Array 1 467-1096 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000042.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 467 36 100.0 30 .................................... CATTACCTTTATTTCCCGCACGGAACAGTT 533 36 100.0 30 .................................... ATCACAACAAATTATAAGTTTGACACCGTC 599 36 100.0 30 .................................... ATGACACTATACGACATTTGCGCCGCCTGG 665 36 100.0 30 .................................... TATTCTTTGAGTCTACGGACGAGAATGTTA 731 36 100.0 30 .................................... CAGCAGATAATGCAAGTTTCTGCAAGCTAT 797 36 100.0 30 .................................... AGTTCACGTTCATGGGCGTTAGAAACGATT 863 36 100.0 30 .................................... CCTTCCCGTACCGGCAGAATTTCCTTGCGC 929 36 100.0 30 .................................... TAGGACGGGCTCTATCTTCGCAATGTCCTT 995 36 100.0 30 .................................... GAACGAACGTGAACGATTGAGCCAAATCCG 1061 36 91.7 0 ..............................G.T..G | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Left flank : TACGGCGGCGGGCATACTGTTGTTGTGCGGTGATGGGCAGATACTTGCCGTTCACTGTATTTCTGCGTAGTTCCCGTGAGATCGTGGATTTATCTCGGCCGAGGGCCGCCGCAATTCGAGAGATAGAATAGGACTGCGCGCGAAAAAAGAGTAGATTTTCTCGTTCAGATAGAGTAAGATGATGATAGTGGCACATAGGTTTCCTCCGAGATATAGATTTTGTTTGGTAGCATTATTATATCAGAAACCTATGTGTCATTTTTTATAGGTGTTGCACTTGTATTGTAAATTCGCCGGTGAAAAAATTCCCGATTTAGATGAAAATAAGAAGAAAAATACAGTCGTTGTTTTGTAATTTTTGTGAAAAAAGTGTCTCGAAAGAGGCACTTTTTCTGCTTTTCCGACGATTTTTTTCATACTAAAAAGAACGTCGCAGAAAGTGTGCAACGTGCTTTTTAGCAGGTATA # Right flank : GAGGACAGAACAGTTTGACACGTCGTCATTGATATATTACTGTTCACTATCATTGTACTGTAACATGGCATAATTGTGAATATGTAAAGTTTTATTATTTTCTCTGTCTGGGCGGTTCTTACCAAAATAGGATGATTTTATGCCGTTCATATGGTATAATACTATTTTGTAAATGTGTATTAAATTTTTCTGCGAGGAGTGTCTGTATGAAAATCAGTGCTGAAGAAATAAAGAAAATTGCACTGTTGTCCCGCTTGGAAATCAAGGAAGACCAGATTGACGCTGTCGGGAAACAGCTGAACGACATTTTATCGTATATGGATCTCATGAGTCAGGTAGATATTACGGATGTACAGCCGACGGCTCATGCCGTATCCATGTCCAATGTCATGCGCGACGATGTGCCCCATACGTCCCTGCCCAATGATAAAGCGCTGCAAAATGCGCCGGAACCGGAAAACGGCTACTTTAAAGTGCCGAAGGTCATTCAGGATTAAGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 358-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000062.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 358 32 100.0 35 ................................ CGAAGCCCGTCATCAGACTATCTAAACTCATTTAC 425 32 100.0 34 ................................ ACAAGTTTAATCTGTGCAATGCGGTCGCCGTCGT 491 32 96.9 34 .............T.................. GATTTCGTCTTTCAGAAAGCGGATACCACGTTCC 557 32 96.9 34 .....................C.......... TTCCTGCGGGCTGTCAAACGGATTGGCCGTTACA 623 32 93.8 34 .................A...C.......... GTCGCGCTGTGCATGACGACTGCTGTCAGGTTTC 689 32 87.5 0 ............A..G.A...C.......... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Left flank : CACTTTTGTGCAGTAAAGTTTTCCCACAATTATTTTACACTAACTGGCCGAGACGCGGGGAAATGGGGGAGGATAAAATGCTGTCGGATTTAGCGAGATGTGGGACAATGTCGATCATAATGAGATGAACGGTAGAAAGGATTCATCTGGTATAATAAAGATAGCCATACGGATAGAGGAAAACATCATAAGGCCGCTTGTGCGAACCAGAAGTATGCGGCATTTTCCCTTTGGTTCCGCACTGACATATATGGAACGATGCTGTTTGGTGATGCAAAAAAGTGGTATAAATTACTAAATACAGTTATTGATGCCTATATTTGCTGAGGTTGTTTTTGTAGTATACTAAATGTAGCAG # Right flank : TGTTTAAACACTGACAATACTAGGTTTATTCAATATGAATTCTGCAAGCATTTTGACCAGTCAAGAAGCCCCGCAACATGTTTCGTAATTGAGAGGCTTCTTGACGAATAACAGTACTAATAAATAAAATAGCAACACCTTGCCTTAAAGAATATCTCTGCAAAGGATGAGATGCCCTATGAAACAGAACCTAACGTCTTCCGATTTAAAAACGATTCTTCATTCCAAGCGAGCCAATGTCTTCTATCTGGAGAAATGCCGTGTCATGCAGAAGAACGGCCGTATTGTCTATTTGACAGAGACGGAAAAGGAAAATTTGTACTGGAACATCCCGATTGCCAATACGACGGTAATTTTATTGGGAACAGGTACGTCTATTACGCAGGCGGCTATGCGGTTATTGGCCAGTGCCGGCGTTCTGGTTGGGTTCTGTGGAGGAGGCAGTACGCCTTTGTTTGCCGGTTCGGAAATAGAATGGCTGAATCCGCAGAGCGAATACA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 9571-11219 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000062.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9571 28 100.0 32 ............................ TTCAGATTCAGCATGTTCATAATACGTGCGAA 9631 28 100.0 32 ............................ TTGACTAATCGAGGTGACAAGGGGCCATTTGC 9691 28 100.0 33 ............................ AAATTCTTTTTAAATTTCCGCTGACTATTTTTT 9752 28 100.0 32 ............................ TATACAACGTCCGCAAGGGACGTCAACCGGCA 9812 28 100.0 32 ............................ TTGGTGAGTTTGACGAGGACAAGGGTGTAATT 9872 28 100.0 32 ............................ TCTCGCTGTCAACCGATTCAAAGCTGTTTGAC 9932 28 100.0 32 ............................ TGATGGAAAAGGGAGAGGGAAACATGCCATGT 9992 28 100.0 32 ............................ TGGGAAAAAATGGCCGAAGCCGTCGGGGAACA 10052 28 100.0 32 ............................ AAGGTGTAAATTGGATTTACGAAGGCGGATTT 10112 28 100.0 32 ............................ AAGGTGTAAATTGGATTTACGAAGGCGGATTT 10172 28 100.0 32 ............................ GTATTTCCGGGGACGATGGCATTTGCTAATGC 10232 28 100.0 32 ............................ GTAACGCCGGTTAAGCTCGTCGTCATTGTGAT 10292 28 100.0 32 ............................ GTCGTAGACAATGTGCGGAGCGGCTTGACATC 10352 28 100.0 32 ............................ GGTGAAGGCGGCGTAACGATTGGCGGCTTTTG 10412 28 100.0 32 ............................ AATGACCGTCTACCTTTTTATCGCCATCAGTA 10472 28 100.0 32 ............................ GAACGACGAAAAAACTAGATGTCATCGATATG 10532 28 100.0 32 ............................ GAACGACGAAAAAACTAGATGTCATCGATATG 10592 28 100.0 32 ............................ AACAAGACTTCAAGGGATTGATCCCATCCTAA 10652 28 100.0 32 ............................ ACATCTTTGTATTCGTCCGAAGTTTCCCAAAT 10712 28 100.0 32 ............................ AGTACACCGGTAACATAATCAATCACCATAGC 10772 28 100.0 32 ............................ ATTGTCGCCGTCACGGCCCGCCGCAGCTTTTC 10832 28 100.0 32 ............................ TCAGTCGCAGCACGCTTCAACACTTCAACAAC 10892 28 100.0 32 ............................ TTGCGCAGTTAACCGATTCAAAGCTGTTTGAC 10952 28 100.0 32 ............................ ATTAGGAAATTACCGCCGTCGTAGCCCAAATG 11012 28 96.4 32 ..........A................. TTCAACGGCAGCAGCAAAAAAATCCAAATCAC 11072 28 100.0 32 ............................ GCCGACAAGTCTTGTGCGGATACGGCCATGTT 11132 28 100.0 32 ............................ AGCAAAACGAAGAACTCGGCCGAATGATTGCC 11192 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTATCTGCCGCATAGGCAGTTTAGAAA # Left flank : TGGAAATGTTGAATATAAAGGGTGTATTGCGGCGTTTTGCTGATTATGCTGATATTGGAAAGATAAAGAAAATACCATATAAAAAGATAAAAGGCTATGCTGTGTACAGCCGATATCAGCCAGACAGCTCCGTCCATCAAAAAGCAAGACGGTACAGCCAGCGCCATCCTGATACTTCCTATGAACAGGCTCTCCAGATTATGAAATCAAAGAATCGGGCGACGCAGCTGCCGTATATTCAGATGTGTAGCATGACGAACCACAATCCATTCCGATTGTTCATTAAACGGACGAAAGCTGAACCAGGAGAGAAAAATCATTTTGGCAGTTATGGATTGAGTCCTCATTCCGCAGTACCCGAATTTTAACCAAAATAAAATGAGTAAAGGAAAATCCTTGGAAATATGCGGATTTTTGCTATCTGGAAAAATTTAGGGTAAAATAAGGAAAACATACTGCCATGCCAGTATGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : AATTGAAGTTGTGTAAAAAGTGGGCGAAACGAATCATTCGGCTGCGTACATTGGAAGAAAATGGCGGTAGTATCGGATTATGTGCATGATGCCGATCAAAACTGCCGAAGGACGGGAAGCAAAAGGATACTGCGACGTCCTCATCAAATAAATATCATCCACCACTTGATACTGTCGGGAATGTATAGGGGAATGACTCTTTTCATTTTCTATGACTCTTTTCATTTTCTATGACAAAATGAAGCCGTTCGTACAACCATCCGCATATTGACAGGCTCTAGGGGGCATGCTATAGTTAATTAAAATCTATTTATATGCAGGTCAGGTGTCGCAGACTTAATAGAGAAGTCCGGTGAAACTCCGGCGCGGTCCCGCCGCTGTAACGAGGAGCGATGCTGCAATATGTCACTGTACCCCATTGGGTATGGGAAGGCGCAGCGGAGCGATGAATCTGAGCCAGAAGAACTGCCTGACTGATAATCACCGATAGACCTGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2531-244 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000025.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2530 32 100.0 34 ................................ TTACTTGATGTAACTGTTACGACTGACACCAATT 2464 32 100.0 35 ................................ TTTTTCAAAGCCTGCTTCCATAGTACCATCTTGAA 2397 32 100.0 34 ................................ TTTGTACCAGCAGTTCCACAGCATTTTGCCGGAA 2331 32 100.0 34 ................................ ATGAAAAACATATAAATCAGTTATTCGGAACTAC 2265 32 100.0 34 ................................ CAGCAGATAGGCGTCCGCTACGGAATCGGCAAAA 2199 32 100.0 33 ................................ CCGTTGCAAAAAGTCGCCGCCTCGCAACGTCGG 2134 32 100.0 34 ................................ AAATCCCGATACGGACAAAAAAGTATCGGCGCCG 2068 32 100.0 34 ................................ ATATGGGGTAGGTGATATGTATGGAATCAGACTA 2002 32 100.0 34 ................................ TTCACATTGTTACGGCTTATGATGAGCGTCGATG 1936 32 100.0 34 ................................ TATTGACAGCTCTTGTTGTTGACCGTCCTACATC 1870 32 100.0 34 ................................ TGCCATGATATATCAGCTCCTTTATATGCTGTAA 1804 32 100.0 34 ................................ GTCAGCAACGCATCGGGCACGTTTTCAAATTGCG 1738 32 100.0 36 ................................ GAGCAATCAATGAAACGAAGAATACCCGCAGCTGGT 1670 32 100.0 34 ................................ GTCTAAGGCGCGACGGTTCAGGTCGTCAAACAAA 1604 32 100.0 34 ................................ AGAAAGAGGTATTCGCATAATTCCTACAACAAAA 1538 32 100.0 35 ................................ TTTTTGGATGAATTTGTTGGTATCGGTCATGAAGA 1471 32 100.0 34 ................................ CTTTCAGCTCGGCTCGCAACAAATATTTAATAAC 1405 32 100.0 34 ................................ CGCCGTACTCATTGGTATATGCTACGGACGCAAC 1339 32 100.0 34 ................................ GTCCATATCGGTCTTAAATACGGTCGTGGCGTAC 1273 32 100.0 35 ................................ TTTTTCCGGCTCCACGACTGGGGTATGCCCCGGAA 1206 32 100.0 34 ................................ ATCGTGTCCAGCAAGGTCTTTGGTGTCTCGCTCC 1140 32 96.9 35 .......................A........ TATAAGGTAAAGAACAGTGGGCGGGTGCCTCTAGC 1073 32 87.5 35 .........CAC.C.................. AGATACACCGGACGAAATGCTTTCCTACATTTTTC 1006 32 87.5 34 .........CAC.C.................. TTGCTAAACAAGAAAAGCTGAACTACTCAGCTCG 940 32 87.5 35 .........CAC.C.................. GTCAGCATTTCCACACATTCGGCCGGCGTCTTGTT 873 32 87.5 34 .........CAC.C.................. AATACGTTGGAGAACACGGTAGTGAAACCAGACA 807 32 87.5 35 .........CAC.C.................. GCAATGTGGTCGTACATGCCCGGAAATTCCATCGT 740 32 87.5 34 .........CAC.C.................. TGGTCATACTATACAAAGATACTCGTGGTGTGAG 674 32 87.5 35 .........CAC.C.................. GGCCGGGCCATGTTGGATAAAGACGATAATGGTAT 607 32 87.5 35 .........CAC.C.................. GGTAAGGTCGCATTAGATAAACGGTTGAATGGTGG 540 32 87.5 35 .........CAC.C.................. GCCGATTGTTGGGCATTACAGCTCGACAGAATGTA 473 32 87.5 34 .........CAC.C.................. TTCTCAGCTTTGGCTCGTTCGGCCGCTGTGCGGT 407 32 87.5 34 .........CAC.C.................. AAACGCACGGCCGGCGAGCTCATCGAGGAACTGA 341 32 87.5 34 .........CAC.C.................. CTCCTCTACAATTTCCATCGCTCTAAAATCATCG 275 32 81.2 0 .........C........AG.C.A.......A | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 95.1 34 GTCACCCTCAGTGTGAGGGTGTGGATTGAAAT # Left flank : AACAGGAATTGAGGTGGCAGACGAAATGTATATTCTAGTTTCGTACGATATCAGTACGAATTCAGCGGCAGGAAAACGCCGCCTGCGGACGGCTGCTAAGATATGTTTAAACTATGGGCAGCGCGTTCAAAACTCTGTATTTGAATGCGAAGTAGACGAAGGACAATATTTGCAGCTGAAACACCAATTACATGAGGTGATTGACGAATCTGTCGATAATTTGCGTTTCTATCGCCTCGGGAAACACTATAAAAAGACCGTAGAATCCATCGGCGTCGACAAACGATATGACATAGAAGGCCCGTTGATTCTGTAGCGGCTTTCCGGCAATAGAAATAGGCTGTGCGAATCGTAAGCATCGGACATATACCAGGGAGATTCGCACTCAAACAAGTAATATGCTGTCAAAATAGACGGCGATTTTCAGCAAATCAGCTGGATAAAGTTGTATAGGATTCTAGATATGCTACGTTTCGGAGTAAGAGATGCCAAATGTAGCT # Right flank : ACTTAATATTACATTTTTGGATAAAATTATGGTAATAAAAGAATCGTAATATCTGTTATATATTAAATAGAGGTTAATTGTAAAATGAATTTGAACAGGTAATCAAAAAAACAAACATCCATAGTGAAGCTTCATGTTAAAATGGTTTTGCGAGAAATCATCAACAAAGGAGCAATCACTATGGATCACATCCATTCTAACAACATTGAGGACGTACGTACACCCGGCCGCCATCTTTCTTTGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCAGTGTGAGGGTGTGGATTGAAAT # Alternate repeat : GTCACCCTCCACGCGAGGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 2 12875-11116 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000025.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 12874 32 100.0 35 ................................ TGATAAAGTTTTACATTCTATGTTTAAGCGATATT 12807 32 100.0 34 ................................ TGGTTTGCAGGCTGGCGCTGCTTTGTCAAATAGT 12741 32 100.0 34 ................................ CATGCGGTCAGTGTATTGGTTGCCGACTGGAGAA 12675 32 100.0 34 ................................ ATCTTTCCAGGATGGTAGTGCTTGGCGGATATAA 12609 32 100.0 35 ................................ AACGTGTCTTTTAGCAACGCCCGCAGGCTGGCCGA 12542 32 100.0 36 ................................ CGTGGTCTCAGCGGTATCGATAACATGAACTCCGAA 12474 32 100.0 34 ................................ TTTCACCGGTATCTTTTCTACGCTTCCGTATTTA 12408 32 100.0 34 ................................ TTCGTCGCTGCGGTATATGCCGCAGGGCTCGTGA 12342 32 100.0 34 ................................ TTTTCCTGCTGTGGGTCCCAGTGCGGGTCGCGGG 12276 32 100.0 35 ................................ GTATTTATCACCTCAATTCATAGTATTTCTTACAT 12209 32 100.0 34 ................................ TATTAAGACTTGGCAGCCTATTGATTTCTTTACC 12143 32 100.0 34 ................................ TCCCACATCTCCTTGGAGACGATGGCCGGCAGTA 12077 32 100.0 35 ................................ GATGTACCGTTTCGGCTGGCCGTTGACGGTCCGCT 12010 32 100.0 34 ................................ GGCTATGACTGGGACGAAAAGACGAGGTTCCCCG 11944 32 100.0 35 ................................ TGCGTAGGCAGTCATATCGCCGGCCAGCATGGCGT 11877 32 100.0 35 ................................ GTTGGCGTGCAGGTCCTGTAGCCGTCTCCGCGGGC 11810 32 100.0 34 ................................ CCAACGGCATGTCCGCTGAGCAGGCACTCGAACT 11744 32 100.0 35 ................................ TTAATACCTACTACATCTTGACCTGTTAACAAACA 11677 32 100.0 35 ................................ CACTCGTATTATAGTCTGTACCGCATACAGAATAC 11610 32 100.0 34 ................................ CCTGTGGGCACGGCCGATAAGATCCGCAAAGTAT 11544 32 100.0 34 ................................ ACGTCTTCATAGCCCTGTTCGTTCGCAAATTCAA 11478 32 100.0 34 ................................ AATCCATTTACCCAAACCATCACGAGAGACTACA 11412 32 100.0 34 ................................ TGCATATTGCGGGGTCATGACGATGCTGTAGTTT 11346 32 96.9 35 .G.............................. TTTTGGTCGAGCAGCACCCGATACGGCTCCGTGTC 11279 32 96.9 34 ..........A..................... GTTGACGAGAACAAGCCGCAACGCTTCTTTCTCG 11213 32 100.0 34 ................................ TCCCACATCAGCAGCCCGATGACGACCAGCAGGG 11147 32 93.8 0 .........CA..................... | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.5 34 GTCACCCTCTGCGTGAGGGTGTGGATTGAAAT # Left flank : CATTGTCGACGTCAAGGGCGCACTGGAGCAAGTTTCCTATCCGGAACAGGCTGAAGGGAGCCTTGTCATCCAAACAGAAGATCCCTTAGCCGACTGGAATACCGGTACGTTCCGCCTGACCGTTCGGCAGGGACGCGGCTCTGTAGAACGGACGGAGCAGGAGAAGCCGGACGCCGTCATGCCTGTCGGTACCCTAGCGCTGCTGGTCTTCGGCGCAATGGATCCAGCGGATCTGGCATTCAATGAAAAACTATCCGGCAGCGACAAAGCCTTGCAAACCTTAGGAACGTTTTTCCCGACAGAAAAATGCTACATTAACGAATGGTACTAGACGATGAACAGGTGCGAATGGAAAGCATCAGATAGATACCAGGGAGATTCGCACTCAAACAAGTAATATATTGTCAAAATAGACAGCGATTTTCAGCAAATCAGCTGGATTAAATTGTATCAGCTTCTATATATGCTATGTTTCGGATTAAGAGATACCAAATGTAGCT # Right flank : CATATGACAGCATTAGATGTATTGTCAGTTTTGTCAGTTCAAGGCTAGCAAAATATTATATATAATAAATCAAAATATTATATGTAGATATTTTTTATTAGGTATCTATCTTGAAGGTATGGTATAATCAATCATATAGAAGTGAAACGGAATATATAGGTATAGCTAATTATTTTTTAGGATTGGGACGCTATGGATATTGAATGGGATTTGCTGCTGGCGCATTGGGATGCAGAACTGAAGAAAGGGCAGTATATCAAAGACCATGTGAGGAATACGGCTGAGTATATGGCTCGTATAGGTAAGTCTCTTGGGCTGGAATCTATCTGTATTCTTATCGGCCTTCTTCATGACGCAGGAAAGGTGAATCGTGATTGGCAGAAATATATCCGCGGCGAAGCGGCGTCGGGCGGGGATCACGCTGGCGTCGGAGCTTGGTATGTCCAGCATGTGTTGTATAAATATGTAAATAATTCCGTACCTGCCGATACGTATCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCTGCGTGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 1114-215 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSNP01000076.1 Megasphaera stantonii strain AJH120 Megasphera_S14_L001_R1_001_(paired)_contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1113 32 100.0 35 ................................ GTGCAAACGGCGTTGCCGGTGGCGATACCGTACAG 1046 32 100.0 34 ................................ TTTACCGCATGTCTTATCATTGGTCTATATCTAT 980 32 100.0 34 ................................ CTTCAATCGCTGGGTGCCAGACGGCAAGAGCTGT 914 32 100.0 34 ................................ AGCATGATTTGGTTGGCAAATCCCCAGACACATA 848 32 100.0 35 ................................ GTTCATATCAACTTCCATGCCGCCGATCCGCTCGT 781 32 100.0 35 ................................ TTACCGCTGCGTCCCCGGCGTCGTTTCATTTCGAC 714 32 100.0 35 ................................ ATCCCACGAGTCCAACAAGCTATTGACATCGTTTT 647 32 100.0 34 ................................ ACAGACGGGGCTGTCCCGATATTGGTGGGGTGCC 581 32 100.0 36 ................................ AGATACCCGATGACACGAGTACCGTAGTCTACGTCG 513 32 100.0 35 ................................ TCCTCTGGCATGGTGGGTGGCTTAATGCGTATCAA 446 32 100.0 34 ................................ GCATCGTCGGGGCGGTATTTTTCAGCCGCGTCCT 380 32 100.0 35 ................................ TGCGCCATATGCATGCTCTCAAACGAGGCGCCGGC 313 32 87.5 35 ....C....T.C......G............. TTCATGAGGTCGTCGATGCAAAAATCGCTGCACCG 246 32 87.5 0 ....C.....AC......G............. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.2 35 GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Left flank : TGAATCGCAAGGTAATCGGCTGTATATCCAGGTCGCCTACTTGTTGGCGTCAGAGGAAACGATTCAACGAGAATTTGGCGTTTATGAGCGAGTTCGGGACAATTACCCTAAGTACGTTCTTACGCTGGATGAGTTTGACATGAGCCGGGACGGCATCAAGCATCGAAATATTCGCGATTTCCTGCTGGAAAAAGAGTGGAGATAGACGTTGTCCGAGCTATCTGTTTACTGGATTAGATTTTCCCTTTTATGTTCCCTTAGGGATATGGTATCGGAAACAATTCTCGGAAAATCGCATAATTCAGTTAGTGAATGAGATTATATACTTTAATACATGGGTAAGTGCGAATTGCAAGTATCGGATATATCGTGGAGAGATTCGCACTCAAACAAGTAACATGTTGTCGAAATAGACAGCGATTTTCAGCAAATCAGCTGGATAAAGTTGCATCAAGTTCTATATATGCTGTATTTCGGAATAAGATATACCAAATGCAGCG # Right flank : TCAGCTAACTGCAGTAGCAATATCCGTTTTTGACGTGTCGCCCTCCGTGCGAAGACTGTTCCTGTATTTTTTGTATGTACCATGACTGCGGCTTGTATATTTTATAATATGCCCTTATATACTTATTATGTATATAAGGGCATATATACTATTGGGTCAGGAAAATATTTCGGTTAATTGTAAAATGAATTTGAACAGGTAATCAAAAAACAAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //