Array 1 1375864-1376157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWE010000008.1 Emergencia timonensis isolate MGYG-HGUT-01547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1375864 31 100.0 33 ............................... AACCTCAAAGTGCAGGTGGTCTCCTGTAGATAT 1375928 31 100.0 35 ............................... ACGGCACGCCTGTATTTATCGTAATACACTTCGAT 1375994 31 100.0 34 ............................... TATATTGCTACAGTGTGTAGGTGTAATTCCTCCT 1376059 31 96.8 37 ........................A...... CAATCTCCCATCCGCTTATAGTAGACTGCGGCAGCGA 1376127 31 96.8 0 ....................C.......... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 98.7 35 GTCGCATCCTCATGGATGCGTGGATTGAAAT # Left flank : TGAGAACGCCCAGGTGCGAAAGGCAAGTGAACATGGAATCCCCGGGTCTTTCGCACCTCAATATGGTGAAATGTGCAGGATATATGGCAGTGAATTATCATTTGGAGGACGTGGCAGTATAAAGGATCCCTGTATTTAGTACGTGTTCCGCCTATGATTACCATATATTGCGGTCGCATCCTCATGGATGCGTGGATTGAAATAACCTCAAAGTGCAGGTGGTCTCCTGTAGATATGTCGCATCCTCATGGATGCGTGGATTGAAATACGGCACGCCTGTATTTATCNATCTGTGGTAGAATGGAATATATAGCAAGCGCACAGTCACTGAGAACGCCCAGGTGCGAAAGGCAAGTGAACATGGAATCCCCGGGTCTTTCGCACCTCAATATGGTGAAATGTGCAGGATATATGGCAGTGAATTATCATTTGGAGGACGTGGCAGTATAAAGGATCCCTGTATTTAGTACGTGTTCCGCCTATGATTACCATATATTGCG # Right flank : TTCATAATGATTTTAGGGGAAGGGAGGATAGAGGCGTGTGATTGACAAAGAAAGAATAGATTTATAACACAAAGTATAGAATAGAAGGAGTATAAGGTCAGATATATTTATCTTGGGAAGATGATGCCTGAAGTGTGCTTTTGTGTTATAATCAAATTACAGATAGGATGCGGAGGAGAACGATTGATGTTTTATACTTTGATGAACATGGGAAGAGAGATAGTCAGATTCAGGACTTACAGAAATGAATATGGGACGGTTCGTGCAGATGATGTCAAGGTATTGCAACAGGATCTGCTTCCGCAGGAATACACAGGTGATGTCATCCGCTTTATTGAAGGAAGGAAAGCGCCAAAGCACAGAAAGCATGTTCGAAGCATATTGAAGCAGTTGGGAGCGGAAGATGTAGAAGGGTTTATCAGAGTAAGCAGTGCAGCATCTCTTACAGATACGTTCTGGGTAAGAGATGAAGAAGCACCAAAAACCTGGGAAGAGGTATC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1380564-1381183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWE010000008.1 Emergencia timonensis isolate MGYG-HGUT-01547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1380564 31 100.0 33 ............................... TTGAACTAACCAATTTTAATACAGAAATATCTG 1380628 31 100.0 35 ............................... ATAGGTTGGATTTTTTGTTGCTGCAGTATCACCCC 1380694 31 100.0 35 ............................... GCCGTAAGGTGTACTGTTCACGACTCCACGATCAG 1380760 31 100.0 34 ............................... CATTTTAACAACTGGGGAAGTCAATTGCAATCCG 1380825 31 100.0 36 ............................... CCATATGTCTTATAGGCGTTTGGGGAATACTTATAA 1380892 31 100.0 33 ............................... TGGTTCGGTTATATATTAATAAGCCGTACTCGT 1380956 31 100.0 33 ............................... TGTGTCTTGCTGATTTTGATGCCTAATTGCCAA 1381020 31 100.0 35 ............................... ACTGCCGTACTCTGCGGTCTGTTCTTTGCGTTTTT 1381086 31 100.0 36 ............................... GAGTTATGACAACGCGCATGGGTTTCTTCCGATTGT 1381153 31 93.5 0 .....................A.......T. | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 99.3 35 GTCGCATCCTCATGGATGCGTGGATTGAAAT # Left flank : TGTAAGTGAAGACAACTGACAATGCAAGAAGCACTGTTAAAAATTTCTTCATTTTAAGAATTCCTCCCTCTTTTTTTGTACGTTTTGTAAGATTATAGTTATGCGCGTTTTTGCACAAAACTTACAAATGAAATGATAGTTCACAATGATCTCGGGGGAAGGGTGTGAAAGCGTTGAACGTGAAATGATTTGTTGTGGGATTGGTGAGACAGCACGTAATTGTAAGGGAGATATGGCAGCGTCGCTCAGATGTTGCAGAAGATTCAAATGGAAGACCATTTTGGTGAAATCTGTGGTAGAATGGAATATATAGCAAGCGCACAGTCACTGAGAACGCCCAGGTGCGAAAGGCAAGTGAACATGGAATCCCCGGGTCTTTCGCACCTCAATATGGTGAAATGTGCAGGATATATGGTAGTGAATTATCATTTGGAGGACGTGGCAGTATAAAGGATCCCTGTATTTAGTACGTGTTCCGCCTATGATTACCATATATTGCA # Right flank : TTCACAATGATCTCGGGGGAAGGGAGGGCGCTATATAACAAAATTTCTGCAATGATACGACATCAAGTAAAAGTATAGTGCAAAAACATAAAAAAAGGTCAAGTGGGTATCCTTGACCTTCTTTCGCTATTAAAACTGCGTAACCCCCAAGTTACATTTTAATAGCTATTGGTGTTTGCTTTGAACAAAAGCAATTTATAGATTGTGAGACCAGTGTAATATCTGCAATCTATAATCATATTATACAGAAAAATCTAAAAAAGAAAAGACCATGTCTAAAATTGGAACATTTTGTTTGCATTTGACTACATAGGATTGGGTTTATTTGTATAGGTGACAATAAAAATAATTTGTGTTAGAATAATTACATTGATAAAACAAGAAAGGAAAGAAAACATGAAAAAACTAATGGCGTTAGTATTATCAGTTGCGATGGTGATCTGTGCATTGCCAGCGGCAATTTTTGCCGATGATACAGCAGCAACTGCAACTGACTTAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1429920-1430223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWE010000008.1 Emergencia timonensis isolate MGYG-HGUT-01547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1429920 33 100.0 35 ................................. ATTCTTGAATCTATCAGATTGCTTCGCCTTTTCGG 1429988 33 100.0 36 ................................. CTCCGTTTCCAGTTCCTCCGTTGTCGGTTCTGTCGG 1430057 33 100.0 35 ................................. CCCTCTATACTTGACTACGTAACACAAAGCGGGAA 1430125 33 100.0 33 ................................. CTCTATGAGTTCAGGCGTGATACTGCTTATTTC 1430191 33 93.9 0 .........T...........A........... | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.8 35 GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Left flank : GAAAGAGGTGGGCATCGCCCATGTATTTCAGGACAATACCACCTGCAGTGACTTGTTTTATTCCGGCCGGTTCGATTTTGTGGTCTACGAAAAAGTCGATGAGAATCACAAGCTGCCTGTTTTGGTCATTGAACTGGACGGACGGGAGCATTTCGAGGATGAAGTGGTAAAACGCCGCGACGCACAAAAGAAGGAAATCTGCCGGGCACACCAAATGGAACTGATTCGGGTGGAAAATTCCTACGCAAGGAGGTATAATCATATTAAGGATATATTGGAGAACTACTTCAAGGCACTGCGGTAACACAAAGAAAATACCAAACTGTTCTGTTTTACGCTGGTGCGAAAGGCAAGTGAACATGAAATCCCCAGGTGTTTCGCACCAAAATCTTTGCGCGTAAAATGACATAGATGGGTAATAATGGGAGTTAGCTTGCTGTTAAAAAGAGAAAAAGCGCTAAGAAATATAAATATTTCTAGAATATTGGAGATATTTTGCA # Right flank : TGAAGAAATACGGATTTAACCAAACGAAGGTCGCAACCCTGCAAGGGTCGCGTAGATTGAAATACAGATTGAAAGGGTTACCCTGGTATGAGTATAAAAATCAAAGATAAAAATGGTTTTGAAAAAGAATATATTAGAATCGAGCAATCACCGCATGCAAAACTTGCTGAGAAAGACACAGAGATAAAGCGAAAGGACGGAACAAAGGTAGAATATATCAACTCTTCGCAGGTCGATGAAGAAGAAATGCATCAACTACTTCGTCAAGCTGAGATTCGTGAAACCATTGCGAGAAATGAAAAAATAGAAAAGCGCATTGAAGAAAGAATACAGAAGGAAGCCAAGAAAGAAAAGAAGATAAGGGATGCAGAACAACAGAAGCAAGCGCGCCTAGCACTTAAACGAAATAAGACTGCCAAAAGCAACCAAAATAAAAGGGACTGGTCAGATTGCATTAAAGCTGTCCAGTATTTAGGCGCGGAGGTAGTCGGTGGCGGAAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGCTCCGCATGGAGCAAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 1461248-1463328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKWE010000008.1 Emergencia timonensis isolate MGYG-HGUT-01547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 1461248 33 100.0 36 ................................. CAGATTCCAAAAGCGAGACTTTTATCAAAAGTCATG 1461317 33 100.0 36 ................................. TCCCAATTACTGGAAACTACCCTAAAAGGTGTAGTA 1461386 33 100.0 33 ................................. ACCAAAACTGATTAGGACAATTAGACAAAGTAT 1461452 33 100.0 35 ................................. CAATATTTTTTGACCTGCCCATAACCATACATCTA 1461520 33 100.0 34 ................................. TGAGTTTAAATCGTCGCTCATTGCAATCATTGAT 1461587 33 100.0 35 ................................. AAAAACCCACTTAAAAAACTCATTAAATGTGTCTT 1461655 33 100.0 36 ................................. ATAATTTCCCTCCTTTTAGGCTCCTGCCCTTACTAC 1461724 33 100.0 35 ................................. ATGAAGCTGATGGGGCTTGGCACTTTGACATTGAC 1461792 33 100.0 36 ................................. AGCGTTGCCATCGTATGAGAAGAAGGAGGTAAAAGT 1461861 33 100.0 35 ................................. CATGATTTTACCAAACCGCAACCCAATCCGATATG 1461929 33 100.0 34 ................................. GACCTCATTTTCAATCTTTAACAGGTATTTAATC 1461996 33 100.0 35 ................................. CATTGATGGTTTATCAAAAGAAACGGCTGCAAGTG 1462064 33 100.0 33 ................................. TTTGGTGCCCAGACGGTAGCCGCCAACTTTTGA 1462130 33 100.0 39 ................................. TTAAGCAGCATGGACTCTATGTTGTCTACCTTTACCTGG 1462202 33 100.0 36 ................................. CATTTCTTCCAGCAATTGTTCGATTTGTGCCTCATA 1462271 33 100.0 33 ................................. TACGGCTAATGCTCCCGCCTTTTTTACACGCTG 1462337 33 100.0 36 ................................. ATTTCTGAGGAAGAAAAAGTGGAATTTACAATGCAC 1462406 33 100.0 35 ................................. ATTTAAATCGTTAAAATATCCTGCATCAAACTTAT 1462474 33 100.0 33 ................................. ACGTCTATTCTTTAGCATATCATCAACGAGAGG 1462540 33 100.0 37 ................................. ACCTGCTTATACAGATATTGGACATATCCGCAGACTA 1462610 33 100.0 34 ................................. AGTGCCAGCCCGCTCATGTCTCCGTAGTAGATGG 1462677 33 100.0 37 ................................. GTTGTAGTATGTAACGCCTCCATTATCGTGGATCATT 1462747 33 100.0 35 ................................. CGCTCCAACTGTGCGTGCCTGCCAGCTTCCTGCAT 1462815 33 100.0 34 ................................. CTCCATAGTCCAGCTTCAGCGGAATTCTCCCTTG 1462882 33 100.0 36 ................................. GGTATTAAAATTGGTAAGTTCAAGAACTGAGGCTTT 1462951 33 100.0 33 ................................. CTAATCTGTGACAATGCACTTAGACCTATATAT 1463017 33 100.0 36 ................................. CCAACCGTCCATTAATACAGATGGGGCACCTCCCCT 1463086 33 100.0 36 ................................. CCGAAGCATCTGAAAATGAATCTTGGGAACTCGTAG 1463155 33 97.0 36 .....................A........... CCACTACGGAAATAGGCTGGCTTGAAAAGCTGTGGG 1463224 33 100.0 39 ................................. GTTTCCGTAGTTAAAGGCTTACTTGCAGTATTCGCTGGA 1463296 33 97.0 0 ............................A.... | ========== ====== ====== ====== ================================= ======================================= ================== 31 33 99.8 35 GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Left flank : TTTGGAGAGCTATCCGCCGTTTTTGTGGAAGTAAGGAGGGGGTTATGTTAGTCTTAATTACCTATGACGTGTCTACGCAGGATGGTGCCGGAAAGAAAAGGCTGCGTAAAGTTGCCAAGGAGTGCGTGAACTATGGTCAAAGAGTGCAAAACTCAGTATTTGAGTGCATACTTGATGCATCACAAGCCTTACTGCTGAAAGACAAGCTTTTGTCAATTATTGATGAGACGCAGGATAGCCTCAGGTTTTATAATCTCGGAAACAATTACGAGACAAAAGTGGAACATTATGGAGCTAAAGAAAGTTATAAAGCAGAAGGCGTTTTGATGGTATAACCTAGGTGCGAAAGGCAAGTGAACATGAAATCCCTGGGTCTTTCGCACCTGTATTCTTGTAAGTTTAATTCCATATGTGGAAATATATGTTACATATGGTTTGTCCAAATCTAAAAGTAATACAAATTAATGGGAATTTCTTTAGGAGATTGGCGTTAATTTGCA # Right flank : TTTTTGTATAGCAATATTTAAACGGTACGATTGTGTGTCGCACTCCGCTTGGATTGAAATATCATCCAGTTTATACAGCAGCACCAAATCACCTTTGCTACACTCTGCGCAGAGCAGAAGCATACATACCACCATATTGTGCTATATTAGAATACGAAATAGAAGGCATGGTATTAACTAACTGTTGGAACAAAATAGACACGCCTTTCACCAGATTTTCTTGCGTTTTTAAAAAATCTTTTTAAAGATGAATTGATTTTATGATCAATTCTTTTTCTATATCCAGTGACTTTCCTCTATCTCTTCCGCATGAAATCCTCATGTTTTGTAAACACTATCCATACGACAAATTTCGACAGCGTAGATTGTTTGGCATTTACGGTTGATGACAGGCTTGAGCTGTTCAATTGTCGTATTGGGCAAACTTTTTCTGCAATTATCTAAATGAAATGCAGACGAATGTCAATAAGCGTGCCTATTAGTTCAATTTTATCATTACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //