Array 1 491-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDE01000021.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIVB .SLX_12186.D706_D506.HJ72NBBXX.s_1.r.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 490 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 429 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 368 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 307 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 246 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 185 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 124 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GAGCCGTTTATATTAATAATGTAACATGTAGAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-2581 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDE01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIVB .SLX_12186.D706_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 113 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 174 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 235 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 296 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 357 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 418 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 479 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 540 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 601 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 662 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 723 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 784 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 845 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 906 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 968 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 1029 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 1090 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 1151 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 1212 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 1273 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 1334 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 1395 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 1456 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 1517 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 1578 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 1639 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 1700 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 1761 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 1822 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 1883 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 1944 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 2005 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 2066 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 2127 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 2188 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 2249 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 2310 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 2371 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2432 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 2493 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 2554 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGGGTTGTCTGGTAATGCTGCATATTCACGCCTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11022-12210 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDE01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIVB .SLX_12186.D706_D506.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11022 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 11083 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 11144 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 11205 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 11266 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 11327 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 11388 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 11449 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 11510 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 11571 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 11632 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 11693 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 11754 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 11815 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 11876 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 11937 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 11998 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 12059 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 12120 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 12181 29 96.6 0 A............................ | A [12207] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //