Array 1 28673-26799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034662.1 Moraxella catarrhalis strain 46P58B1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28672 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 28612 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 28552 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 28491 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 28431 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 28371 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 28311 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 28250 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 28190 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 28130 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 28070 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 28010 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 27950 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 27890 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 27829 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 27769 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 27709 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 27649 28 100.0 32 ............................ ATCTATCCATTTCCGCAATCCCAAACTGGGGA 27589 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 27529 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 27469 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 27409 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 27349 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 27289 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 27229 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 27169 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 27109 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [27067] 27066 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 27006 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 26946 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 26886 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 26826 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //