGGCCGGGGTGCTGCAGAC 30688 29 100.0 32 ............................. CCGTCCGGCGGAAAGGCCATCTGGGGCTCTAT 30749 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGGGCAACGAGGGGGGAAAGCCGTTGTTCGAGTGCGAGGGCAGCGGGTGCAACAACTGGGCACGGTCGAAGCCGTATGCGGAAGGGTTCTTCTGTCGCCGGTGCCATCGGGCGATGAGCGAGCCCCGAGCGCCGAAGCGGTATGTACCGCCGCCGCTTCAGGGTGCTGCGGCACGCAGGGCTCTGGAGGCGAAGACGCCGGCGCCCTGGTTGCGTCCAGCTGCTGGGAAGAAGACGAAGACGTCGACGCTCGCGCACACGCCGCCGGGTCCGTTGCGGAAGTCGAAGCCGGGGTGGTGGGAGACCGACGACCGCTGGTGACGCGCAGCGTCCCGTACCGCGGTTCTTCGGTTGCGTAGCAGTCCCGTTGGTCCGCCGGTGACTGTAGCGTGGTTCGGCGCACCCAGAACCGGAGCCAGGATCTTATGCGTCATTTGTCGGAATCTGCAAAAGTTGCCGAAACCGTGCTCGGCTCGAGATAAACCCGCAGGTCAGCAAGA # Right flank : CACGTGGTAGCCGGCCTGCTTGCCCTTGCCGGTCTGCTCCCTGGCTTTGTCCACGAGAACGGACAGCAAATGTTCACCACTTCGGGAGGCACCCGGCACGTCGTGATTCGAACAGTGACGCTACACACCGTTGCGGTGCACGATCCCGACCATCCCGCTGTCCCCGAACTGCCGGCCCACGCCCACCAAAAATGCGACTTCGGGGACCGATCGAACAGTCATCAGCGGTAACGGCGATTCCGTTTACCGGGCGAGCCGACCTGGCAGCCGTCCTGATGTCGGCAAGGACAGCGGCAGGTGGTTATGTGCCGGTTTCCGGATTACTCCAGGTCGTCCCATGCCCATGGAGGGGCGGTACTCCCGTCGGGCTCACGCCCGAACCGGAAGCGTATTGGATCGCCTCCAGACGTGATCCATTGATCGAAGAACCCCGCGGCAGGAAGTTGGTCCAGCAGGGCGGCAGCCTGCTCGTCCGCTCCCACCTCCCGCAGCCGATCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1964-2662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000037.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1964 29 96.6 32 ............T................ CAGACCGGGGTGACCATTACCCCCCACGGCAC 2025 29 96.6 32 ............T................ CTACCTAGATCCAGGGCGAATCCGTGCCTGTT 2086 29 86.2 32 ............T.T........A....G AGCCCATCGTTCCCCAGCGGCTGGAGCTGGGC 2147 29 86.2 32 ....C.........T........A.T... TCCTGTGTCCTCTTCAGCGCCTGCTGGAGCCC 2208 29 93.1 32 ..............T..A........... GTGTTCCGGGTGTATACGCCGAGACAGTTGGT 2269 29 100.0 32 ............................. ACGACCGCGAGCTGCGGATCGCCCGCGTGATG 2330 29 82.8 33 ........T.....T...A....A.T... TGTTCGGCGCCCCCCTCGCCGTTCCCTATGTGT 2392 28 89.7 32 .............T...-.....A..... CACGATCGGAGCAACCCCGACCATGGCCACCG 2452 29 100.0 32 ............................. ATCGGGCTGTTCTCCCTGTCCGTGGCCCAGCG 2513 29 93.1 32 .............T..........A.... TCCTGGAGCACGCCCAGCTTGCATGGGAGCAG 2574 28 79.3 33 ...........A..T....A..-.AA... CGCCATATACGTCGTCATCGGCCGATCGGGCTG 2635 28 75.9 0 A...C......A.T.....A...A.-... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 90.0 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : CCGCCGACCCACCACCGGTGGGTGATGGCCCGCCGCAGCCTGTCCGACCCCGAAGAGCTGGCCTACTACCTGGCCTACGCACCCGTCGGCGTCGAGATCGCCGAGCTGGCCCGCATCGCCGGCTCCCGCTGGGCGATCGAGGAGTGCTTCCAGGCCGCGAAGAACGAATGCGGCCTGAACGAGTACGAGGTCCGCCGCTATCCCGGCTGGTATCGGCACATCACCCTGGCCATGCTCGCCCACGCGGTCCTCACCGCACTCGCCGCCCAGGCCGCCGAGGCCGCAAAGGGGGCTGCAGAAACGGACCAGCCCTCGTCCCGCTCACGGTGGCAGAGATCCGGCGGCTCCTGGACGCTCTCCTGCCCCGCTCACGAGCCGACCGCGCCCCCATCACCCACGCACTGAAGTGGTCGGCCTGGAGAAGACACCGCCAGGCCGTCGCCCGCCGCTGCCACTACCGAAAACGCAGCTCAGAACACGATTCGCTGCTGGAGTACTAA # Right flank : CCTTCGACGATGACTACTGGCACCCCCTCCGTGAACCTCTTCCATCTTGATCAGGTGGCGAGTTCGAGGGCGACGACGGCTCGGACGACGGCTGTGATCCGGGTGGTGCTGCAGCGGAGTTTCCGCAGGAGCCGCCAGGACTTGAGGATCGCCATGGCGCGTTCACCGAGGCTGCGGATCTTCGCGTGGTCCCGATTGTGACGGCGGCGCCAGCCGCGCAGATGCTTGCCACGGATCGGGACGTGGATCGCAGGGCCGGCGCCCTGGTACGCCTTGTCGGCCCAGCACTTGATGTCATCTGCGGCGAGGGCGGCGGGAATGCCGTGGGCCCGCGCCGCGGTCAGGTCGTGGGTGGCTCCCGGCAGTGCGTCCGAGGCCCAGATCAGGCGCCCGGCGGGATCGGCGAGGACCTGCACGTTCATCCCGTGGTGCTTCTTCTTCCCGGAGTAGTACGGCTGGTCGGCGGCGATGCGGTCGATCGGCAGCACGGTGCCGTCGAG # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3584-4022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJI010000037.1 Streptomyces griseostramineus strain CECT 3273 Ga0436948_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 3584 29 69.0 75 G.....T.......GTA....ACT....G GCTATACCCCTGAGAGCGTCAATGCATGTAAAGGAAAACAAATGTGCTTGCTAGCATTACTGCAGGTCAACAAGT T [3595] 3689 29 96.6 32 ......T...................... ACCACCATGACGATCTCCGGGCTCCAGCCCAA 3750 29 93.1 32 ......T.....................T CCGCAGGCGCGCATGGGTTGCGTAGACTGCGC 3811 29 96.6 32 ............................G ATGGGCATGACGTGCTCACGGACCTCTCCGAG 3872 29 100.0 32 ............................. GAGCGCCTGGACGTGCTACCCAAGGGTCAGGC 3933 29 93.1 32 .........................C..T CCGTTGGGAGAGGTCCCCATCGTCCCTCTCAT 3994 29 86.2 0 G..........A..C..........C... | ========== ====== ====== ====== ============================= =========================================================================== ================== 7 29 90.7 39 ATCGTCCCCGCGCCTGCGGGGGTAGTTCC # Left flank : CCCGTGGTGCTTCTTCTTCCCGGAGTAGTACGGCTGGTCGGCGGCGATGCGGTCGATCGGCAGCACGGTGCCGTCGAGGATCACGTACGCCTTCTTCCGGGCGGTCGTCATGGCCTGTTCCAGCGTGGGCGCGAGGGCGGCCAGGAGGTCGACGGCCTCGCGCGTGTAGCGGTAGGCCGTGGCGATCCCGATGCGGAAGCCTGCTGCGAGGCGGGCGTAGGTGTCGCCGCAGCGCAGGTGTGCCAGGACGAGCAGGGCCTGCCGGCCGCAGGTGAGGCGACGCCAGCGGGAGCCGATACGACGGCGGTGATCTGCGAGGAGACCGGAGAGGTGTTGCAGGGTGCGGCTGGACAGATCGATGCCGGACGGGTAGACAAGCACGCGAAAGCTCCTGGCGAACTGGTGATCTTGGTCGAGAACCCGTCTACCAGGAGCTTTCTTCATGCCCGCCGCCGGAGTCACCCGCCCAACCACCCGTCAGGTTGGAAACGGCTCCGTGA # Right flank : CTTCTCGCTGAACACGGGCCCGTGCACTCTCTAACTTGATCTTTAACCTGTGCGGCGGGGACGTGGAGTGGTCGACTTCTTTGTTCTTCGTTGCGTCCGCTGTGTTGTGCGAGCTGTGTGCACGTCGTGGCGGGGTGTGGGCCGGGTGTTCTTGCGGCCTGGTGGTCGTCCGGGGCCGGGCCGGGAGGGTTTCGGTGCCTGGGCCGGGCAGGTGGTCGACGGGCGGATGTGCCGGAAGTCGCGGCGGACGCGGGCTGGGGTGAGTCTGTCCGGTGGGCTGGGTTTCTCCCACGGCCGACGCCGGTCGGCTGCCAGCGGCCGGGCAAGCCGCAGCTGGGTGTAGGCGGCGATGATCAGCCAGGTCCATCGGTCAGCTGCCTCGGGGGTGCGGATCTTCGGTGCGGTCCAGCCCAGGGTCTGCTTGAACAGGTGGAAGGTGTGCTCGATGTCGAAGCGTCGCAGGTAGGACTGCCAGAGGCGGTCGGTGTCTGCGTTGGTGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:-0.53, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTCCCCGCGCCTGCGGGGGTAGTTCC # Alternate repeat : ATCGTCTCCGCGCCTGCGGGGGTAGTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //