Array 1 54567-53058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000019.1 Arthrospira platensis FACHB-971 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 54566 35 100.0 34 ................................... CATCATCTCGATGGCATGGGAGTGTTCTCAACTT 54497 35 100.0 36 ................................... CTGCCCAAGGCCTGCCGCCCCTTAAGTCCCTAAAAC 54426 35 100.0 37 ................................... GTTACATCGTTACAGATGTCTACTTTGGCGGTCGCGA 54354 35 100.0 32 ................................... CAGTATAAGGTTGCATATGCACATGTCAACCA 54287 35 100.0 41 ................................... AGGAAGGGTGGATCGTGGTATTGACATGTAAACGAGGTCAA 54211 35 100.0 36 ................................... TGTTTCATGGTCTACAAGGTCTACAAGGGGGGGCGA 54140 35 100.0 37 ................................... ATTGGTGTCCTGAGATATCATTGTGGTATCAAGACAA 54068 35 100.0 35 ................................... TGCTTCGTCCCCTTCGTCCTTGGGACTGGGAACTT 53998 35 100.0 40 ................................... CTTTGATGTCTTTATTCCCAACGGCTACGGCGGCTTCAAG 53923 35 100.0 35 ................................... GAAGGAAGAGGCTTTGTCGTGGAAGGAAGCGACAA 53853 35 100.0 34 ................................... CAGTGAACGATGTAAGCATCATACGGTCCATATC 53784 35 100.0 32 ................................... CGAAAGACAAAGTTTTTGTCCCCCACCTTCCA 53717 35 100.0 35 ................................... TACAAGGTCCTCCTCCACGGGGAACGACAAGTATT 53647 35 100.0 34 ................................... CGGAGGAATGTTTGTTGTTCGGGCAGCAACCTTT 53578 35 100.0 33 ................................... GAATAGGTCTAGACGCATTCAAGTACCCATCTG 53510 35 100.0 34 ................................... CAGTTCGCTCCTTAAAGTGCGAACTATTTGGGTT 53441 35 100.0 32 ................................... CAGGGGGGAAGCCAAGGTCTATCTCGGAAAAA 53374 35 100.0 36 ................................... AAACTAATCTCCGCTTGTATCCGTGAAGGGGAAGTT 53303 35 100.0 34 ................................... TAGACGACGCATTAAAGTACTACCCATCTGGCTA 53234 35 100.0 37 ................................... GCTAATAACCTTCTTTTTTTTGCTATTCCATTGTCAA 53162 35 100.0 35 ................................... CTGAGAATTTGGGTCACGGTGCAGATACTGTACTG 53092 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : ATGTTTTTGATGGTAGCTTTCAGATTCGTTTAACTCTCCCAGGGCATCGTAAATATTCCCCAAGCCGTTGTAACAAACCGCATCACAGCCCGGATTCAATTTTCCGAGGAGAGATTTATAGAGTTTTTCTTGTTGGTCATAATAACCCCAAACTCCCAATTGGTCGTGTAATTCTTGGTTGCTTTGGGGGTCAGGAATCACTGTCAAAATTTGGGTCGCCCGCCGCCAATCTTCCACCTCCCATAGGTGATAAAAAGACTCCAGGTAATGCTGCACCCGTTGCAGGGGGGTGGCTTCTTGGGGGGGGATGCTTTGATGACACAAAAAATATTCGACGGCAGTATAAGTAGCTAACTGCTCGATGGGAACTGTATTGATATCGATATCAAGTTCATCCCACAGCATTGGATGTCTCCTTTTGGGTATCCCATTGGCTCTGAAACAGTTTAGCACTACTTCCGTTCAAAAAGCGATCGCTTTTTGACATTTACAAAAAAGTA # Right flank : AGCATAAGAACGAAATCCTTGCTCTGAAGGGATTCTAACCCACCAATTCTATAGGGGTCAAGTCAGTACCCCAATTATTGACATAGATTAGCAATAATTGAGTTAACAAAATGACTGAAACCCGGTCGTAGCAGTCCACCTATAGGGGTCAACGAAAAAATCAGTGATTGGGCGGTTTGCCAGACCCCTGTAGGTGAATGGATGTTACAGGTCAGACCTGGGGCATCATTTGGAAAAAGCTAAATTTTCCACAACATCGGTCGATAGGTCTCCCGTTCTCCCATCAGACAGGAGATGTACTCCCACACCTGTAATTCCAGACAGCGATAGTAGCTGACCTTGTGACCTGTATGGGGATGGGTGGTGGAGAGGGATAGCTTGTCCTGCCAGTGCTTGAGATACTTTTTCAGAGCATCCGAATGTAGGTAAACTGATTCATTTAAGCTGAACAGTCCTGAACATTAATTGACAATGCTCGGACTGTAACTATAGCAATACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 32399-29178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000003.1 Arthrospira platensis FACHB-971 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 32398 37 100.0 45 ..................................... GGACGGAAGTGGGGTACTAAGATTTCTCCAGGGTTCAATTTTGCG 32316 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 32241 37 100.0 43 ..................................... ACCGAGCGAGGTTCTCTCACTCTCAGGGAGCCTATAGTTGCAG 32161 37 100.0 45 ..................................... AATGCAACTGATGCTTTTCCTCTTTCGATTGCCCCCCAGTTTAGT 32079 37 100.0 42 ..................................... AGAAACCATATTTTGAAGAAATACTTTGAACTTTTAATTGTA 32000 37 100.0 46 ..................................... ACTCCCCATTTCTAAGGGAGTCAATTGTCCTTTAGGATCTCTAAAG 31917 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 31842 37 100.0 45 ..................................... TTCGGAGGGGCCGGTACCCCTTTATGACCGTGACCTCGCGCCTTA 31760 37 100.0 42 ..................................... TAGACTCGGATTTGATACCCGGTTTTCCCAGTGAAGGGGTTT 31681 37 100.0 45 ..................................... TACTTCCTGATAAAGGCATAGTTGGACAACACGATGGCCGTGTTG 31599 37 100.0 46 ..................................... TTCCAGCCAGTCTTCTATTTGCTTATGTCCTCGGACGAGGAAGTCT 31516 37 100.0 41 ..................................... TGTTTATCGAGTATTTGATTGAACTCCTTGCTTTTGACAAA 31438 37 100.0 42 ..................................... ATCGCTTTGCTCATTCAGCATCGCGCGTTGTGCCATATCAAC 31359 37 100.0 36 ..................................... GAGCCAGTTATCATCAGTGTAATCAAGCAAAGCCAT 31286 37 100.0 54 ..................................... CTGGGGGGCAAGGATGGTGCAGCTCGTGCTGTGGCAAAAGAGATCGCAATCACG 31195 37 100.0 42 ..................................... CTTGCAAGCCGAAATGTCGGCTATGGCTTTGCAAACGTCTTC 31116 37 100.0 44 ..................................... ACGGTAATGAGCGCCTGGAGTGCTGCAGCTTTCTCGGGAGCCAC 31035 37 100.0 45 ..................................... TTGGACTTTAGGCCCTTGTCCCAACTTTTTGAGACTTGACTTTTG 30953 37 100.0 41 ..................................... TGTTTCTTGCGCTTTGTTACTATGGCTGATAGCCACAGCTT 30875 37 100.0 43 ..................................... CACCTTTAATTTGAAATGCGTATAACATCATGTGTTGCTCCTT 30795 37 100.0 50 ..................................... CCGTCAAAATAGCCCGTTATGTCTATGCTCACCCCGCTCTCGATTGCAGA 30708 37 100.0 39 ..................................... TCTTCTCCGCGACGGTGAGAGGTGGGGAACTGCCACCCA 30632 37 100.0 39 ..................................... AAACTGAAGGCTAATGTTTTCTTCGACCTTAGAATACTT 30556 37 100.0 45 ..................................... CTTCTATAGACATGGATCTTCACTCACTTGGAATTCACTTCTCTA 30474 37 100.0 43 ..................................... GAATCCGCGAGCTCGAGCAACGCGTTTCCCACCTTGGGATTGG 30394 37 100.0 43 ..................................... CTGTCGGTGATTATCTCAAGGAGATCTAACTCCTCTCCCCCTC 30314 37 100.0 38 ..................................... TTTTTACTATTGCAGGGGGAGTTGATGTATCCTCCACC 30239 37 100.0 42 ..................................... AGGGATGAAGTCTTCCTCGACGATATCAATACACGCTTCTAA 30160 37 100.0 44 ..................................... GCTACCCTTGTAAGGGCGATACCCGTCGGACCCTGGAATCCCCT 30079 37 100.0 44 ..................................... GTAGCTGTAGTCATTGTTGTGATAATCTTTGCTACCGCATCGCT 29998 37 100.0 39 ..................................... GTGGAGTTAACTCGTCTCTGTCACTTCTTTTGGTGAAGT 29922 37 100.0 39 ..................................... GACCGAGGTCCTCGAGACCTGTGCCCCCTTAATAACGAT 29846 37 100.0 45 ..................................... ACTGGCAAGCCACCGGCATAGCCAGCCAAGGAGCATTTATCGCTC 29764 37 100.0 44 ..................................... ACTTAGGTTGATGTAGCCATAAATAAACCCCCTAAATTTAGGGG 29683 37 100.0 42 ..................................... ACGCGCGTGTCGATACTCTTAGGGTTGTCAGGGTGATACGAT 29604 37 100.0 47 ..................................... CTGTCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATA 29520 37 100.0 38 ..................................... CAGGGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAG 29445 37 81.1 42 ...TA.........G..T..T.TC............. AACCCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACC 29366 37 83.8 38 T..TA............AAG................. CAGGGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAG 29291 37 86.5 40 ...TA............AAG................. AGCTTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATA 29214 37 89.2 0 .................AAG..........T...... | ========== ====== ====== ====== ===================================== ====================================================== ================== 41 37 98.6 43 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TCGCGGATGTGGTGGCCAATCTTGGCGACAGGTTCCCCGATAGCCAACTACACCTCACGCCTCCCCTAGACCACAGCACACACCTGGGGGATTTGATTTGTACTTGGGCGAAATCTTACCTCTAAGATATCTTCTCCCTGCTCGGGTGGGGGGTGATTCTCATAATTATTGGGGTTTTTTGAGGCGATCGACCCTCCCCAATATCTCTGTTGGTTTCGGGGTAAGTGTTTGGGCTTGTGTAAAGTAATGTTACAGATTCTCATAACCTCGCGCGAGTTTTAATTTGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACACTCTGGCGCTCTCTCTGATACTATTAATTTCAGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTATGCTCGCACAAACGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGCATAGG # Right flank : TTAACTCCACAAGGACACCTCGTCGCTTGTGGTGAAAGCGACCGTCAGACCCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCAGCAATTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGAAACCCCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 103342-105990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000003.1 Arthrospira platensis FACHB-971 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 103342 37 100.0 39 ..................................... GTCCGGTGGGCTTCATAGTAGCTGTAATTTGGACGGAAG 103418 37 100.0 44 ..................................... TTCGCGCGATTAAAGCACGTAATCAAGACATTTGATTTGCCACA 103499 37 100.0 44 ..................................... TGTTGGGCTCGTGGCAGCGCAATGCTGCGCTCACACCGCCAGAT 103580 37 100.0 44 ..................................... CGCCCATCCCACGAGGCAATCCTTACCTTGATATCTTTTCTGAA 103661 37 100.0 41 ..................................... TTAGAATCAAATAAGGAAAATAAAGAAATATTAGTTTTAAT 103739 37 100.0 46 ..................................... CCAGGCTTTGAGGATAGGGTAGATATCCCGCAGACTCATCACCCCG 103822 37 100.0 44 ..................................... TTTGAAACCTTCCTTTTCTAGCAACTCGACAGAAGCGATAACTA 103903 37 100.0 40 ..................................... ACTCTTTTATTCTATGTAGTTCCGTGTAGTTGTAGTATAA 103980 37 100.0 47 ..................................... CTCCTGCGTTAACGCATTTTTCGACTACGGAATCGAAATCCTGCAAC 104064 37 100.0 48 ..................................... CTTAATCTTGTTTATTGCTTAGTTTCCGAGATAATAATCAGCGTCCTC 104149 37 100.0 38 ..................................... CTATGAACGGGACCTCCACCTCCACGGATAAGGAGTTT 104224 37 100.0 45 ..................................... GTAACTTGTTTTCCTTCTACGGTTGTCACTAGAGAAGCAGATCTG 104306 37 100.0 41 ..................................... GTTCGTCTTGCAGGATAGCATCTGCTCGTTGATTCAGTTCA 104384 37 100.0 43 ..................................... AGTCGTAGGTACTGGAACCGCATTCACCGCTGACTTTGCTATT 104464 37 100.0 48 ..................................... TTGTGAATTTTCTACTGTTTCTCCGTTGGCACTTATGTCCACATAAGT 104549 37 100.0 40 ..................................... CGGCCCGTAGGTATACTACCAGTTCGAAGGTAGTCCTGAA 104626 37 100.0 43 ..................................... ATGGGCATTGTCGTTTTACTACAATCCTCCCTTTTTACTTTTT 104706 37 100.0 41 ..................................... CAGACATGATTTGTATGGATAAATACTCCCCCTTCTGGGTG 104784 37 100.0 43 ..................................... TTAGCTGTCTTTGGTGTTCATTCATCTGGAAATCCTCAGCAGA 104864 37 100.0 41 ..................................... TAATTCAGGGTGTTACACCAAATAGGTGTATCCGCTTCCCA 104942 37 100.0 41 ..................................... TTATAATATTTTTAAAGAACAAGAACCAAAACAAGAACAAG 105020 37 100.0 39 ..................................... TTCGAACAATAGCAGTTCTGAGATTATCAAAATAATCTT 105096 37 100.0 44 ..................................... TTAAATGACCTCATAGAAGGTATTTGTAAATTATTTCCTTTTAT 105177 37 100.0 36 ..................................... TTCTGACCGGGGAGAAGCCCTCCCCTTACCGAGTTT 105250 37 100.0 42 ..................................... TATGCTTTTGATTCCGCTTCTTTTATCTCTTGTCTAGTGGCG 105329 37 100.0 41 ..................................... AGTCCATATTTTAAAGTACCCGGTTACCTTTTTATTATTTA 105407 37 100.0 45 ..................................... ATAATCCACCTTCCGATTTGACCGTTATTCTTTACAGCCAACGGA 105489 37 100.0 42 ..................................... GAACCTGGGGCATATTACCCTCTTGTCCTGCAGAGAAAAGCC 105568 37 100.0 39 ..................................... TTTAACCAGACTACATCACAGTCTGTTAGCGCTTCCTCG 105644 37 89.2 43 .................AAG...C............. GATCGCAATTCTCTAGTGCCCTTTTCCTGTGATACCCGCTGAG 105724 37 89.2 39 .................AAG...C............. TTATCGAATGTCGTCTTAGAGTGCTTTTTTGGATTTGAA 105800 37 89.2 41 .................AAG...C............. AGGGGGAAGACTCCCCACTGGTAAGCGCCATATTCTCCCAG 105878 37 89.2 39 .................AAG...C............. GAAATCCGAGCGATTCCACTGGGTTGGTTGTGTTACTGT 105954 37 86.5 0 .................AAG...C............G | ========== ====== ====== ====== ===================================== ================================================ ================== 34 37 98.3 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CAGGTGCATTGGACTCAGTTCACCGCTGACGGACAATCTGGGGATGCCAAAATGTTGACAATTGCTGAAATTTCTTGGGGTGGACTTTGGTTATCTTCCAGGGTTAGGTGGGCTTGAAGGTCTCTCCCCTGCCCCAGGGAATGAGTCGGTGGGTTGATTCTCATAATTATTGGGGCTTTTTAAGGCGATCGACCCTCCCTAATGGATGGATTCCTTTCTGGGTGAGTGTTTGGGACTTTGTAAAGTTATATGACAGATTCTCATAACCTCGCGCGACTGGCAATCCTGGGCTAGTTCAGGTAAATTTGAGCTAGAAAAAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCACTATGGCTGATAATATATATCCAGCGAAAACAAAGGAATTTGCTCCCCAAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGTACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCTAACTGGTGTGTTGATTTTCTCAGGGTCGAAGTTGATAGAGGTCCGCCAGTGGTCAATGGGGTAGTTAATAGCCATCACCTTTTGCGACCCTAGAGTTAGGGATTCATCCCCAAATTGGGTGGGGTATGATGGTGCAAAATCCGATTAATAATCCCACTGGTAGAAGTAGGCATTTCCACGGCAATTAGGACAATCTTGCCGCCATAGCTTTGAACCGTGGGCGCTTCCGGTAGCGTGTCAATGGTGTAATCACCACCCTTAACATAGATATCAGGTTGTAACTGTTCAATAATCGCCCTAGCAGTGCTTTCTGGAAAAATCACCACTGCATCTACGGGTTTTAAGTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCAGCCGAGTGGGGTTTAATCAGGCGAACAGATCGATCGCTATTGAGACCGACCACCAGCGATCGCCCTAAACTTTTGGCTTGGGTCAGGTAGCGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 27423-29397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000057.1 Arthrospira platensis FACHB-971 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 27423 37 100.0 42 ..................................... TCAGCCATCACCGGAAAGCCCTCGTCATCTGGCATCGCTTTA 27502 37 100.0 36 ..................................... CCCGGAGGGGGAGCCCATACTGAACTACCAATTTAG 27575 37 100.0 37 ..................................... CTTTGACCCGGAGAAGTCTTACCATATCGTCTTCAGG 27649 37 100.0 38 ..................................... ACGAAGAGGGAGAACGGATGGGACTCCGACATCCGTGG 27724 37 100.0 44 ..................................... TCGACATCGGTATCTAAATGCCCATCAAACACTCTGCCTATCAA 27805 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 27883 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 27966 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 28044 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 28116 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 28193 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 28272 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 28349 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 28427 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 28510 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 28588 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 28660 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 28737 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 28816 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 28893 37 100.0 44 ..................................... TACTGTTAATTCTAATTTTTCTTTTAAAAAGCTTACTATACTGT 28974 37 100.0 36 ..................................... TTTTATATAGATTAAAGGAGGTTTATGCCATTTTCA 29047 37 100.0 41 ..................................... TTTGAAGCCCATTTTATTTTCCTCAAATTACAACAATAAAA 29125 37 100.0 42 ..................................... ATTTTCTAAATCCTGAACCCAGTATGTTCCGCCTCCTACGGG 29204 37 100.0 45 ..................................... ATAATATTATTTGATGACCAGGGTACGTCTCAGGTCGTTAGGGGA 29286 37 89.2 38 .................AAG.A............... GGCTAGGGAATGCCGATCGCATTTTGTGATTTTCCAAA 29361 37 83.8 0 ...AT................AA.......G.....G | ========== ====== ====== ====== ===================================== ============================================== ================== 26 37 99.0 41 GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTGAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCGACTAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCTTACGAACCACCAGACTTTCTCATTTTGTAAGGGTGGCGATCGTCCCAATTTTGATGGCTTTGGGGCTGAAATGCCCTTGAGTCAATGATTTTCAGCAATGTAAAGTTATATTGCAGTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAAGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGTTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GGCGAGAAAACCGAGTCTTAAAAAGCCCCCAGGGTGAAGTCTTGTTAATGAGGGGGTAGGGTAGGGAAACAGTGTCAGTAGAAGATATTTCCCATCAATTAACCTTCCACTTCTCCATGGGTTTGGTGGGGGGAATTTCCTAACTTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAGCCAAAATGCTGAATTTCCAAAAAGTTCGCATAAGCCGGGGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCTAGAGTTGCCGCGCTTTCCAGGGGACCCACAAAACTGCTATCTCGGTCTAAAAAATAAGGTTGTTTGACCCAATGTTCCATCTGGTTATTGTTGAGAAAATAACAGCCAGCGTGGGGGTTTAAACTGCGATTAAATTGAATGGGTTGCTCCATCACCTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCCGTCACATGGGGTAATAAATCCCCATCAACATAGGCTTTATTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 4706-5105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000086.1 Arthrospira platensis FACHB-971 contig86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 4706 35 97.1 40 ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 4781 35 100.0 37 ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 4853 35 100.0 35 ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 4923 35 97.1 37 ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 4995 35 100.0 41 ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 5071 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Left flank : AATCGGTGCAAAATCTTTGGGTTAAGACTCTTTTGGAAGCTTATTGCAAAGACCTTGAAATAGGTGCAATTGGGTATGCTGATGGGGTTGAGACGGTCTTACTAAACACCCCAGCGACACAGTGGGAGAGTATTTTAACAACCTTGAAAGGGCTGAACCAATCACTTTGGGGCAGACAGAAAATTAAACAGTTATTGGAGCGACGGGAGAAACTTAAACAATCTCCTCTGGAGGAACAGGATTTTGATGAAATTTTTCGAGACTATCAAGAAAAAATAGAAAAGTATATTGCCCAACGCAATCGCCGCTCCTATTGAAAAGCGATTGAATTTTTACAAAACCTGAAATCCATTTGCGATCGCACAGGTCAGCAGTCTCTTTGGGATTGTTATATTGAAGTTTTGCGATCGCGTTATGCCAATCTCAAAACTCTATGGCTTGAAATTGATGCTTCAGATTTACAGTTAAAATAAATCATTTTCATTGATTTCAGTCAACTC # Right flank : GAGTGCCGAGTTGAAACCCTTGCTCTGACTGTACTCTAGCACTCAAATTTGTGGGGGTCAAGCAAACACCCAAATTATTGAGACATATTTGCAATAAGACCCCAGAAAAAATGGCTCAAACCTTTACTCTGACTGAGCTTTGTGTGGGTCAACGAAATCATCAGGGTTTCAGCGATTCTTCAACCCCCACAATGATATTTACCTTACATCTTTGTTAGCATGGGCCGATAGACTTCCCGCTCTCCCATCAGGCAAGAAATATACTCCCAAACCTGCAACTCCAAACACCGATAATAACTAACCTTGTAACCCGTATGGGGATGAGTGGTTTTCAAAGAAAGCTTATCGTGCCAATGCTTCAGATATTTCTTGAGAGCATCGGAATAAATATAAACCCCACCCCGTTCGTCACTTGGGGTAAAATCTTCCGGGGTAAAAATTCCCGAATTCACCAGATAGATAACGAGAGAATCCACCACCGGGGCGCGAAACTCCTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 11258-10268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSX010000086.1 Arthrospira platensis FACHB-971 contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 11257 35 100.0 38 ................................... ATCAATGATGGTTACTCCTGGGTTTCCGCCAGGCAAGA 11184 35 100.0 38 ................................... TGTCCATTCCTTGGGCACTGGTTTCTGCCCTTGCTCTG 11111 35 100.0 41 ................................... GCCAGTAGTTTGGATCGCTATGGCAGTAGTTACCAGTACTA 11035 35 100.0 39 ................................... TACGGTATTTTCTAGCATCTGTTTAGATACTGTAAAGTT 10961 35 100.0 37 ................................... CAACCTTTATCGCTGGTCCAGGCGGAAGGTGGAGAAT 10889 35 100.0 41 ................................... CGGACTATAGTTAGCCGATGCCATCTCCACAGGAGAGAAAA 10813 35 100.0 38 ................................... CTATTTATTTCGTAAATTTTAGCGGGGCAGACCCCGCT 10740 35 100.0 34 ................................... CATGGGCTATAATTAGCCTTAGCCCATACGGTTA 10671 35 100.0 42 ................................... TAAAAGCATCTTTCGCAGAGAGATAACTATTGTAGCTTCCCA 10594 35 100.0 35 ................................... GGGTCATTTCCAAGCGATGCGACGATGATGTCATC 10524 35 100.0 43 ................................... GATCAATGTTGTTAAAACAAAGTTCCGCAAGTTGGCTATCAGT 10446 35 100.0 39 ................................... CTCGTAAACTTTTGCGGGGCATGACCCACTTCCCCGCAT 10372 35 94.3 34 .........................A.......C. CCCACCAACCTCCCACTCAAAGGAGGAGGCCTAA 10303 35 74.3 0 T.........A.T........C...C...A..GCA | A [10295] ========== ====== ====== ====== =================================== =========================================== ================== 14 35 97.8 38 CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTATTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATTTGCGCTCTGAAGATTTAGAAAATCCAAGGAATCAGAAGATTAAAGATACGGTTCGTGTTTCCTGTTTACCCACAGATATTATAGTACAAATGAGCCAAATTTATCGCCTTGTTGTTGAGTTGATGCCACTTTCTGGCTTTCAAAATGTACAAGATTATCTAACGGTGAATCAGGAAACGGGCGATCCGATTTAACCTTATTATCTTTACTCGGAATTTAAGGAGTGGGTTGGGCAAATTTTGGATCGCGAGCAATAATCTTGTGGGGGTCGGGCGATCGCTGAAACCCTTATTCTTTCGTTGAAACCCCCGGAAAGCCTTCTCTGTCTAAGTTTCAGCTATTCTTATTGGGGTATTATTGCAAATATATCTCAATAATTTGGGTGTTTGCTTGACCCCCACAAAATTGAGTGCTAGAGTACAGTCAGAGCAAGGGTTTCAACCCGGCACT # Right flank : AATAACTTGAAAAAATACCCTCAACTTTTGGGTTATTTTGTTAGAATTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTTTTAAACCACTCGATATTCAGCTTTGGGAACGAGCTTTTGCAAAATGCGCTGATGATTAACCGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTTTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCGAAGAATTTGCACAAAACAGGGCAGGCAACCCTTGACAAAATCAATTATTTGTGCAGCTCAACTGTTCTTTGAATTCAACAGGCAGATCGTCCCATCGTTCCCAGAGCAAATCCATCAGCGCCAAATGTCGAAGATCGGTTTGAGTCGGGCGGCGGTAACGTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //