Array 1 99770-98520 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXMJ01000010.1 Salmonella enterica strain BCW_1640 NODE_10_length_124830_cov_1.93196, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     99769	    29	  96.6	    32	............................C	CAGCATCGCCAGGATACGCGCGCCGTGGATAT 	
     99708	    29	 100.0	    32	.............................	GATGGTGAGTGGCCCATCGATAACGGTGTCAT 	
     99647	    29	 100.0	    32	.............................	GACACGCTCAACCGCAGCGCAGGCGAAAGCAA 	
     99586	    29	 100.0	    32	.............................	GAGATTAACGCGGCTAATGACCGCCAGAAAAA 	
     99525	    29	 100.0	    32	.............................	TAAAGTGGGGCATCTGGAACGTCGCGCCCCAT 	
     99464	    29	 100.0	    32	.............................	CTGGCGGTGAATAAACAGCGCGAGTGGCCTGA 	
     99403	    29	 100.0	    32	.............................	GCCGTGGCTCTTGGTGCGACGCTTTCAGAAAA 	
     99342	    29	 100.0	    32	.............................	CGCTATGGCGATATTGCCGATGCCATGCTGAC 	
     99281	    29	 100.0	    32	.............................	CCCAGCTCCAAAAATATTGGGCGGGTGATGAT 	
     99220	    29	 100.0	    32	.............................	TGCTTATATTGGAAACTAAATGTTATCCAGTG 	
     99159	    29	 100.0	    32	.............................	GAGTGCGGAGATGGTTGACCTTGGGGATACGG 	
     99098	    29	 100.0	    32	.............................	AACATGAGTTGCTGGCGTTGTTAAAATTTTGT 	
     99037	    29	 100.0	    32	.............................	TGCGCCGCCAGATGCCATTTGCAACCGCATCG 	
     98976	    29	 100.0	    32	.............................	GTCACACGTCGCCAGACGCTTGCGCGATTTCT 	
     98915	    29	  96.6	    32	............................A	GAATTGAACAGAGCGATAACCGCCGCCAGCGC 	
     98854	    29	 100.0	    32	.............................	CAATACGGCTGGACGGGGTTTGATTCGTTAAC 	
     98793	    29	 100.0	    32	.............................	GTATTTAACCCAGGATTCACACTCGGCCATTC 	
     98732	    29	 100.0	    32	.............................	TTGGATCTCGCTAATGATCATGGCGCGGAGAT 	
     98671	    29	 100.0	    33	.............................	GCTCGATGAGGCGTTTACCTGCTGGTATCAGGC	
     98609	    29	 100.0	    32	.............................	TTTCTGCTGTGTGTACCCGAGCTCTTTCCTCC 	
     98548	    29	  93.1	     0	...........................GT	|                                	
==========	======	======	======	=============================	=================================	==================
        21	    29	  99.3	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   AATAATGTCCAGCGCTTCGCGGCGTTGCTGTATCCAGTTTACGCTCACGGTACGTTGCATTTCCGGGCGCGCGGCAAGCGGTTGCTCCAACAGACCGGAGGAAGAGAGATGGCTTAACCACGGGTAACCCGCGTTATCGTTGGGGTCTGCGGCGGCGAATCCTGCGCCATTATTGAAGGCGTCGAGTAATTTTTCCCGCAGGGCTGCGGGCAGCGTGGCGCTTAAAATAATCGCGCTACCGCCCTGGGCGGCATGGAAACGCAGTAGACCTTCCAGCAATTTCACCATATAACCATCGTAAGCGTGGACTTCATCCAGCAGCAGGATCTTGTCCCTCATTCCCAACAGGCGGAGCGACTGGTGGCGAAAAGGCATCACCGCCATTAAGAGCTGATCCAGCGTACCTACGCCAACCTCCGCCAGCAGCGCTTTTTTGCGCGAATCGGCAAACCAGGCGTGACACTCGCTGGCCGCGTTGCCGTCATGATGCGCGTAATCTT
# Right flank :  TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//