Array 1 29871-31601 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNW02000038.1 Amycolatopsis acidicola strain K81G1 NODE_38_length_76805_cov_20.9615, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 29871 29 96.6 34 ............................A ACGTTGCAGCGAGAACGACGTAGCTGTGAAAAGC 29934 29 96.6 32 ............................C TGAGCCAGCCACCCATTACCTCCCGTGCTCTA 29995 29 96.6 32 ............................C CGCGGGACATGCCGATCGTCTTCCAGGTTGCC 30056 29 100.0 32 ............................. ACCTTCGTAGCCAAGTGGGGTCGACTCCCTTA 30117 29 100.0 32 ............................. GCTCGAAGCACGCCCGGCCGATCTTCAAGGGC 30178 29 100.0 32 ............................. CTGAGGAACGGGAAAGGCCATGACACAGGGGA 30239 29 100.0 32 ............................. TACGCGACCGGATCCGTGGTCCAGTCGCCCGC 30300 29 96.6 32 ............................C TGGTGCGCATCCGGAACTCGTGGGGCGTCTCA 30361 29 100.0 32 ............................. GGCGTGGAGTCTTCCTCGTGCTCAACGATCTC 30422 29 96.6 32 ............................C TCCGGGAAGTGGTTTTGGCAGAGTTCGAGAAG 30483 29 96.6 32 ..........T.................. CTTGCCGCGGCGTCACCATTCGATGCCTCGGA 30544 29 100.0 32 ............................. CTTTGGAGGACGCGCAGAACTCCGCCGCCGCT 30605 29 96.6 32 ............................C CGCCTGGGGTAGCGGCGTTTCTGGTCCTCGAG 30666 29 96.6 32 ............................C GCGAGTGCGATCCCAACCGTAATCGCGTTGAT 30727 29 100.0 32 ............................. CTCTTGCCGCCAGCGTGGGACCGTGCCGGGGA 30788 29 100.0 32 ............................. CCATCGAACACGACGGGGCCGGCGAGCTCGAT 30849 29 96.6 32 ............................C GAAGTAGATGAGCGAGTCGCCCGAGCCGTCCA 30910 29 100.0 32 ............................. GTTGACGTCAAAGGCAAGGCTGATGTGGACAC 30971 29 96.6 32 ............................C GTCGCTATCGAGGTGGTGAAGTCAAAGTTCGC 31032 29 89.7 32 .........C..T...............C GGCCTTCGGAATCGTCGAGGGCGTCCTCGTCG 31093 29 100.0 32 ............................. CGGCCGGAAGTCCCCCCGAGGCGCGAACTTCA 31154 29 93.1 32 ...G........................C ATTGATCGCCCGGCGGGTGTGGACCTTGAGCG 31215 27 82.8 31 ..GC.............A....--..... CACGGAGGGTTTGAGTACCTCCCCAGAGATC 31274 29 86.2 32 ...G...........A.........C..C TGGAGGTCCGCCAGAACCCGGCCGGTGTGGTG 31335 29 89.7 32 ...G...T......C.............. GTCAGGATCGGGCGGACCGATCTTCCATGGTC 31396 29 93.1 29 ...G...............C......... CCAGGTCGCCGTTTTCGATGGAGCGAAGC 31454 28 75.9 31 A....GT..C.......-C.........A AAATGAACGCCCCACCTGTTTCCGCAGGTGG G [31456] 31514 28 79.3 28 ..-.G...A...T.......A.......C CTTGCCCCAGCTCAGCGTCCGGGCAGTG G,C,A [31518,31531,31543] 31573 29 82.8 0 ..TG.................A.....TC | ========== ====== ====== ====== ============================= ================================== ================== 29 29 94.4 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GAAAATCCCCGGAGCGGAGGATCTTGCTCAGCCCTTGTTTTCGCGGGACCGATGGTAACGCTGGCTCTGTCACGAAACCTCCGCTCCTCGACGGATTTTGTCAGTCCGCGGCGGCGGATACTGAAACCGATCGCCACGGACGACTGTCCCCGAGGGGTTCGCCGACAGCGGGGAACCGTCATCGCTGCAGGGGGATGAGCAGTGAATGGCCCGCATCGCTGCGAGCATCACCGCCTACACAACCGTTACTTTCCGTAATCGATGACCCGCGAGGATGCCTCGGCAGAAAACTCGACGGCTTGAGTGCGGCCACAGGTGCCTGTTGGCATCGTGTTTCACGAAACCGCCTGTCAACCGCCCAGGCCGAGCACGCACCAGCAAGGAGTCCAGTTCGCCGCAGGTATTCTTACCCGCGACGCACGTAGGGTCCATAATTTGATCCCGCAACACCAGAACATTGAAAACACTGTTTCCACCCAGAAAACGCCTGCTCAAGAAGT # Right flank : CGCGTCGGCAATGGCCGGAAGGCTGCGTCGTCGTTGTCCCCACGCGAGCGGGTTCTGCGCGCCACTTCGCTTACGACGGCTCCAACTTCGTAGCCCCTCCAAACACCCTTTAAGCACCGGCCCGCTGAATCGCCGGCTCGCCCCGGTTCCGATAGCCGTCGGGCTGCCTGTTGACCTCCGCGGTCGGTTGGTCCGGCGCCGGTGTAACGGCGCGCGCCCAGATCGCGATCGGGTTCAGCGTGACGGGGGTTCTGGGCGTTGAGGCCGACGAGGACAGCTGGCTGTCGGCGTGGGCGAAGTCGTTCTTCGCCCCTGAGTCGGGCGTGACCGGATGGTTGCCGTTGTGGCAGCACTCGGTGGACAGCGGTGCGGTCGCCGGGTTGCTGGTCGATCGGTGGGTTTCCCACCAAGTGGTGGACTTGATTGCGGAGGATCTTCCCCAGGGCCGGGACGATGCGCGTTTACTGGCGCGCTGGCTGGCTGGGGTTCACGATGTGGGC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46405-46799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNW02000038.1 Amycolatopsis acidicola strain K81G1 NODE_38_length_76805_cov_20.9615, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46405 29 100.0 32 ............................. GCGCCCACACGATGGATCCCTTGCAGGACTTG 46466 29 100.0 32 ............................. AAACTGGACCAGATCCTCCAGAAGCTCGGCAA 46527 29 100.0 32 ............................. ATCGGTGTCACCGTGGCCTCGGCGACCACGTA 46588 29 100.0 32 ............................. GCGGGAACCGTGGGGAAGAAGGTCGGGATCGG 46649 29 100.0 32 ............................. GCCACGAACGCATCACCGCCCAGCATGCCGAA 46710 29 96.6 32 ............................G AAGTGGTCGTGCTGGGCGCTGCGGTAATTCGG 46771 29 69.0 0 ..CT.G.....TCC......A.....T.G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GTGCTCCCCGCGTGAGCGGGGATGGTCCC # Left flank : CGCGCCGGCGTCATCACCGCCCTGCTGACCGCAGTACGCGAACGCAGCCAACTAGTCGGAGCACGGAGGTTGTACCTCACCTCCGAACCCGACAACGCTGCCGCTCACGCCACCTGGGCACGACGAGGCTTCACCAACCTGCCCGGCGACCAGACGACCAACGGCGTCGCGGTGACCTCCCACTACAAAGGACCAGGCAAACACCGAGCCATCTACCAACTCCACCTCTGACAGTGCAGCGATCCCGTGAACCCCACCGGACAACGTGGCTCGTAACCATCATCGAGCCCGGACCATCGACCATCCTGGAACAGTCCCTACGCCGGGTGCCACCATGGACGGAAGGCGACACGATGTTCGGTTCCGGGGGACGCGGGCCGGATAGCTCTAGCTCTACTGGGAGGTCACACACGGCACAGCAAGCAGACGGCCAGACTTCAAAACGCAACACGCGAGCACAAAAACACTGTTTCCGCCGGAAAGATCCCTGGTCAGGAAGT # Right flank : GTACCGGGAATGCGTCCGGGCGTGCGCTCCAGTGTCTTCTCCCGCGCAAGCGGGAGAAGCCCCTGGAGTCCGGTGCCGCCGACTTCGGCACGAAGGGGGCCGTCGCGATCCGGCACTACATACCCGTCTTCCCTGCGCGAGCGGAGTCCCCCACCGTTTCCAACTAGTCGCTGGCAAGGTCTTCGGCAGGCCACCGGGTCAGGAACGCGCCCAGCGCGTTATCGATGAGCACTCCCTCCTCCGTAGGTTCGTGGCCTGGTCCAAGGTGCTCGGTGAACGCATCGCCCAGCGCGTCGATCACTTCTTCCTGCTGGTCCAAGGTGGGCTTCTCCTGAGCCTGCAGAGCCGCTAGCAGCACTGGGTCCCGTTCGGCGAGCAGGCGCACCACAACAGGGCGAAACTCCTGGGGGAGGCTGTCGATCACGGTGGTCATTCATGCCTCCATCCAGCCCGGGATCGCGCCCACGCCGTCGTGACTTGTCCTTGCTCGTGGAGGTTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //