Array 1 50644-51092 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWP01000018.1 Pseudomonas composti strain CCUG 59231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50644 28 100.0 32 ............................ AGTTGCTGACGCCAGTTGTTGATGAAATTCAT 50704 28 100.0 32 ............................ AGGCTGAGACGTGCGCGGCCTGTGCGGTCGGT 50764 28 100.0 32 ............................ GCACGCGCCGCAGCGGTGGCGATATCATCGTG 50824 28 100.0 32 ............................ TTGACGGTTGGGGCGGCAGGGGCGGTAAGAAC 50884 28 100.0 32 ............................ AACAGCGTTGGCACACAGCGGCTGCTGCAAAT 50944 28 100.0 33 ............................ CGACAGCTTCACCCCAGGCCAGCCGGCCGGCAG 51005 28 100.0 32 ............................ AGGCACAAAAAACCCGCACGCGGCGGGCAGTG 51065 28 75.0 0 .C..........GC.......C.C.C.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : ACCAATACACGCACAGGCCGGCCATCAGCAGATGGCTGATCCAGTTCCTCACCCCATAGCGCAGCATCCACTCACCCAGGTTCTCCATGGGCGAGTTGAACAGCAGGGATGCCATCGTCATCAGGATGCCGATCACCCCGACCAGCAGCGCAACGCCTACCAGGTAATGTGGCAGCGCTGGAGACTCACGCGTAGCGGCCGGTGCTGGCGGCGGGGCAATATCGAAAGGGTTGGCTTGGGTCATGAACGATCCTTGTCGTTAGGTGCACTTATCGAATGTGCGCGAGCATAGTCTCCATGCCTTGCAGGCAAAAGCACCACCCACCGATCGCGTGCGGCAACGCACATGGGCCTCGAAACCGGGCTGATACCCTTTTTCCGGCCCCATACCCAGGCTCTTTAAAAATCAAAGAGTTGGAGATAGCCCTGCAAAAAGGGTCAAACCGCTAGAAAAGGGCCCCCAGCGTTGAGAAACAGCGATTTGGACACTATCGTCTCTA # Right flank : CTTGGCACCTCAGAGCAAAAGAGCTTAACTGCCAGCATTGCCTCAGGAGCCCTTCATGGATGACATCAGCCCCTCCGACCTCAAGACCATCCTTCACTCCAAGCGCGCCAATCTCTACTACCTGCAGCACTGCCGGGTACTGGTCAATGGCGGGCGAGTGGAGTACGTCACCGATGCTGGCAAGCAATCGTTGTACTGGAATATCCCCATCGCCAATACCACCACCATCCTGCTCGGCACCGGTACTTCGATCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGCGGCGGCGGTGGTACGCCGCTGTTTTCGGTCAACGAGATGGATGTGGAGGTGGCCTGGTTCACGCCGCAAAGCGAATACCGCCCCACGGAGTACCTGCAGAAGTGGGTTAGGTTCTGGTTCGACGATGACAAGCGCCTCGAAGCAGCCAAGGCCTTCCAGCTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 61614-62783 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWP01000018.1 Pseudomonas composti strain CCUG 59231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61614 28 100.0 32 ............................ AGGACACCTGCGGTCACGCTGCAGTAAATCCA 61674 28 100.0 32 ............................ GAGTGGCCGTGCTGGGTGGAGGGGGTGAGCGG 61734 28 100.0 32 ............................ TGCCAAAGCCGCAGGGAGTCAGATACAAAGTA 61794 28 100.0 32 ............................ TCACGGGCACCGTCGCCGGCGCCGGCACTGTC 61854 28 100.0 32 ............................ GTGCGCGCGGCAGTCAGCGACGCAGCGCTAAT 61914 28 100.0 32 ............................ GGCAGGGAGGGGGCTGCGCCATCAGCGAACGT 61974 28 100.0 32 ............................ AGGCGCAACGCCAGGCCTGATCTACCCCACCC 62034 28 100.0 32 ............................ TCGTTCTGAGCAGTGTCGGCATCCGCTACAGC 62094 28 100.0 33 ............................ AATCCTGTGTGTCGCTCGATACGGCGACGTAGT 62155 28 100.0 32 ............................ GGCTTGCACTGACAATTCGCCGACTCAAGTCG 62215 28 100.0 33 ............................ CAATCGATCCCTTGATACCCGTTCCGCCAGTCT 62276 28 100.0 32 ............................ AAGACGATTGACGCGAACGCCTGTGCGAAAAG 62336 28 100.0 32 ............................ GCCATCTAGGCACTCGATGTTCGTGACGAAAT 62396 28 100.0 32 ............................ GAAAGTGTCACGCAGACCACTGTTATCATGCG 62456 28 100.0 32 ............................ TGACCGTGCTCGGGTCAATATGGAGGCGTCAC 62516 28 100.0 32 ............................ TGCAAGACTTCCTAATTTCCCTTCTATGCCTA 62576 28 100.0 32 ............................ AGAGCGATTCGGCATCAACGCCGCACCCGGTG 62636 28 100.0 32 ............................ GTCGAGCTGCTGCGCGAGGATATGGAGCTCGT 62696 28 100.0 32 ............................ CCTGTGGCGCGCCATGGATCGGACTTCGCCCT 62756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCACTGGACAAGCTGCTGGCGCTCAACTGGCTCAACGGCATGCGCGACCACCTGCAACTGGGCGAACTGGCGCCAATCCCTGTGCAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAACGCACCCGCCGCCGCCTGATCAAGCGCCACAGCATCAGCGAAGAGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCCTATGCCACCTTGCGCAGCAACGGTAGCGGCCACAGCTTCCGCCTGTTCATCCGTCACGGCCCACTGCTCGATACGCCTACATCCGGCACCTTCGGCGCCTACGGCCTGAGCACCCAGGCCAGCATCCCCTGGTTCTGACCCTTTTTTCTGAGCGCAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGTGGCTCCGAAAAAAGGGGTCTCAGCCATAAAACCAGCATGGCTCTTTAACAATCAGTACGTTAGGGTTTCAGGGCTCTA # Right flank : AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 63847-64053 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWP01000018.1 Pseudomonas composti strain CCUG 59231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63847 28 100.0 32 ............................ GTCTCGAGGTTCGGCGAGATCTCGAGCAGCCC 63907 28 100.0 32 ............................ AACTGCGGTAGCTGGGCGTTTTTGCGCGGCGA 63967 28 100.0 32 ............................ CACACATCCGGGTTATTCATATCGGCGCGCTT 64027 27 89.3 0 .....................-.CT... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTT # Right flank : ATTCACTCCGCCAACGCACGAAACATCACATGGCAATCCACCAGTCCATGCCGGGCGTGGCGGTATGCCTTGGGCAAGGTGCCGACGATGGCGAAGCCGTGTTTCTGCCACAACGCCACAGCGACCGTGTTGGTCGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAGTTCGCGCGCGATTTCCAGCGAATGGGTGCAGAGCTTGCCGGCGATGCCCTGGCCGCGCGCAGCGGGGGCCGTCATGTAGCCGCAGTTGCACACATGGTCGCCAGGGCCGGCGGCGTTGGCCTTGATGTAGTAGGTGCCAAGGATCTGCCCGCCCTGCTCGGCGACAAAGGTGGCACGCGGCAGTTCTACCCAGGTTTTCCAGGCAGTTTCACGATCCATGTGCGGATCGAAGGCGTAGGTTTCCTGCGCCTGCACCACGTCTCGGATGATCGGCCAGACCTGATCGAAGTCGGCCATCTCGATAGGTCGAATGATCAACTCGACACT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //