Array 1 2906-1475 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXE01000111.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU01-1-31-1 NODE_111_length_8116_cov_19.5805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2905 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 2844 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 2783 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 2722 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 2661 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 2600 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 2539 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 2478 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 2417 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 2356 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 2295 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 2234 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 2173 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 2112 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 2051 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 1990 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 1929 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 1868 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 1807 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 1746 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 1685 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 1624 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1563 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1502 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34148-31983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXE01000027.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU01-1-31-1 NODE_27_length_49434_cov_17.807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34147 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 34086 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 34025 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33964 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33903 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33842 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33781 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33720 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33659 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33598 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33537 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33476 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33415 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33354 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33293 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33232 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33171 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33110 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 33049 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32988 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32927 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32866 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32805 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32744 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32683 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32622 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32561 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32500 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32439 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32378 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32317 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32256 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32195 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32134 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32073 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 32012 29 96.6 0 ............T................ | A [31985] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //